Import Geant4 11.3.0 source tree
This commit is contained in:
Gabriele Cosmo
@@ -0,0 +1,62 @@
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//
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// ********************************************************************
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// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// --------------------------------------------------------------------------------
|
||||
// MONTE CARLO SIMULATION OF REALISTIC GEOMETRY FROM MICROSCOPES IMAGES
|
||||
//
|
||||
// Authors and contributors:
|
||||
// P. Barberet, S. Incerti, N. H. Tran, L. Morelli
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||||
//
|
||||
// University of Bordeaux, CNRS, LP2i, UMR5797, Gradignan, France
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//
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||||
// If you use this code, please cite the following publication:
|
||||
// P. Barberet et al.,
|
||||
// "Monte-Carlo dosimetry on a realistic cell monolayer
|
||||
// geometry exposed to alpha particles."
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||||
// Ph. Barberet et al 2012 Phys. Med. Biol. 57 2189
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// doi: 110.1088/0031-9155/57/8/2189
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// --------------------------------------------------------------------------------
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#ifndef ActionInitialization_h
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#define ActionInitialization_h 1
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#include "G4VUserActionInitialization.hh"
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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class DetectorConstruction;
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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class ActionInitialization : public G4VUserActionInitialization
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{
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public:
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ActionInitialization();
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~ActionInitialization() override = default;
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void BuildForMaster() const override;
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void Build() const override;
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};
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#endif
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@@ -0,0 +1,145 @@
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//
|
||||
// ********************************************************************
|
||||
// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// --------------------------------------------------------------------------------
|
||||
// MONTE CARLO SIMULATION OF REALISTIC GEOMETRY FROM MICROSCOPES IMAGES
|
||||
//
|
||||
// Authors and contributors:
|
||||
// P. Barberet, S. Incerti, N. H. Tran, L. Morelli
|
||||
//
|
||||
// University of Bordeaux, CNRS, LP2i, UMR5797, Gradignan, France
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||||
//
|
||||
// If you use this code, please cite the following publication:
|
||||
// P. Barberet et al.,
|
||||
// "Monte-Carlo dosimetry on a realistic cell monolayer
|
||||
// geometry exposed to alpha particles."
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// Ph. Barberet et al 2012 Phys. Med. Biol. 57 2189
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// doi: 110.1088/0031-9155/57/8/2189
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// --------------------------------------------------------------------------------
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#ifndef CellParameterisation_H
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#define CellParameterisation_H 1
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#include "G4VPVParameterisation.hh"
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#include "G4VPhysicalVolume.hh"
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#include "G4LogicalVolume.hh"
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#include "G4VisAttributes.hh"
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#include "G4SystemOfUnits.hh"
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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class CellParameterisation : public G4VPVParameterisation
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{
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public:
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explicit CellParameterisation
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(G4String fileName,
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G4Material *RedMat, G4Material *GreenMat, G4Material *BlueMat,
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G4double shiftX, G4double shiftY, G4double shiftZ);
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~CellParameterisation() override;
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void ComputeTransformation
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(const G4int copyNo, G4VPhysicalVolume *physVol) const override;
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G4Material *ComputeMaterial (const G4int copyNo,
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G4VPhysicalVolume *physVol,
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const G4VTouchable *) override;
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inline auto GetPhantomTotalPixels() const { return fPhantomTotalPixels; }
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inline auto GetRedTotalPixels() const { return fRedTotalPixels; }
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inline auto GetGreenTotalPixels() const { return fGreenTotalPixels; }
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inline auto GetBlueTotalPixels() const { return fBlueTotalPixels; }
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inline auto GetPixelSizeX() const { return fDimCellBoxX; }
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inline auto GetPixelSizeY() const { return fDimCellBoxY; }
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inline auto GetPixelSizeZ() const { return fDimCellBoxZ; }
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inline auto GetRedMass() const { return fRedMass; }
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inline auto GetGreenMass() const { return fGreenMass; }
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inline auto GetBlueMass() const { return fBlueMass; }
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inline auto GetVoxelThreeVector(G4int i) const { return fMapCell[i]; }
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inline auto GetVoxelThreeVectorPixel(G4int i) const { return fMapCellPxl[i]; }
