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geant4/examples/extended/medical/dna/neuron/vis.mac
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2021-12-10 16:15:15 +00:00

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# Use this open statement to create an OpenGL view:
#/vis/open OGL 600x400-0+0
# WARNING= A viewer is created in the main function of this program
/vis/ogl/set/displayListLimit 9999999999
#
# Use this open statement to create a .prim file suitable for
# viewing in DAWN:
#/vis/open DAWNFILE
#
# Use this open statement to create a .heprep file suitable for
# viewing in HepRApp:
#/vis/open HepRepFile
#
# Use this open statement to create a .wrl file suitable for
# viewing in a VRML viewer:
#/vis/open VRML2FILE
#
# Disable auto refresh and quieten vis messages whilst scene and
# trajectories are established:
/vis/viewer/set/autoRefresh false
/vis/verbose errors
#
# Draw geometry:
/vis/drawVolume
#
# Specify view angle:
/vis/viewer/set/viewpointThetaPhi 20. 30.
#/vis/viewer/set/viewpointVector 1 0 0
/vis/viewer/set/lightsVector 1 5 30
#
# Specify zoom value:
#/vis/viewer/zoom 2.
#
# Specify style (surface, wireframe, auxiliary edges,...)
#/vis/viewer/set/style wireframe
#/vis/viewer/set/auxiliaryEdge true
#/vis/viewer/set/lineSegmentsPerCircle 100
#
# Draw coordinate axes:
#/vis/scene/add/axes 0 0 0 1 m
#
# Draw smooth trajectories at end of event, showing trajectory points
# as markers 2 pixels wide:
/vis/scene/add/trajectories rich smooth
/vis/modeling/trajectories/create/drawByCharge
#/vis/modeling/trajectories/drawByCharge-0/default/setDrawStepPts true
#/vis/modeling/trajectories/drawByCharge-0/default/setStepPtsSize 2
# (if too many tracks cause core dump => /tracking/storeTrajectory 0)
/vis/modeling/trajectories/create/drawByParticleID
/vis/modeling/trajectories/drawByParticleID-0/default/setDrawStepPts true
/vis/modeling/trajectories/drawByParticleID-0/default/setStepPtsSize 1
#/vis/modeling/trajectories/drawByParticleID-0/default/setLineColour cyan
/vis/modeling/trajectories/drawByParticleID-0/default/setStepPtsColour red
#/vis/viewer/set/globalLineWidthScale 2
#/vis/viewer/rebuild
### Acceptable colours (black blue cyan gray green brown magenta red white yellow)
/vis/modeling/trajectories/drawByParticleID-0/set e- red
/vis/modeling/trajectories/drawByParticleID-0/set proton black
/vis/modeling/trajectories/drawByParticleID-0/set alpha black
/vis/modeling/trajectories/drawByParticleID-0/set helium black
/vis/modeling/trajectories/drawByParticleID-0/set Fe56 black
/vis/modeling/trajectories/drawByParticleID-0/set C12 black
/vis/modeling/trajectories/drawByParticleID-0/set gamma yellow
/vis/modeling/trajectories/drawByParticleID-0/set e+ red
#### molecular species in water radiolysis
/vis/modeling/trajectories/drawByParticleID-0/set e_aq blue
/vis/modeling/trajectories/drawByParticleID-0/set OH magenta
/vis/modeling/trajectories/drawByParticleID-0/set H3O green
/vis/modeling/trajectories/drawByParticleID-0/set H gray
/vis/modeling/trajectories/drawByParticleID-0/set OH- cyan
/vis/modeling/trajectories/drawByParticleID-0/set H_2 black
/vis/modeling/trajectories/drawByParticleID-0/set H2O2 brown
#
# Draw hits at end of event:
#/vis/scene/add/hits
#
##/vis/modeling/trajectories/drawByParticleID-0/default/setDrawAuxPts true
#/vis/modeling/trajectories/drawByParticleID-0/default/setAuxPtsSize 5
#/vis/modeling/trajectories/list
#/vis/modeling/trajectories/drawByParticleID-0/default/setTimeSliceInterval 0.1 ns # ???
