lars
25718f175e
Removes unused imports and an ambiguous variable name, narrows Optional types before use so ty's flow analysis is satisfied, swaps sum() over polars expressions for pl.sum_horizontal to avoid the Literal[0] fallback type, and converts numpy bin edges to plain lists before passing to matplotlib's hist (whose stub only accepts Sequence[float]). Also applies ruff format across the repo, which had drifted out of sync with the formatter. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>
483 lines
16 KiB
Python
483 lines
16 KiB
Python
import os
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from scripts import bump_dataset_version
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plan_bump_gen = bump_dataset_version.plan_bump_gen
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plan_bump_schema = bump_dataset_version.plan_bump_schema
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apply_bump = bump_dataset_version.apply_bump
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plan_update_manifest = bump_dataset_version.plan_update_manifest
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apply_update_manifest = bump_dataset_version.apply_update_manifest
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plan_create_manifest = bump_dataset_version.plan_create_manifest
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apply_create_manifest = bump_dataset_version.apply_create_manifest
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check_holdout_overlap = bump_dataset_version.check_holdout_overlap
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def test_bump_gen_starts_at_gen1_when_none_exist(tmp_path):
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dirs, log_line = plan_bump_gen(
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tmp_path, "steps", "first generation", None, "2026-01-01"
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)
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assert dirs == [
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tmp_path / "raw" / "steps" / "gen1",
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tmp_path / "processed" / "steps" / "gen1" / "schema1",
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]
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assert "`gen1`" in log_line
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assert "first generation" in log_line
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def test_bump_gen_increments_past_existing(tmp_path):
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(tmp_path / "raw" / "steps" / "gen1").mkdir(parents=True)
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(tmp_path / "raw" / "steps" / "gen2").mkdir(parents=True)
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dirs, _ = plan_bump_gen(tmp_path, "steps", "next gen", None, "2026-01-01")
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assert dirs[0] == tmp_path / "raw" / "steps" / "gen3"
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def test_bump_gen_checks_both_raw_and_processed_trees(tmp_path):
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# processed/ is ahead of raw/ — next gen must still be past the max of both.
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(tmp_path / "raw" / "steps" / "gen1").mkdir(parents=True)
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(tmp_path / "processed" / "steps" / "gen4" / "schema1").mkdir(parents=True)
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dirs, _ = plan_bump_gen(tmp_path, "steps", "next gen", None, "2026-01-01")
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assert dirs[0] == tmp_path / "raw" / "steps" / "gen5"
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def test_bump_gen_kinds_are_independent(tmp_path):
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(tmp_path / "raw" / "steps" / "gen5").mkdir(parents=True)
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dirs, _ = plan_bump_gen(tmp_path, "hits", "first hits gen", None, "2026-01-01")
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assert dirs[0] == tmp_path / "raw" / "hits" / "gen1"
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def test_bump_schema_starts_at_schema1_for_a_fresh_gen(tmp_path):
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(tmp_path / "raw" / "steps" / "gen1").mkdir(parents=True)
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dirs, log_line = plan_bump_schema(
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tmp_path, "steps", "gen1", "added e_sec column", None, "2026-01-01"
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)
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assert dirs == [tmp_path / "processed" / "steps" / "gen1" / "schema1"]
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assert "`gen1`/`schema1`" in log_line
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def test_bump_schema_increments_within_its_gen(tmp_path):
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(tmp_path / "processed" / "steps" / "gen1" / "schema1").mkdir(parents=True)
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(tmp_path / "processed" / "steps" / "gen1" / "schema2").mkdir(parents=True)
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dirs, _ = plan_bump_schema(
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tmp_path, "steps", "gen1", "next schema", None, "2026-01-01"
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)
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assert dirs == [tmp_path / "processed" / "steps" / "gen1" / "schema3"]
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def test_bump_schema_does_not_see_other_gens_schemas(tmp_path):
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(tmp_path / "processed" / "steps" / "gen1" / "schema5").mkdir(parents=True)
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(tmp_path / "raw" / "steps" / "gen2").mkdir(parents=True)
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dirs, _ = plan_bump_schema(
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tmp_path, "steps", "gen2", "fresh schema for gen2", None, "2026-01-01"
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)
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assert dirs == [tmp_path / "processed" / "steps" / "gen2" / "schema1"]
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def test_bump_schema_rejects_nonexistent_gen(tmp_path):
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try:
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plan_bump_schema(tmp_path, "steps", "gen9", "oops", None, "2026-01-01")
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assert False, "expected SystemExit"
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except SystemExit:
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pass
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def test_bump_gen_to_specific_tag(tmp_path):
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(tmp_path / "raw" / "steps" / "gen1").mkdir(parents=True)
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dirs, log_line = plan_bump_gen(
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tmp_path, "steps", "jump to gen5", None, "2026-01-01", target="gen5"
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)
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assert dirs[0] == tmp_path / "raw" / "steps" / "gen5"
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assert "`gen5`" in log_line
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def test_bump_gen_rejects_invalid_to_tag(tmp_path):
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try:
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plan_bump_gen(tmp_path, "steps", "bad tag", None, "2026-01-01", target="v5")
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assert False, "expected SystemExit"
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except SystemExit:
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pass
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def test_bump_schema_to_specific_tag(tmp_path):
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(tmp_path / "raw" / "steps" / "gen1").mkdir(parents=True)
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(tmp_path / "processed" / "steps" / "gen1" / "schema1").mkdir(parents=True)
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dirs, log_line = plan_bump_schema(
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tmp_path,
