64 lines
3.5 KiB
Markdown
64 lines
3.5 KiB
Markdown
\page Examples_dna Category "medical/dna"
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This directory contains a set of Geant4-DNA examples.
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## Physics
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- \link ExampleDnaphysics dnaphysics \endlink Simulation of track structures in liquid water using the Geant4-DNA physics processes and models.
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- \link Exampleclustering clustering \endlink Clustering application for direct damage extraction.
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- \link Exampleicsd icsd \endlink Use of cross section models for DNA materials,
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- \link Examplejetcounter jetcounter \endlink A setup for simulation of a typical experiment with the Jet Counter nanodosemeter
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- \link Examplemfp mfp \endlink Simulation of mean free path in liquid water.
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- \link ExampleMicrodosimetry microdosimetry \endlink Simulation of the track of a 5 MeV proton in liquid water. Geant4 standard EM models are used in the World volume while Geant4-DNA models are used in a Target volume, declared as a Region.
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- \link Examplemicroprox microprox \endlink Computation of proximity functions in liquid water.
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- \link Examplemicrotrack microtrack \endlink Calculation of microdosimetry quantities for ion track segments.
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- \link Examplemicroyz microyz \endlink Simulation of microdosimetry spectra.
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- \link Examplephasespace phasespace \endlink Production of phase space files.
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- \link Exampleradial radial \endlink Simulation of radial dose of ions.
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- \link Examplerange range \endlink Simulation of ranges.
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- \link ExampleSlowing slowing \endlink Simulation of slowing down spectra.
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- \link ExampleSplitting splitting \endlink Use of variance reduction to improve the computational efficiency of ionization.
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- \link Examplespower spower \endlink Simulation of stopping power.
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- \link Examplesvalue svalue \endlink Simulation of S-values in spheres of liquid water using the Geant4-DNA physics processes and models.
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- \link Examplewvalue wvalue \endlink Simulation of W-values in liquid water using the Geant4-DNA physics processes and models.
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- \link ExampleAuNP AuNP \endlink Simulation calculates absorbed dose around AuNP.
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## Chemistry
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- \link ExampleChem1 chem1 \endlink Simple activation of the chemistry module.
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- \link ExampleChem2 chem2 \endlink Usage of TimeStepAction in the chemistry module.
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- \link ExampleChem3 chem3 \endlink Activate the full interactivity with the chemistry module.
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- \link ExampleChem4 chem4 \endlink Simulation of radiochemical yields with the chemistry module.
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- \link ExampleChem5 chem5 \endlink Variation of chem4, using the contructors G4EmDNAPhysics_option8 and G4EmDNAChemistry_option1.
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- \link ExampleChem6 chem6 \endlink Based on chem4 example, this example provides to score the radiochemical yield G.
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- \link Examplescavenger scavenger \endlink Activation of the scavenging process in chemistry.
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- \link ExampleUHDR UHDR \endlink Ultra High Dose Rate.
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## Geometry and other
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- \link ExamplePdb4dna pdb4dna \endlink Usage of the Protein Data Bank (PDB) file format to build geometries.
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- \link ExampleWholeNuclearDNA wholeNuclearDNA \endlink Geometrical description of a full simplified cell nucleus.
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- \link Examplednadamage1 dnadamage1 \endlink Damage simulation on a chromatin fiber.
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- \link Examplednadamage2 dnadamage2 \endlink Scoring of plasmid DNA strand breaks using the IRT method.
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- \link Exampleneuron neuron \endlink Irradiation of a realistic neuron cell.
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## Molecular counters
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- \ref Examples_molcounters
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See the README page inside each example for more detail.
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