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inline auto GetVoxelThreeVectorOriginal(G4int i) const { return fMapCellOriginal[i]; }
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inline auto GetMaterial(G4int i) const { return fMaterial[i]; }
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// Singleton
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static CellParameterisation *Instance()
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{
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return gInstance;
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}
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private:
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void Initialize(const G4String&);
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static CellParameterisation *gInstance;
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G4double fDimCellBoxX = 0;
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G4double fDimCellBoxY = 0;
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G4double fDimCellBoxZ = 0;
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G4double fSizeRealX = 0;
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G4double fSizeRealY = 0;
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G4double fSizeRealZ = 0;
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G4Material *fRedMaterial = nullptr;
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G4Material *fGreenMaterial = nullptr;
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G4Material *fBlueMaterial = nullptr;
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G4double fShiftX = 0.;
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G4double fShiftY = 0.;
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G4double fShiftZ = 0.;
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G4VisAttributes *fRedAttributes = nullptr;
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G4VisAttributes *fGreenAttributes = nullptr;
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G4VisAttributes *fBlueAttributes = nullptr;
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G4ThreeVector *fMapCell = nullptr; // VOXEL COORDINATES
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G4ThreeVector *fMapCellPxl = nullptr;// VOXEL COORDINATES IN PIXEL, NO SHIFT
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G4ThreeVector *fMapCellOriginal = nullptr; // VOXEL COORDINATES (original space)
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G4int *fMaterial = nullptr; // MATERIAL
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G4int fPhantomTotalPixels = 0;
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G4int fRedTotalPixels = 0;
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G4int fGreenTotalPixels = 0;
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G4int fBlueTotalPixels = 0;
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G4double fRedMass = 0.;
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G4double fGreenMass = 0.;
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G4double fBlueMass = 0.;
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char fRealUnit;
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G4double fOffsetX = 0.;
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G4double fOffsetY = 0.;
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G4double fOffsetZ = 0.;
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};
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#endif
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@@ -0,0 +1,133 @@
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||||
//
|
||||
// ********************************************************************
|
||||
// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// --------------------------------------------------------------------------------
|
||||
// MONTE CARLO SIMULATION OF REALISTIC GEOMETRY FROM MICROSCOPES IMAGES
|
||||
//
|
||||
// Authors and contributors:
|
||||
// P. Barberet, S. Incerti, N. H. Tran, L. Morelli
|
||||
//
|
||||
// University of Bordeaux, CNRS, LP2i, UMR5797, Gradignan, France
|
||||
//
|
||||
// If you use this code, please cite the following publication:
|
||||
// P. Barberet et al.,
|
||||
// "Monte-Carlo dosimetry on a realistic cell monolayer
|
||||
// geometry exposed to alpha particles."
|
||||
// Ph. Barberet et al 2012 Phys. Med. Biol. 57 2189
|
||||
// doi: 110.1088/0031-9155/57/8/2189
|
||||
// --------------------------------------------------------------------------------
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||||
|
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#ifndef DetectorConstruction_h
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#define DetectorConstruction_h 1
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#include "CellParameterisation.hh"
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#include "G4VUserDetectorConstruction.hh"
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#include "G4Box.hh"
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#include "G4Region.hh"
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#include "G4PVPlacement.hh"
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#include "G4PVParameterised.hh"
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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|
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class DetectorMessenger;
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|
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
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|
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class DetectorConstruction : public G4VUserDetectorConstruction {
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public:
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DetectorConstruction();
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~DetectorConstruction() override = default;
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G4VPhysicalVolume *Construct() override;
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|
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inline auto *GetLogicalMedium() const { return fLogicMedium; };
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void SetTargetMaterial(const G4String&);
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void SetRedDensity(const G4double&);
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void SetGreenDensity(const G4double&);
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void SetBlueDensity(const G4double&);
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void SetShiftX(const G4double&);
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void SetShiftY(const G4double&);
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void SetShiftZ(const G4double&);