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"steps",
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"gen1",
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"jump to schema5",
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None,
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"2026-01-01",
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target="schema5",
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)
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assert dirs == [tmp_path / "processed" / "steps" / "gen1" / "schema5"]
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assert "`schema5`" in log_line
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def test_bump_schema_rejects_invalid_to_tag(tmp_path):
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(tmp_path / "raw" / "steps" / "gen1").mkdir(parents=True)
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try:
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plan_bump_schema(
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tmp_path, "steps", "gen1", "bad tag", None, "2026-01-01", target="v3"
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)
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assert False, "expected SystemExit"
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except SystemExit:
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pass
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def test_apply_bump_creates_dirs_and_appends_log(tmp_path):
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dirs, log_line = plan_bump_gen(tmp_path, "steps", "reason A", "alice", "2026-01-01")
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apply_bump(tmp_path, dirs, log_line)
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for d in dirs:
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assert d.is_dir()
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text = (tmp_path / "VERSIONS.md").read_text()
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assert "reason A" in text
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assert "alice" in text
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def test_apply_bump_appends_without_clobbering_existing_log(tmp_path):
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(tmp_path / "VERSIONS.md").write_text("# Dataset versions\n\n- existing entry\n")
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dirs, log_line = plan_bump_gen(tmp_path, "steps", "reason B", None, "2026-01-02")
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apply_bump(tmp_path, dirs, log_line)
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text = (tmp_path / "VERSIONS.md").read_text()
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assert "existing entry" in text
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assert "reason B" in text
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# ---------------------------------------------------------------------------
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# update-manifest
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# ---------------------------------------------------------------------------
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def _make_parquet(path):
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"""Create a zero-byte stand-in for a parquet file."""
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path.parent.mkdir(parents=True, exist_ok=True)
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path.touch()
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def test_update_manifest_bumps_to_specified_schema(tmp_path):
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parquet = (
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tmp_path
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/ "processed"
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/ "steps"
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/ "gen1"
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/ "schema2"
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/ "pbwo4"
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/ "shard-000.parquet"
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)
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_make_parquet(parquet)
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manifest_dir = tmp_path / "pools" / "pbwo4"
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manifest_dir.mkdir(parents=True)
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manifest = manifest_dir / "full.manifest"
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old_rel = "../../processed/steps/gen1/schema1/pbwo4/shard-000.parquet"
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manifest.write_text(old_rel + "\n")
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lines, missing = plan_update_manifest(manifest, "schema2")
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assert missing == []
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# exactly one data line was updated
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changed = [(old, new) for old, new in lines if new is not None]
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assert len(changed) == 1
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assert "schema2" in changed[0][1]
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assert "schema1" not in changed[0][1]
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def test_update_manifest_auto_detects_highest_schema(tmp_path):
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for schema in ("schema1", "schema2", "schema3"):
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d = tmp_path / "processed" / "steps" / "gen1" / schema / "pbwo4"
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d.mkdir(parents=True)
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parquet = (
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tmp_path
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/ "processed"
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/ "steps"
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/ "gen1"
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/ "schema3"
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/ "pbwo4"
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/ "shard-000.parquet"
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)
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parquet.touch()
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manifest_dir = tmp_path / "pools" / "pbwo4"
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manifest_dir.mkdir(parents=True)
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manifest = manifest_dir / "full.manifest"
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manifest.write_text("../../processed/steps/gen1/schema1/pbwo4/shard-000.parquet\n")
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lines, missing = plan_update_manifest(manifest, None)
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assert missing == []
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changed = [(old, new) for old, new in lines if new is not None]
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assert "schema3" in changed[0][1]
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def test_update_manifest_reports_missing_targets(tmp_path):
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manifest_dir = tmp_path / "pools" / "pbwo4"
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manifest_dir.mkdir(parents=True)
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manifest = manifest_dir / "full.manifest"
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manifest.write_text("../../processed/steps/gen1/schema1/pbwo4/shard-000.parquet\n")
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# schema2 dir exists but the parquet file does not
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(tmp_path / "processed" / "steps" / "gen1" / "schema2").mkdir(parents=True)
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lines, missing = plan_update_manifest(manifest, "schema2")
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assert len(missing) == 1
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assert "schema2" in str(missing[0])
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def test_update_manifest_skips_already_at_target(tmp_path):
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parquet = (
