added files

docker/Dockerfile

@@ -96,7 +96,21 @@ ADD minicalosim /root/minicalosim
 RUN cd  /root/minicalosim && git checkout $COMMIT && \
     mkdir -p build && cd build && rm -rf * && cmake ../ && make -j4 &&\  
     cp minicalo* ../bind/G4Calo.py /usr/local/lib/python3.8/dist-packages/
+
+
+CMD ["start-notebook.py"]
+
+RUN cp /root/minicalosim/docker/start-notebook.py /usr/local/bin/
+RUN cp /root/minicalosim/docker/start-notebook.sh /usr/local/bin/
+RUN cp /root/minicalosim/docker/start-singleuser.py /usr/local/bin/
+RUN cp /root/minicalosim/docker/start-singleuser.sh /usr/local/bin/
+
+#USER root
+##RUN fix-permissions /etc/jupyter/
+
+
 # clean up
 RUN rm -rf /root/minicalosim
 
+#USER ${NB_UID}
 

docker/start-notebook.py

@@ -0,0 +1,44 @@
+#!/usr/bin/env python
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+import os
+import shlex
+import sys
+
+# If we are in a JupyterHub, we pass on to `start-singleuser.py` instead so it does the right thing
+if "JUPYTERHUB_API_TOKEN" in os.environ:
+    print(
+        "WARNING: using start-singleuser.py instead of start-notebook.py to start a server associated with JupyterHub."
+    )
+    command = ["/usr/local/bin/start-singleuser.py"] + sys.argv[1:]
+    os.execvp(command[0], command)
+
+
+# Entrypoint is start.sh
+command = []
+
+# If we want to survive restarts, launch the command using `run-one-constantly`
+if os.environ.get("RESTARTABLE") == "yes":
+    command.append("run-one-constantly")
+
+# We always launch a jupyter subcommand from this script
+command.append("jupyter")
+
+# Launch the configured subcommand.
+# Note that this should be a single string, so we don't split it.
+# We default to `lab`.
+jupyter_command = os.environ.get("DOCKER_STACKS_JUPYTER_CMD", "lab")
+command.append(jupyter_command)
+
+# Append any optional NOTEBOOK_ARGS we were passed in.
+# This is supposed to be multiple args passed on to the notebook command,
+# so we split it correctly with shlex
+if "NOTEBOOK_ARGS" in os.environ:
+    command += shlex.split(os.environ["NOTEBOOK_ARGS"])
+
+# Pass through any other args we were passed on the command line
+command += sys.argv[1:]
+
+# Execute the command!
+print("Executing: " + " ".join(command))
+os.execvp(command[0], command)

docker/start-notebook.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+# Shim to emit warning and call start-notebook.py
+echo "WARNING: Use start-notebook.py instead"
+
+exec /usr/local/bin/start-notebook.py "$@"

docker/start-singleuser.py

@@ -0,0 +1,26 @@
+#!/usr/bin/env python
+# Copyright (c) Jupyter Development Team.
+# Distributed under the terms of the Modified BSD License.
+import os
+import shlex
+import sys
+
+# Entrypoint is start.sh
+command = ["jupyterhub-singleuser"]
+
+# set default ip to 0.0.0.0
+if "--ip=" not in os.environ.get("NOTEBOOK_ARGS", ""):
+    command.append("--ip=0.0.0.0")
+
+# Append any optional NOTEBOOK_ARGS we were passed in.
+# This is supposed to be multiple args passed on to the notebook command,
+# so we split it correctly with shlex
+if "NOTEBOOK_ARGS" in os.environ:
+    command += shlex.split(os.environ["NOTEBOOK_ARGS"])
+
+# Pass any other args we have been passed through
+command += sys.argv[1:]
+
+# Execute the command!
+print("Executing: " + " ".join(command))
+os.execvp(command[0], command)

docker/start-singleuser.sh

@@ -0,0 +1,5 @@
+#!/bin/bash
+# Shim to emit warning and call start-singleuser.py
+echo "WARNING: Use start-singleuser.py instead"
+
+exec /usr/local/bin/start-singleuser.py "$@"