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giant/giant/analysis/render.py
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feat(analysis): per-step secondary multiplicity plots
Replace the event-level n_sec confusion matrix with two step-resolved
secondary-multiplicity comparisons:

- sec_count_per_step: overlay histogram of how many secondaries a single
  step emits, rollout series vs reference.
- sec_count_per_step_by_species: heatmap of per-step multiplicity of one
  species (zero row included) against species, drawn as one panel per
  rollout plus a reference panel, raw counts on a log color scale.

Both are backed by a new sources.secondaries_by_step view, which tags each
secondary with its emitting step — (event_id, parent_id, birth position)
on the rollout side, the row index on the reference side — so neither plot
needs a join against the step frame. Steps that emitted nothing are
recovered by subtraction from the chunk's step count, keeping both specs
sum-mergeable across condor chunks.

The rollout multiplicity is derived from the actual secondary birth rows
rather than the n_sec_pred column, which records the predicted count
before the per-event max-tracks cap.

_render_heatmap gained reference-panel and log-color support;
marginal_distance_summary sets neither key and is unchanged.

Co-Authored-By: Claude Opus 5 <noreply@anthropic.com>
2026-08-26 14:13:18 +02:00

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"""Render reduced artifacts to styled PDFs + gallery metadata (the local step).
This is the *only* module that imports ``plotstyle`` (ETPlot's KIT matplotlib
theme), which renders through a real LaTeX toolchain — so it runs on the
submit/login node, never on a compute worker. It reads nothing but the small
``Reduced`` JSON files a run produced, so it is fully decoupled from the heavy
streaming compute.
For each reduced artifact it writes ``<out>/<family>/<id>.pdf`` plus a sibling
``<id>.yaml`` (per-plot gallery metadata) and a per-family ``metadata.yaml``.
Optionally runs ``gallery generate`` to build the static HTML site.
Every rollout series gets a stable color via ``ps.get_color(i)``, ``i`` being
its position in ``payload["series"]`` — that position is fixed by the run's
YAML/``--label`` order (threaded unchanged from ``condor.RunMeta.rollouts``
through every ``PlotSpec``), so a given rollout keeps the same color across
every plot in a run. The reference, where a plot has one, always draws in one
fixed, distinct style (dark ink, dashed) instead of taking a slot in that
cycle.
"""
from __future__ import annotations
import dataclasses
import subprocess
from pathlib import Path
import numpy as np
import plotstyle as ps
from matplotlib.colors import LogNorm
import yaml
from giant.analysis.reduced import Reduced
_REFERENCE_LABEL = "reference (Geant4)"
_TEX_ESCAPE_MAP = {
"\\": r"\textbackslash{}",
"%": r"\%",
"&": r"\&",
"#": r"\#",
"$": r"\$",
"_": r"\_",
"{": r"\{",
"}": r"\}",
}
def _tex_escape(text: str) -> str:
"""Escape characters LaTeX treats specially in catalog-authored title/xlabel
text (e.g. a literal ``%`` in a "90% of deposited energy" title, which
``usetex`` otherwise reads as a comment marker and aborts the whole figure —
see gitea #81). A single pass over the *original* characters, so the
backslashes an escape itself introduces (e.g. ``\textbackslash{}``) are
never re-escaped."""
return "".join(_TEX_ESCAPE_MAP.get(c, c) for c in text)
def _ref_color() -> str:
return ps.colors.INK["primary"]
def _density(counts: list[int] | np.ndarray, edges: np.ndarray) -> np.ndarray:
counts = np.asarray(counts, dtype=np.float64)
total = counts.sum()
if total == 0:
return counts
return counts / (total * (edges[1] - edges[0]))
def _overlay(ax, edges: np.ndarray, payload: dict, log_y: bool) -> None:
if "reference" in payload:
ax.stairs(
_density(payload["reference"], edges), edges, label=_REFERENCE_LABEL, color=_ref_color(), linestyle="--"
)
for i, (name, counts) in enumerate(payload.get("series", {}).items()):
ax.stairs(_density(counts, edges), edges, label=name, color=ps.get_color(i))