#/vis/modeling/trajectories/select drawByCharge-0
# Use to draw just selected types of radicals
#/vis/filtering/trajectories/create/particleFilter
#/vis/filtering/trajectories/particleFilter-0/add e-
#/vis/filtering/trajectories/particleFilter-0/add e_aq
#/vis/filtering/trajectories/particleFilter-0/add OH
#/vis/filtering/trajectories/particleFilter-0/add H3O
#/vis/filtering/trajectories/particleFilter-0/add H
#/vis/filtering/trajectories/particleFilter-0/add OH-
#/vis/filtering/trajectories/particleFilter-0/add H_2
#/vis/filtering/trajectories/particleFilter-0/add H2O2
#/vis/viewer/set/timeWindow/startTime 1 ns
#/vis/viewer/set/timeWindow/endTime 10 ns
#
# To invert the above, drawing all particles except gammas,
# keep the above two lines but also add:
#/vis/filtering/trajectories/particleFilter-0/invert true
#
# Many other options are available with /vis/modeling and /vis/filtering.
# For example, to select colour by particle ID:
#/vis/modeling/trajectories/create/drawByParticleID
#/vis/modeling/trajectories/drawByParticleID-0/set e- blue
#
# To superimpose all of the events from a given run:
/vis/scene/endOfEventAction accumulate
#
# Re-establish auto refreshing and verbosity:
/vis/viewer/set/autoRefresh true
/vis/verbose warnings
# Decorations
# Name
#/vis/set/textColour green
#/vis/set/textLayout right
# or, if your system does not support right-adjustment
#/vis/scene/add/text2D 0.9 -0.9 12
#/vis/set/textLayout # Revert to normal (left adjusted) layout
#/vis/set/textColour # Revert to default text colour (blue)
#
# Axes, scale, etc.
/vis/scene/add/scale # Simple scale line
#/vis/scene/add/eventID # Drawn at end of event or particle tracks
#/vis/scene/add/date # Date stamp
#/vis/scene/add/logo2D # Simple logo of Geant4
#/vis/scene/add/logo # 3D logo
#/vis/scene/add/axes -120 -140 -15 50 um # Simple axes: x=red, y=green, z=blue.
# Frame
#/vis/set/colour red # enable
#/vis/set/lineWidth 2 # enable
#/vis/scene/add/frame # Simple frame arond the view
#/vis/set/colour # Revert to default colour (white)
#/vis/set/lineWidth # Revert to default line width (1.)
#
# Attach text to one edge of Shape1, with a small, fixed offset
#/vis/set/textColour magenta
#/vis/scene/add/text -38 -125 -0.45 um 25 4 4 Soma
# Attach text to one corner of Shape2, with a small, fixed offset
#/vis/set/textColour blue
#/vis/scene/add/text -5 110 0 um 20 4 4 Dendrites
#/vis/set/textColour black
#/vis/scene/add/text -40 -140 0 um 15 4 4 Axons
#/vis/set/textColour red
#/vis/scene/add/text 5 -40 0 um 10 4 4 Dendritic Spines
#
# To get nice view
#/vis/geometry/set/visibility World 0 false #changement
#/vis/geometry/set/visibility Envelope 0 false #changement
#/vis/viewer/set/style wireframe #surface
#/vis/viewer/set/hiddenMarker true
#/vis/viewer/set/viewpointThetaPhi 95 170
#/tracking/storeTrajectory 3
#
# Re-establish auto refreshing and verbosity:
/vis/viewer/set/autoRefresh true
/vis/verbose warnings
#
# For file-based drivers, use this to create an empty detector view:
#/vis/viewer/flush
#/vis/set/textLayout centre
#/vis/scene/add/scale 50 um #x red #manual 80 -110 0 um
#/vis/viewer/set/targetPoint -1 -21.7 0 um
#/vis/viewer/zoomTo 50
/vis/viewer/set/background white
# set print mode to vectored
#/vis/ogl/set/printMode vectored
# set print size larger than screen
#/vis/ogl/set/printSize 20 20
# Export
#/vis/ogl/export
#
# https://geant4.web.cern.ch/geant4/UserDocumentation/UsersGuides/ForApplicationDeveloper/html/ch08s07.html
#/vis/modeling/trajectories/drawByAttribute-0/addValue muIon_key muIoni
#/vis/modeling/trajectories/drawByAttribute-0/addValue eIon_key eIoni