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Adds a `prediction` plot family to `giant analyze`, alongside the existing rollout-vs-reference comparison, and extends `giant predict` to make it possible: - `giant predict --coord global` gains schema v3 (`--truth/--no-truth`, default on): writes true_* physical columns and true secondary lists alongside the predictions, so the output is fully paired. - New `giant/analysis/prediction.py` builds one canonical true/pred frame (`paired_frame`) from either predict coord mode. - `catalog.py` gains 35 `pred_*` specs: marginals, 2D truth-vs-pred scatter (new `heatmap2d` kind), residuals/relative-residuals/calibration profiles, KS/bias/RMSE scorecards, n_sec + secondary-species confusion matrices, direction-alignment and constraint-violation checks, and a correlation delta. Two new Reduced kinds (`paired_hist`, `heatmap2d`) get renderers. Every spec degrades to kind="unavailable" with no --prediction given. - `condor.py`/`cli.py`: `--prediction`/`--prediction-label` on `analyze prep`/`submit`, threaded through RunMeta and every compute job. Full test suite (1162 tests), ruff, and ty all pass. Co-Authored-By: Claude Sonnet 5 <noreply@anthropic.com> Claude-Session: https://claude.ai/code/session_01PpxE9nij3ujg9XcuzvQ26q
279 lines
10 KiB
Python
279 lines
10 KiB
Python
"""Tests for giant.analysis.prediction (paired truth/pred frames for `giant predict`
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output) and the `prediction` family of catalog specs."""
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from __future__ import annotations
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import numpy as np
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import polars as pl
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import pytest
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from giant.analysis.catalog import Bundle, get_spec
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from giant.analysis.context import Context, build_context
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from giant.analysis.prediction import (
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PAIRED_SCALARS,
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PredictionSpec,
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open_prediction,
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paired_frame,
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paired_secondaries,
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prediction_secondaries,
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)
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from giant.analysis.reduce import hist2d
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from giant.analysis.sources import RolloutSpec
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from tests.test_analysis_reduce import _reference_frame, _rollout_frame
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def _global_prediction_frame() -> pl.LazyFrame:
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"""A `--coord global --truth` predict parquet, as a LazyFrame (schema per
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`giant.cli.predict`'s global-coord table, `giant/cli.py:1310-1379`)."""
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return pl.DataFrame(
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{
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"event_id": [1, 1, 2],
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"pdg": [11, 11, 22],
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"pre_x": [0.0, 0.0, 0.0],
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"pre_y": [0.0, 0.0, 0.0],
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"pre_z": [0.0, 1.0, 0.0],
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"pre_E": [100.0, 60.0, 50.0],
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"pre_dx": [0.0, 0.0, 0.0],
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"pre_dy": [0.0, 0.0, 0.0],
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"pre_dz": [1.0, 1.0, 1.0],
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"material": ["G4_PbWO4", "G4_PbWO4", "G4_Pb"],
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"layer_id": [0, 1, 0],
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"n_sec": [1, 0, 2],
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"n_sec_pred": [1, 0, 1],
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# predicted (unprefixed) values
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"step_length": [1.2, 0.9, 1.1],
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"delta_e": [42.0, 29.0, 31.0],
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"edep": [35.0, 29.0, 25.0],
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"post_dx": [0.0, 0.0, 0.0],
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"post_dy": [0.0, 0.0, 0.0],
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"post_dz": [1.0, 1.0, 1.0],
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"post_x": [0.0, 0.0, 0.0],
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"post_y": [0.0, 0.0, 0.0],
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"post_z": [1.2, 1.9, 1.1],
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"sec_pdg_list": [[22], [], [22]],
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"sec_E_list": [[5.0], [], [4.0]],
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"sec_dx_list": [[0.0], [], [0.0]],
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"sec_dy_list": [[0.0], [], [0.0]],
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"sec_dz_list": [[1.0], [], [1.0]],
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# truth
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"true_step_length": [1.0, 1.0, 1.0],
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"true_delta_e": [40.0, 30.0, 30.0],
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"true_edep": [40.0, 30.0, 20.0],
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"true_post_E": [60.0, 30.0, 20.0],
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"true_post_dx": [0.0, 0.0, 0.0],
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"true_post_dy": [0.0, 0.0, 0.0],
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"true_post_dz": [1.0, 1.0, 1.0],
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"true_post_x": [0.0, 0.0, 0.0],
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"true_post_y": [0.0, 0.0, 0.0],
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"true_post_z": [1.0, 2.0, 1.0],
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"true_e_sec": [0.0, 0.0, 10.0],
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"process": ["compt", "phot", "compt"],
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"true_sec_pdg_list": [[22], [], [22, 11]],
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"true_sec_E_list": [[6.0], [], [7.0, 3.0]],
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"true_sec_dx_list": [[0.0], [], [0.0, 1.0]],
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"true_sec_dy_list": [[0.0], [], [0.0, 0.0]],
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"true_sec_dz_list": [[1.0], [], [1.0, 0.0]],
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}
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).lazy()
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def _local_prediction_frame() -> pl.LazyFrame:
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"""A `--coord local` predict parquet — always paired, never has secondaries."""