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void SetMediumSizeXY(const G4double&);
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void SetMediumSizeZ(const G4double&);
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|
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void SetWorldSizeXY(const G4double&);
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void SetWorldSizeZ(const G4double&);
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|
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void SetPhantomFileName(const G4String&);
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private:
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void DefineMaterials();
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|
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G4VPhysicalVolume *ConstructLine();
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G4double fDensityRed = 1.0;
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G4double fDensityGreen = 1.0;
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G4double fDensityBlue = 1.0;
|
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|
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G4double fShiftX = 0.*um;
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G4double fShiftY = 0.*um;
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G4double fShiftZ = 0.*um;
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|
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G4double fWorldSizeXY = 0.;
|
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G4double fWorldSizeZ = 0.;
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|
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G4double fMediumSizeXY = 0.;
|
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G4double fMediumSizeZ = 0.;
|
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|
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G4Material *fDefaultMaterial = nullptr;
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G4Material *fMediumMaterial = nullptr;
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G4Material *fRedMaterial = nullptr;
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G4Material *fGreenMaterial = nullptr;
|
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G4Material *fBlueMaterial = nullptr;
|
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G4Material *fPhantomMaterial = nullptr;
|
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|
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G4VPhysicalVolume *fPhysiWorld = nullptr;
|
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G4LogicalVolume *fLogicWorld = nullptr;
|
||||
G4Box *fSolidWorld = nullptr;
|
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|
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G4VPhysicalVolume *fPhysiMedium = nullptr;
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G4LogicalVolume *fLogicMedium = nullptr;
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G4Box *fSolidMedium = nullptr;
|
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|
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G4VPhysicalVolume *fPhysiPhantom = nullptr;
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G4LogicalVolume *fLogicPhantom = nullptr;
|
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G4Box *fSolidPhantom = nullptr;
|
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CellParameterisation *fPhantomParam = nullptr;
|
||||
|
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DetectorMessenger* fDetectorMessenger = nullptr;
|
||||
|
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G4String fPhantomFileName = "";
|
||||
G4Region* fPhantomRegion = nullptr;
|
||||
};
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,89 @@
|
||||
//
|
||||
// ********************************************************************
|
||||
// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// --------------------------------------------------------------------------------
|
||||
// MONTE CARLO SIMULATION OF REALISTIC GEOMETRY FROM MICROSCOPES IMAGES
|
||||
//
|
||||
// Authors and contributors:
|
||||
// P. Barberet, S. Incerti, N. H. Tran, L. Morelli
|
||||
//
|
||||
// University of Bordeaux, CNRS, LP2i, UMR5797, Gradignan, France
|
||||
//
|
||||
// If you use this code, please cite the following publication:
|
||||
// P. Barberet et al.,
|
||||
// "Monte-Carlo dosimetry on a realistic cell monolayer
|
||||
// geometry exposed to alpha particles."
|
||||
// Ph. Barberet et al 2012 Phys. Med. Biol. 57 2189
|
||||
// doi: 110.1088/0031-9155/57/8/2189
|
||||
// --------------------------------------------------------------------------------
|
||||
|
||||
#ifndef DetectorMessenger_h
|
||||
#define DetectorMessenger_h 1
|
||||
|
||||
#include "G4UImessenger.hh"
|
||||
|
||||
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
|
||||
|
||||
class DetectorConstruction;
|
||||
class G4UIcmdWithAString;
|
||||
class G4UIcmdWithADoubleAndUnit;
|
||||
|
||||
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
|
||||
|
||||
class DetectorMessenger: public G4UImessenger
|
||||
{
|
||||
public:
|
||||
|
||||
explicit DetectorMessenger(DetectorConstruction*);
|
||||
~DetectorMessenger() override;
|
||||
|
||||
void SetNewValue(G4UIcommand*, G4String) override;
|
||||
|
||||
private:
|
||||
|
||||
DetectorConstruction* fDetector = nullptr;
|
||||
|
||||
G4UIdirectory* fPhantomDir = nullptr;
|
||||
G4UIdirectory* fWorldDir = nullptr;
|
||||
|
||||
G4UIcmdWithAString* fNameCmd = nullptr;
|
||||
G4UIcmdWithAString* fMatCmd = nullptr;
|
||||
|
||||
G4UIcmdWithADoubleAndUnit* fDenRedCmd = nullptr;
|
||||
G4UIcmdWithADoubleAndUnit* fDenGreenCmd = nullptr;
|
||||
G4UIcmdWithADoubleAndUnit* fDenBlueCmd = nullptr;
|
||||
|
||||
G4UIcmdWithADoubleAndUnit* fShiftXCmd = nullptr;
|
||||
G4UIcmdWithADoubleAndUnit* fShiftYCmd = nullptr;
|
||||
G4UIcmdWithADoubleAndUnit* fShiftZCmd = nullptr;
|
||||
|
||||
G4UIcmdWithADoubleAndUnit* fMediumSizeXYCmd = nullptr;
|
||||
G4UIcmdWithADoubleAndUnit* fMediumSizeZCmd = nullptr;
|
||||
|
||||
G4UIcmdWithADoubleAndUnit* fWorldSizeXYCmd = nullptr;
|
||||
G4UIcmdWithADoubleAndUnit* fWorldSizeZCmd = nullptr;
|
||||
};
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,63 @@
|
||||
//
|
||||
// ********************************************************************
|
||||
// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// --------------------------------------------------------------------------------
|
||||
// MONTE CARLO SIMULATION OF REALISTIC GEOMETRY FROM MICROSCOPES IMAGES
|
||||
//
|
||||
// Authors and contributors:
|
||||
// P. Barberet, S. Incerti, N. H. Tran, L. Morelli
|
||||
//
|
||||
// University of Bordeaux, CNRS, LP2i, UMR5797, Gradignan, France
|
||||
//
|
||||
// If you use this code, please cite the following publication:
|
||||
// P. Barberet et al.,
|
||||
// "Monte-Carlo dosimetry on a realistic cell monolayer
|
||||
// geometry exposed to alpha particles."
