Merge pull request 'Offset event_id across multi-shard reference reads in giant analyze (gitea #22)' (#69) from fix/issue-22 into master
Reviewed-on: #69
This commit was merged in pull request #69.
This commit is contained in:
@@ -40,6 +40,11 @@ from giant.constants import (
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TERM_MAX_STEPS,
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TERM_UNKNOWN_PDG,
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)
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from giant.data.loader import event_id_offset, find_parquet_files
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# Helper column name for the per-shard offset join in open_side; dropped before
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# the LazyFrame is returned, so it never leaks into a caller's schema.
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_SOURCE_PATH_COL = "__source_path"
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# The world-frame physical columns both sides share under identical names.
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PHYS_COLS: tuple[str, ...] = (
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@@ -108,6 +113,22 @@ def open_side(source: str | Path | pl.LazyFrame, side: Side) -> pl.LazyFrame:
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reference file's upstream ROOT→parquet conversion don't agree on integer
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width, and an uncast mismatch only surfaces later as a ``pl.concat``
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``SchemaError`` (e.g. in ``build_context``'s pdg-count merge).
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The reference (a rollout's seed ``dataset``) may be a directory of parquet
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shards, or a ``.manifest`` naming a subset, rather than a single file — each
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such shard is a separate Geant4 job whose own ``event_id`` numbering
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restarts from 0, so a multi-shard load offsets every shard's ids by
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``giant.data.loader.event_id_offset(file_index)`` to keep them globally
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unique, exactly as the training/rollout data pipeline already does
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(``giant/data/loader.py``). ``file_index`` comes from
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``find_parquet_files``'s deterministic ordering — the same list and
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ordering ``giant rollout`` used (via ``_seed_from_data``) to offset the
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rollout side's own ``event_id``s, so both sides agree on what an
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``event_id`` means. There is no overflow guard here (unlike
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``loader._offset_event_id``): checking it would cost an eager
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``event_id``-column read per shard in every condor compute job, and
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``giant rollout`` already ran that check over this exact file list when it
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produced the seed.
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"""
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if isinstance(source, pl.LazyFrame):
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return source.with_columns(pl.col("pdg").cast(pl.Int64))
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@@ -116,9 +137,18 @@ def open_side(source: str | Path | pl.LazyFrame, side: Side) -> pl.LazyFrame:
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_check_rollout_metadata(path)
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lf = pl.scan_parquet(path)
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else:
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# The reference (a rollout's seed `dataset`) may be a directory of
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# parquet shards rather than a single file — scan them all.
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lf = pl.scan_parquet(str(path / "**/*.parquet")) if path.is_dir() else pl.scan_parquet(path)
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files = find_parquet_files(path)
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if len(files) == 1:
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lf = pl.scan_parquet(files[0])
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else:
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offsets = {str(p): event_id_offset(i) for i, p in enumerate(files)}
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lf = (
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pl.scan_parquet(files, include_file_paths=_SOURCE_PATH_COL)
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.with_columns(
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pl.col("event_id") + pl.col(_SOURCE_PATH_COL).replace_strict(offsets, return_dtype=pl.Int64)
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)
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.drop(_SOURCE_PATH_COL)
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)
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return lf.with_columns(pl.col("pdg").cast(pl.Int64))
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@@ -10,9 +10,11 @@ from giant.analysis import reduce as R
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from giant.analysis.sources import (
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SYNTHETIC_TERMINATION_REASONS,
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Side,
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open_side,
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physical_steps,
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secondaries,
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)
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from giant.data.loader import EVENT_ID_FILE_STRIDE
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def _rollout_frame() -> pl.LazyFrame:
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@@ -194,3 +196,35 @@ def test_pdg_and_material_labels():
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assert G.pdg_label(22) == "gamma"
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assert G.pdg_label(999999) == "999999"
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assert G.material_label("G4_PbWO4") == "PbWO4"
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def _write_shard(path, event_ids, edeps):
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pl.DataFrame({"event_id": event_ids, "pdg": [11] * len(event_ids), "edep": edeps}).write_parquet(path)
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def test_open_side_reference_offsets_event_ids_across_shards(tmp_path):
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# Each shard is a separate Geant4 job whose own event_id numbering restarts
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# from 0 — a naive multi-shard scan collides on event_id across shards.
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_write_shard(tmp_path / "a.parquet", [0, 1], [1.0, 2.0])
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_write_shard(tmp_path / "b.parquet", [0, 1], [3.0, 4.0])
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df = open_side(tmp_path, Side.reference).sort("event_id").collect()
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assert df["event_id"].to_list() == [0, 1, EVENT_ID_FILE_STRIDE, EVENT_ID_FILE_STRIDE + 1]
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assert df["edep"].to_list() == [1.0, 2.0, 3.0, 4.0]
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assert "__source_path" not in df.columns
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def test_open_side_reference_single_file_unchanged(tmp_path):
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_write_shard(tmp_path / "only.parquet", [0, 1], [1.0, 2.0])
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df = open_side(tmp_path / "only.parquet", Side.reference).sort("event_id").collect()
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assert df["event_id"].to_list() == [0, 1]
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assert "__source_path" not in df.columns
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def test_open_side_reference_manifest(tmp_path):
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_write_shard(tmp_path / "a.parquet", [0, 1], [1.0, 2.0])
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_write_shard(tmp_path / "b.parquet", [0, 1], [3.0, 4.0])
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manifest = tmp_path / "shards.manifest"
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manifest.write_text("a.parquet\nb.parquet\n")
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df = open_side(manifest, Side.reference).sort("event_id").collect()
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assert df["event_id"].to_list() == [0, 1, EVENT_ID_FILE_STRIDE, EVENT_ID_FILE_STRIDE + 1]
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assert df["edep"].to_list() == [1.0, 2.0, 3.0, 4.0]
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