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return pl.DataFrame(
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{
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"event_id": [1, 2],
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"pdg": [11, 22],
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"pre_x": [0.0, 0.0],
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"pre_y": [0.0, 0.0],
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"pre_z": [0.0, 0.0],
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"pre_E": [100.0, 50.0],
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"pre_dx": [0.0, 0.0],
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"pre_dy": [0.0, 0.0],
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"pre_dz": [1.0, 1.0],
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"material": ["G4_PbWO4", "G4_Pb"],
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"layer_id": [0, 0],
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"n_sec": [1, 0],
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# ALR logits: [edep_logit, sec_logit] -> softmax([z1,z2,0]) * pre_E
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"pred_log_step_length": [np.log(1.2 + 1e-6), np.log(0.9 + 1e-6)],
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"pred_edep_logit": [1.0, 0.5],
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"pred_sec_logit": [0.0, -1.0],
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"pred_post_dx": [0.0, 0.0],
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"pred_post_dy": [0.0, 0.0],
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"pred_post_dz": [1.0, 1.0],
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"pred_travel_dx": [0.0, 0.0],
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"pred_travel_dy": [0.0, 0.0],
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"pred_travel_dz": [1.0, 1.0],
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"true_log_step_length": [np.log(1.0 + 1e-6), np.log(1.0 + 1e-6)],
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"true_edep_logit": [0.8, 0.6],
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"true_sec_logit": [0.2, -2.0],
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"true_post_dx": [0.0, 0.0],
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"true_post_dy": [0.0, 0.0],
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"true_post_dz": [1.0, 1.0],
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"true_travel_dx": [0.0, 0.0],
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"true_travel_dy": [0.0, 0.0],
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"true_travel_dz": [1.0, 1.0],
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}
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).lazy()
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def test_open_prediction_detects_coord_and_truth():
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g = open_prediction(_global_prediction_frame())
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assert g.coord == "global" and g.has_truth
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loc = open_prediction(_local_prediction_frame())
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assert loc.coord == "local" and loc.has_truth
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def test_paired_frame_global_matches_source_columns():
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lf = _global_prediction_frame()
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p = paired_frame(lf, "global", has_truth=True).collect()
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assert p["pred_step_length"].to_list() == [1.2, 0.9, 1.1]
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assert p["true_step_length"].to_list() == [1.0, 1.0, 1.0]
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assert p["pred_edep"].to_list() == [35.0, 29.0, 25.0]
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assert p["true_edep"].to_list() == [40.0, 30.0, 20.0]
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# post_E isn't written directly for the prediction (energy conservation:
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# pre_E - delta_e); truth carries it verbatim.
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assert p["pred_post_E"].to_list() == pytest.approx([100.0 - 42.0, 60.0 - 29.0, 50.0 - 31.0])
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assert p["true_post_E"].to_list() == [60.0, 30.0, 20.0]
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# cos_scatter: pre_dir . post_dir, both (0,0,1) here -> 1.0
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assert p["pred_cos_scatter"].to_list() == pytest.approx([1.0, 1.0, 1.0])
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assert p["true_cos_scatter"].to_list() == pytest.approx([1.0, 1.0, 1.0])
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def test_paired_frame_local_decodes_energy_simplex():
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lf = _local_prediction_frame()
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p = paired_frame(lf, "local", has_truth=True).collect()
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# softmax([1.0, 0.0, 0.0]) * 100 for row 0's pred edep
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z = np.exp([1.0, 0.0, 0.0])
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expected_edep_0 = (z[0] / z.sum()) * 100.0
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assert p["pred_edep"][0] == pytest.approx(expected_edep_0)
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assert p["pred_step_length"][0] == pytest.approx(1.2, abs=1e-4)
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# local coord never has a meaningful cos_travel (no reconstructed post_pos)
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assert "cos_travel" not in [c.rsplit("_", 1)[-1] for c in ["pred_cos_travel"] if c in p.columns] or True
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assert "pred_cos_travel" not in p.columns
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def test_prediction_secondaries_and_pairing():
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lf = _global_prediction_frame()
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true_sec = prediction_secondaries(lf, "true").collect()
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pred_sec = prediction_secondaries(lf, "pred").collect()
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assert true_sec["pdg"].to_list() == [22, 22, 11]
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assert pred_sec["pdg"].to_list() == [22, 22]
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pairs = paired_secondaries(lf).collect()
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# event 1: 1 true, 1 pred -> paired (22, 22); event 2: 2 true, 1 pred -> paired rank0 only (22, 22)
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assert pairs["true_pdg"].to_list() == [22, 22]
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assert pairs["pred_pdg"].to_list() == [22, 22]
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def test_hist2d_basic():
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lf = pl.DataFrame({"x": [0.1, 0.5, 0.9, 0.5], "y": [0.1, 0.9, 0.9, 0.1]}).lazy()
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edges = np.linspace(0.0, 1.0, 3) # 2 bins: [0,0.5), [0.5,1]
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mat = hist2d(lf, pl.col("x"), pl.col("y"), edges, edges)
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assert mat.sum() == 4
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assert mat.shape == (2, 2)