|
||||
// Ph. Barberet et al 2012 Phys. Med. Biol. 57 2189
|
||||
// doi: 110.1088/0031-9155/57/8/2189
|
||||
// --------------------------------------------------------------------------------
|
||||
|
||||
#ifndef EventAction_h
|
||||
#define EventAction_h 1
|
||||
|
||||
#include "G4UserEventAction.hh"
|
||||
|
||||
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
|
||||
|
||||
class RunAction;
|
||||
|
||||
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
|
||||
|
||||
class EventAction : public G4UserEventAction
|
||||
{
|
||||
public:
|
||||
explicit EventAction();
|
||||
~EventAction() override;
|
||||
|
||||
void BeginOfEventAction(const G4Event*) override;
|
||||
void EndOfEventAction(const G4Event*) override;
|
||||
};
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,61 @@
|
||||
//
|
||||
// ********************************************************************
|
||||
// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// --------------------------------------------------------------------------------
|
||||
// MONTE CARLO SIMULATION OF REALISTIC GEOMETRY FROM MICROSCOPES IMAGES
|
||||
//
|
||||
// Authors and contributors:
|
||||
// P. Barberet, S. Incerti, N. H. Tran, L. Morelli
|
||||
//
|
||||
// University of Bordeaux, CNRS, LP2i, UMR5797, Gradignan, France
|
||||
//
|
||||
// If you use this code, please cite the following publication:
|
||||
// P. Barberet et al.,
|
||||
// "Monte-Carlo dosimetry on a realistic cell monolayer
|
||||
// geometry exposed to alpha particles."
|
||||
// Ph. Barberet et al 2012 Phys. Med. Biol. 57 2189
|
||||
// doi: 110.1088/0031-9155/57/8/2189
|
||||
// --------------------------------------------------------------------------------
|
||||
|
||||
#ifndef PhysicsList_h
|
||||
#define PhysicsList_h 1
|
||||
|
||||
#include "G4VModularPhysicsList.hh"
|
||||
|
||||
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
|
||||
|
||||
class PhysicsList: public G4VModularPhysicsList
|
||||
{
|
||||
public:
|
||||
|
||||
explicit PhysicsList();
|
||||
~PhysicsList() override;
|
||||
|
||||
void SetCuts() override;
|
||||
|
||||
private:
|
||||
};
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,67 @@
|
||||
//
|
||||
// ********************************************************************
|
||||
// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// --------------------------------------------------------------------------------
|
||||
// MONTE CARLO SIMULATION OF REALISTIC GEOMETRY FROM MICROSCOPES IMAGES
|
||||
//
|
||||
// Authors and contributors:
|
||||
// P. Barberet, S. Incerti, N. H. Tran, L. Morelli
|
||||
//
|
||||
// University of Bordeaux, CNRS, LP2i, UMR5797, Gradignan, France
|
||||
//
|
||||
// If you use this code, please cite the following publication:
|
||||
// P. Barberet et al.,
|
||||
// "Monte-Carlo dosimetry on a realistic cell monolayer
|
||||
// geometry exposed to alpha particles."
|
||||
// Ph. Barberet et al 2012 Phys. Med. Biol. 57 2189
|
||||
// doi: 110.1088/0031-9155/57/8/2189
|
||||
// --------------------------------------------------------------------------------
|
||||
|
||||
#ifndef PrimaryGeneratorAction_h
|
||||
#define PrimaryGeneratorAction_h 1
|
||||
|
||||
#include "CellParameterisation.hh"
|
||||
|
||||
#include "G4VUserPrimaryGeneratorAction.hh"
|
||||
|
||||
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
|
||||
|
||||
class G4GeneralParticleSource;
|
||||
|
||||
//....oooOO0OOooo........oooOO0OOooo.......eant4 units.oooOO0OOooo........oooOO0OOooo....
