Gabriele Cosmo
97 lines
4.0 KiB
C++
97 lines
4.0 KiB
C++
//
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// ********************************************************************
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// * License and Disclaimer *
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// * *
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// * The Geant4 software is copyright of the Copyright Holders of *
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// * the Geant4 Collaboration. It is provided under the terms and *
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// * conditions of the Geant4 Software License, included in the file *
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// * LICENSE and available at http://cern.ch/geant4/license . These *
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// * include a list of copyright holders. *
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// * *
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// * Neither the authors of this software system, nor their employing *
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// * institutes,nor the agencies providing financial support for this *
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// * work make any representation or warranty, express or implied, *
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// * regarding this software system or assume any liability for its *
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// * use. Please see the license in the file LICENSE and URL above *
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// * for the full disclaimer and the limitation of liability. *
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// * *
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// * This code implementation is the result of the scientific and *
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// * technical work of the GEANT4 collaboration. *
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// * By using, copying, modifying or distributing the software (or *
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// * any work based on the software) you agree to acknowledge its *
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// * use in resulting scientific publications, and indicate your *
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// * acceptance of all terms of the Geant4 Software license. *
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// ********************************************************************
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//
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//
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/// \file DNAGeometryMessenger.hh
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#ifndef MOLECULAR_DNA_MESSENGER_HH
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#define MOLECULAR_DNA_MESSENGER_HH
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#include "G4UIcmdWith3VectorAndUnit.hh"
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#include "G4UIcmdWithABool.hh"
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#include "G4UIcmdWithADouble.hh"
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#include "G4UIcmdWithADoubleAndUnit.hh"
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#include "G4UIcmdWithAString.hh"
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#include "G4UIcmdWithAnInteger.hh"
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#include "G4UIcmdWithoutParameter.hh"
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#include "G4UIdirectory.hh"
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#include "G4UImessenger.hh"
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#include "globals.hh"
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#include <memory>
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class DNAGeometry;
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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class DNAGeometryMessenger : public G4UImessenger
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{
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public:
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explicit DNAGeometryMessenger(DNAGeometry*);
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~DNAGeometryMessenger() override = default;
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void SetNewValue(G4UIcommand*, G4String) override;
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protected:
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private:
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DNAGeometry* fpDNAGeometry;
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// Related to "voxel" placements
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std::unique_ptr<G4UIdirectory> fpDNADirectory;
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std::unique_ptr<G4UIcmdWithAString> fpNewPlacementVolumeFile; // specifies molecule locations
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std::unique_ptr<G4UIcmdWithAString> fpVoxelPlacementsFile; // specifies voxel locations
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std::unique_ptr<G4UIcmdWith3VectorAndUnit> fpVoxelSideLength; // voxel size
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std::unique_ptr<G4UIcmdWith3VectorAndUnit>
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fpFractalScaling; // multiplier for de-dimensionalised voxel locations
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std::unique_ptr<G4UIcmdWithABool>
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fpAnglesAsPi; // take voxel placement angles as multiples of pi
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std::unique_ptr<G4UIcmdWithABool>
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fpCustomMoleculeSizes; // turn off default molecule sizes and use custom
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std::unique_ptr<G4UIcmdWithAString> fpAddMoleculeSize; // set a molecule size
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// Related to processing
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std::unique_ptr<G4UIcmdWithABool> fpCheckDNAOverlaps;
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std::unique_ptr<G4UIcmdWithAnInteger> fpVerbosity;
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std::unique_ptr<G4UIcmdWithAnInteger> fpSmartless;
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// damage-like
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std::unique_ptr<G4UIcmdWithADoubleAndUnit> fpIntRangeDirect;
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std::unique_ptr<G4UIcmdWithADoubleAndUnit> fpRadicalKillDistance;
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std::unique_ptr<G4UIcmdWithABool> fpUseHistoneScav;
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// vis
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std::unique_ptr<G4UIcmdWithABool> fpDrawCellVolumes;
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// testing
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std::unique_ptr<G4UIdirectory> fpTestDirectory;
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std::unique_ptr<G4UIcmdWithoutParameter> fpChromosomeTest;
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std::unique_ptr<G4UIcmdWithoutParameter> fpBasePairTest;
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std::unique_ptr<G4UIcmdWithoutParameter> fpUniqueIDTest;
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};
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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#endif // MOLECULAR_DNA_MESSENGER_HH
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