e5bf7c51cb
- energy_simplex_encode: warn when clipping post_E to pre_E discards recorded edep/e_sec instead of silently zeroing them - local/inv_local_frame_rotation: validate and normalize pre_dir instead of silently assuming unit norm; raise on near-zero-norm rows - train(): make --lr authoritative on resume instead of being silently overwritten by the checkpoint's optimizer/scheduler state; print and exit cleanly instead of silently training zero epochs when the checkpoint already meets --epochs; truncate metrics.csv on a fresh run instead of always appending - dwarf update-manifest: check file existence for every manifest line, not just ones whose gen/schema actually changed - pyproject.toml: dev extra now pulls in convert+analysis so the documented `uv sync --extra cpu --extra dev` + `pytest` actually passes collection Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com>