|
||||
|
||||
class PrimaryGeneratorAction : public G4VUserPrimaryGeneratorAction
|
||||
{
|
||||
public:
|
||||
explicit PrimaryGeneratorAction();
|
||||
~PrimaryGeneratorAction() override;
|
||||
|
||||
void GeneratePrimaries(G4Event*) override;
|
||||
|
||||
private:
|
||||
G4GeneralParticleSource* fGPS = nullptr;
|
||||
};
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,72 @@
|
||||
//
|
||||
// ********************************************************************
|
||||
// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// --------------------------------------------------------------------------------
|
||||
// MONTE CARLO SIMULATION OF REALISTIC GEOMETRY FROM MICROSCOPES IMAGES
|
||||
//
|
||||
// Authors and contributors:
|
||||
// P. Barberet, S. Incerti, N. H. Tran, L. Morelli
|
||||
//
|
||||
// University of Bordeaux, CNRS, LP2i, UMR5797, Gradignan, France
|
||||
//
|
||||
// If you use this code, please cite the following publication:
|
||||
// P. Barberet et al.,
|
||||
// "Monte-Carlo dosimetry on a realistic cell monolayer
|
||||
// geometry exposed to alpha particles."
|
||||
// Ph. Barberet et al 2012 Phys. Med. Biol. 57 2189
|
||||
// doi: 110.1088/0031-9155/57/8/2189
|
||||
// --------------------------------------------------------------------------------
|
||||
|
||||
#ifndef RunAction_h
|
||||
#define RunAction_h 1
|
||||
|
||||
#include "DetectorConstruction.hh"
|
||||
|
||||
#include "G4UserRunAction.hh"
|
||||
#include "G4AnalysisManager.hh"
|
||||
|
||||
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
|
||||
|
||||
class RunAction : public G4UserRunAction
|
||||
{
|
||||
public:
|
||||
|
||||
explicit RunAction();
|
||||
~RunAction() override;
|
||||
|
||||
void BeginOfRunAction(const G4Run*) override;
|
||||
void EndOfRunAction(const G4Run*) override;
|
||||
|
||||
void AddDoseBox(G4int i, G4double x) {fVoxelEnergy[i] +=x;}
|
||||
G4double GetDoseBox(G4int i) {return fVoxelEnergy[i];}
|
||||
|
||||
private:
|
||||
|
||||
const CellParameterisation * fMyPhantomParam = nullptr;
|
||||
G4double * fVoxelEnergy = nullptr;
|
||||
G4int fNbVoxels = 0;
|
||||
};
|
||||
|
||||
#endif
|
||||
@@ -0,0 +1,64 @@
|
||||
//
|
||||
// ********************************************************************
|
||||
// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// --------------------------------------------------------------------------------
|
||||
// MONTE CARLO SIMULATION OF REALISTIC GEOMETRY FROM MICROSCOPES IMAGES
|
||||
//
|
||||
// Authors and contributors:
|
||||
// P. Barberet, S. Incerti, N. H. Tran, L. Morelli
|
||||
//
|
||||
// University of Bordeaux, CNRS, LP2i, UMR5797, Gradignan, France
|
||||
//
|
||||
// If you use this code, please cite the following publication:
|
||||
// P. Barberet et al.,
|
||||
// "Monte-Carlo dosimetry on a realistic cell monolayer
|
||||
// geometry exposed to alpha particles."
|
||||
// Ph. Barberet et al 2012 Phys. Med. Biol. 57 2189
|
||||
// doi: 110.1088/0031-9155/57/8/2189
|
||||
// --------------------------------------------------------------------------------
|
||||
|
||||
#ifndef SteppingAction_h
|
||||
#define SteppingAction_h 1
|
||||
|
||||
#include "RunAction.hh"
|
||||
|
||||
#include "G4UserSteppingAction.hh"
|
||||
|
||||
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo....
|
||||
|
||||
class SteppingAction : public G4UserSteppingAction
|
||||
{
|
||||
public:
|
||||
explicit SteppingAction(RunAction*);
|
||||
~SteppingAction() override = default;
|
||||
|
||||
void UserSteppingAction(const G4Step*) override;
|
||||
|
||||
private:
|
||||
RunAction* fRunAction = nullptr;
|
||||
const CellParameterisation * fMyPhantomParam = nullptr;
|
||||
};
|
||||
|
||||
#endif
|
||||
Reference in New Issue
Block a user