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tmp_path
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/ "processed"
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/ "steps"
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/ "gen1"
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/ "schema2"
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/ "pbwo4"
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/ "shard-000.parquet"
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)
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_make_parquet(parquet)
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manifest_dir = tmp_path / "pools" / "pbwo4"
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manifest_dir.mkdir(parents=True)
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manifest = manifest_dir / "full.manifest"
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manifest.write_text("../../processed/steps/gen1/schema2/pbwo4/shard-000.parquet\n")
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lines, missing = plan_update_manifest(manifest, "schema2")
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assert missing == []
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# line is unchanged — new is None
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assert all(new is None for _, new in lines)
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def test_update_manifest_preserves_comments_and_blanks(tmp_path):
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parquet = (
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tmp_path
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/ "processed"
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/ "steps"
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/ "gen1"
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/ "schema2"
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/ "pbwo4"
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/ "shard-000.parquet"
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)
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_make_parquet(parquet)
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manifest_dir = tmp_path / "pools" / "pbwo4"
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manifest_dir.mkdir(parents=True)
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manifest = manifest_dir / "full.manifest"
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content = "# header\n\n../../processed/steps/gen1/schema1/pbwo4/shard-000.parquet\n"
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manifest.write_text(content)
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lines, _ = plan_update_manifest(manifest, "schema2")
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assert lines[0] == ("# header", None)
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assert lines[1] == ("", None)
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assert lines[2][1] is not None # the data line was updated
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def test_update_manifest_bumps_gen(tmp_path):
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parquet = (
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tmp_path
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/ "processed"
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/ "steps"
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/ "gen2"
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/ "schema1"
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/ "pbwo4"
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/ "shard-000.parquet"
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)
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_make_parquet(parquet)
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manifest_dir = tmp_path / "pools" / "pbwo4"
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manifest_dir.mkdir(parents=True)
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manifest = manifest_dir / "full.manifest"
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manifest.write_text("../../processed/steps/gen1/schema1/pbwo4/shard-000.parquet\n")
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lines, missing = plan_update_manifest(manifest, None, target_gen="gen2")
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assert missing == []
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changed = [(old, new) for old, new in lines if new is not None]
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assert len(changed) == 1
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assert "gen2" in changed[0][1]
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assert "gen1" not in changed[0][1]
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def test_update_manifest_bumps_gen_and_schema(tmp_path):
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parquet = (
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tmp_path
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/ "processed"
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/ "steps"
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/ "gen2"
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/ "schema3"
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/ "pbwo4"
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/ "shard-000.parquet"
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)
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_make_parquet(parquet)
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manifest_dir = tmp_path / "pools" / "pbwo4"
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manifest_dir.mkdir(parents=True)
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manifest = manifest_dir / "full.manifest"
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manifest.write_text("../../processed/steps/gen1/schema1/pbwo4/shard-000.parquet\n")
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lines, missing = plan_update_manifest(manifest, "schema3", target_gen="gen2")
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assert missing == []
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changed = [(old, new) for old, new in lines if new is not None]
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assert len(changed) == 1
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assert "gen2" in changed[0][1]
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assert "schema3" in changed[0][1]
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def test_apply_update_manifest_writes_file(tmp_path):
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parquet = (
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tmp_path
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/ "processed"
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/ "steps"
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/ "gen1"
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/ "schema2"
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/ "pbwo4"
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/ "shard-000.parquet"
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)
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_make_parquet(parquet)
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manifest_dir = tmp_path / "pools" / "pbwo4"
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manifest_dir.mkdir(parents=True)
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manifest = manifest_dir / "full.manifest"
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manifest.write_text("../../processed/steps/gen1/schema1/pbwo4/shard-000.parquet\n")
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plan, _ = plan_update_manifest(manifest, "schema2")
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apply_update_manifest(manifest, plan)
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written = manifest.read_text()
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assert "schema2" in written
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assert "schema1" not in written
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# ---------------------------------------------------------------------------
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# create-manifest
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# ---------------------------------------------------------------------------
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def test_create_manifest_writes_relative_paths(tmp_path):