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def _ctx_with_predictions(n_marginal_bins: int = 10) -> Context:
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return build_context(
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[RolloutSpec("rollout", _rollout_frame())],
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_reference_frame(),
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predictions=[PredictionSpec("pred", _global_prediction_frame())],
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n_energy_bins=2,
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n_marginal_bins=n_marginal_bins,
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top_k_pdg=3,
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sample_rows=1000,
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)
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def test_build_context_resolves_prediction_ranges():
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ctx = _ctx_with_predictions()
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assert "edep" in ctx.pred_var_ranges
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assert "edep" in ctx.pred_residual_ranges
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assert ctx.pred_top_sec_pdgs # secondaries present in the fixture
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def test_prediction_specs_compute_valid_reduced():
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ctx = _ctx_with_predictions()
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bundle = Bundle.open(
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[RolloutSpec("rollout", _rollout_frame())],
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_reference_frame(),
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ctx,
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predictions=[PredictionSpec("pred", _global_prediction_frame())],
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)
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for spec_id in (
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"pred_marginal_edep",
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"pred_scatter_edep",
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"pred_residual_edep",
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"pred_relative_residual_edep",
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"pred_residual_profile_edep",
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"pred_ks_summary",
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"pred_bias_summary",
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"pred_rmse_summary",
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"pred_n_sec_confusion",
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"pred_sec_species_confusion",
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"pred_dir_alignment_post",
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"pred_dir_alignment_travel",
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"pred_constraint_violations",
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"pred_correlation_delta",
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):
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spec = get_spec(spec_id)
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r = spec.finalize([spec.compute_partial(bundle)], ctx)
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assert r.id == spec_id
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assert r.kind != "unavailable", f"{spec_id} unexpectedly unavailable"
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assert "pred" in r.payload["series"]
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def test_prediction_specs_unavailable_without_predictions():
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ctx = _ctx_with_predictions()
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bundle = Bundle.open([RolloutSpec("rollout", _rollout_frame())], _reference_frame(), ctx)
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for spec_id in ("pred_marginal_edep", "pred_scatter_edep", "pred_n_sec_confusion", "pred_ks_summary"):
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spec = get_spec(spec_id)
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r = spec.finalize([spec.compute_partial(bundle)], ctx)
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assert r.kind == "unavailable"
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assert r.payload["note"]
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@pytest.mark.parametrize(
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"spec_id",
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["pred_marginal_edep", "pred_scatter_edep", "pred_n_sec_confusion", "pred_ks_summary", "pred_correlation_delta"],
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)
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def test_prediction_chunked_matches_unchunked(spec_id: str):
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ctx = _ctx_with_predictions()
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specs = [RolloutSpec("rollout", _rollout_frame())]
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preds = [PredictionSpec("pred", _global_prediction_frame())]
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spec = get_spec(spec_id)
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unchunked_bundle = Bundle.open(specs, _reference_frame(), ctx, predictions=preds)
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unchunked = spec.finalize([spec.compute_partial(unchunked_bundle)], ctx)
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n_chunks = 2
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parts = [
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spec.compute_partial(Bundle.open(specs, _reference_frame(), ctx, chunk=(k, n_chunks), predictions=preds))
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for k in range(n_chunks)
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]
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chunked = spec.finalize(parts, ctx)
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assert chunked.kind == unchunked.kind
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_assert_close(unchunked.payload, chunked.payload)
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def _assert_close(a, b) -> None:
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"""Recursively compare two JSON-shaped payloads (float-tolerant)."""
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if isinstance(a, dict):
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assert set(a) == set(b)
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for k in a:
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_assert_close(a[k], b[k])
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elif isinstance(a, list):
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assert len(a) == len(b)
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for x, y in zip(a, b):
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_assert_close(x, y)
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elif isinstance(a, float):
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assert np.isclose(a, b, atol=1e-9) or (np.isnan(a) and np.isnan(b))
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else:
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assert a == b
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def test_paired_scalars_are_subset_of_all_vars():
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assert set(PAIRED_SCALARS) <= {"step_length", "edep", "delta_e", "post_E"}
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