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pq1 = (
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tmp_path
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/ "processed"
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/ "steps"
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/ "gen1"
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/ "schema2"
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/ "pbwo4"
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/ "shard-000.parquet"
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)
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pq2 = (
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tmp_path
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/ "processed"
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/ "steps"
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/ "gen1"
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/ "schema2"
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/ "pbwo4"
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/ "shard-001.parquet"
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)
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_make_parquet(pq1)
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_make_parquet(pq2)
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output = tmp_path / "pools" / "pbwo4" / "train.manifest"
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lines, missing, resolved = plan_create_manifest(output, [pq1, pq2])
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assert missing == []
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assert len(lines) == 2
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assert all("schema2" in line for line in lines)
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assert all(not line.startswith("/") for line in lines)
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assert resolved == [pq1.resolve(), pq2.resolve()]
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apply_create_manifest(output, lines)
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assert output.exists()
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written = output.read_text().strip().splitlines()
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assert len(written) == 2
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def test_create_manifest_reports_missing_files(tmp_path):
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ghost = tmp_path / "processed" / "gen1" / "schema2" / "shard-000.parquet"
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output = tmp_path / "pools" / "full.manifest"
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lines, missing, _ = plan_create_manifest(output, [ghost])
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assert len(missing) == 1
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assert missing[0] == ghost.resolve()
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def test_create_manifest_creates_parent_dirs(tmp_path):
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pq = tmp_path / "a.parquet"
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pq.touch()
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output = tmp_path / "deep" / "nested" / "pool.manifest"
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lines, _, _ = plan_create_manifest(output, [pq])
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apply_create_manifest(output, lines)
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assert output.exists()
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# ---------------------------------------------------------------------------
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# check_holdout_overlap
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# ---------------------------------------------------------------------------
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def test_no_overlap_check_when_no_holdout_involved(tmp_path):
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pool_dir = tmp_path / "pools" / "pbwo4"
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pool_dir.mkdir(parents=True)
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pq = tmp_path / "a.parquet"
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pq.touch()
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# writing full.manifest, no holdout.manifest exists
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output = pool_dir / "full.manifest"
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overlaps = check_holdout_overlap(output, [pq.resolve()])
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assert overlaps == []
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def test_overlap_detected_when_creating_holdout(tmp_path):
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pool_dir = tmp_path / "pools" / "pbwo4"
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pool_dir.mkdir(parents=True)
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pq = tmp_path / "a.parquet"
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pq.touch()
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# full.manifest already lists the same file
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full = pool_dir / "full.manifest"
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full.write_text(os.path.relpath(pq.resolve(), start=pool_dir) + "\n")
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output = pool_dir / "holdout.manifest"
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overlaps = check_holdout_overlap(output, [pq.resolve()])
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assert len(overlaps) == 1
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assert overlaps[0][0] == "full.manifest"
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assert overlaps[0][1] == pq.resolve()
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def test_overlap_detected_when_holdout_already_exists(tmp_path):
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pool_dir = tmp_path / "pools" / "pbwo4"
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pool_dir.mkdir(parents=True)
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pq = tmp_path / "a.parquet"
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pq.touch()
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# holdout.manifest already lists the file
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holdout = pool_dir / "holdout.manifest"
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holdout.write_text(os.path.relpath(pq.resolve(), start=pool_dir) + "\n")
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# now creating full.manifest with the same file
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output = pool_dir / "full.manifest"
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overlaps = check_holdout_overlap(output, [pq.resolve()])
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assert len(overlaps) == 1
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assert overlaps[0][0] == "holdout.manifest"
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def test_dev_full_overlap_not_checked(tmp_path):
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pool_dir = tmp_path / "pools" / "pbwo4"
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pool_dir.mkdir(parents=True)
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pq = tmp_path / "a.parquet"
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pq.touch()
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# dev.manifest lists the same file — should not trigger a warning for full
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dev = pool_dir / "dev.manifest"
|
|
dev.write_text(os.path.relpath(pq.resolve(), start=pool_dir) + "\n")
|
|
|
|
output = pool_dir / "full.manifest"
|
|
overlaps = check_holdout_overlap(output, [pq.resolve()])
|
|
assert overlaps == []
|
|
|
|
|
|
def test_no_overlap_when_files_are_disjoint(tmp_path):
|
|
pool_dir = tmp_path / "pools" / "pbwo4"
|
|
pool_dir.mkdir(parents=True)
|
|
pq_holdout = tmp_path / "holdout.parquet"
|
|
pq_full = tmp_path / "full.parquet"
|
|
pq_holdout.touch()
|
|
pq_full.touch()
|
|
|
|
holdout = pool_dir / "holdout.manifest"
|
|
holdout.write_text(os.path.relpath(pq_holdout.resolve(), start=pool_dir) + "\n")
|
|
|
|
output = pool_dir / "full.manifest"
|
|
overlaps = check_holdout_overlap(output, [pq_full.resolve()])
|
|
assert overlaps == []
|