if log_y:
ax.set_yscale("log")
def _router_summary(router_cfg: dict) -> str:
if not router_cfg.get("enabled"):
return "off"
return f"{router_cfg.get('type', '?')}×{router_cfg.get('n_experts', '?')}"
def _figure_params_v2(mc: dict, meta: dict) -> dict:
"""`_figure_params_single` for a new-shape (nested) `model_config` — has a
`stage1_model` key. Reports stage 1's architecture (the headline
generator); stage 2's generator is only added (`mode_s2`) when it
differs from stage 1's, since a mixed run (the `stage1=flow` +
`stage2=wgan` case) is the interesting exception, not
the common case."""
s1 = mc["stage1_model"]
s2 = mc.get("stage2_model") or {}
mode = s1.get("generator")
params: dict = {}
if s1.get("hidden_dim") is not None:
params["hidden_dim"] = s1["hidden_dim"]
if s1.get("n_res_blocks") is not None:
params["n_res_blocks"] = s1["n_res_blocks"]
if mode is not None:
params["mode"] = mode
s2_mode = s2.get("generator")
if s2_mode is not None and s2_mode != mode:
params["mode_s2"] = s2_mode
particle_type = ((mc.get("conditioning") or {}).get("particle") or {}).get("type")
if particle_type is not None:
params["conditioning"] = particle_type
params["router"] = _router_summary(s1.get("router") or {})
if meta.get("training_epoch") is not None:
params["epoch"] = meta["training_epoch"]
if meta.get("best_val_loss") is not None:
params["best_val_loss"] = round(meta["best_val_loss"], 4)
if mode == "wgan":
noise_dim = (s1.get("wgan") or {}).get("noise_dim")
if noise_dim is not None:
params["noise_dim"] = noise_dim
elif meta.get("steps") is not None:
params["steps"] = meta["steps"]
return params
def _figure_params_single(meta: dict) -> dict:
"""Curated run identity for the figure subtitle (``new_figure(params=...)``),
for exactly one rollout's ``plot_meta``.
``meta``/each plot's own ``<id>.yaml`` (see ``_plot_metadata``) already
carry every threaded model/training/rollout/dataset parameter for
after-the-fact lookup — this picks only the handful that matter for
telling figures apart at a glance while flipping through a gallery, since
the subtitle is one unwrapped line of text. The last slot is
architecture-conditional: flow/ddpm runs show the ODE ``steps`` used for
this rollout, wgan runs show ``noise_dim`` instead since wgan sampling is
single-pass and has no ODE step count.
Handles both a v0.2 checkpoint's flat ``model_config`` and a v0.3.0
nested one (has a ``stage1_model`` key — see ``_figure_params_v2``).
"""
mc = meta.get("model_config") or {}
if "stage1_model" in mc:
return _figure_params_v2(mc, meta)
mode = mc.get("mode")
params: dict = {}
if mc.get("hidden_dim") is not None:
params["hidden_dim"] = mc["hidden_dim"]
if mc.get("n_blocks") is not None:
params["n_blocks"] = mc["n_blocks"]
if mode is not None:
params["mode"] = mode
if mc.get("conditioning") is not None:
params["conditioning"] = mc["conditioning"]
params["router"] = _router_summary(mc.get("router") or {})
if meta.get("training_epoch") is not None:
params["epoch"] = meta["training_epoch"]
if meta.get("best_val_loss") is not None:
params["best_val_loss"] = round(meta["best_val_loss"], 4)
if mode == "wgan":
if mc.get("noise_dim") is not None:
params["noise_dim"] = mc["noise_dim"]
elif meta.get("steps") is not None:
params["steps"] = meta["steps"]
return params
def _figure_params(run_meta: dict) -> dict:
"""Curated run identity for the figure subtitle.
A single-rollout run reuses that rollout's ``plot_meta`` (same curated
model/training/rollout subset as always — see ``_figure_params_single``);
a multi-rollout run instead names the series being compared, since no
single ``model_config`` applies to the figure as a whole (each plot's own
gallery YAML still carries every rollout's full ``plot_meta`` for
after-the-fact lookup, via ``_plot_metadata``).
"""
rollouts = run_meta.get("rollouts") or {}
if len(rollouts) == 1:
((_, meta),) = rollouts.items()
return _figure_params_single(meta)
return {"rollouts": ", ".join(rollouts)} if rollouts else {}
def _render_overlay(r: Reduced, params: dict):
edges = np.asarray(r.payload["edges"])
fig, ax = ps.new_figure("thesis-single", title=r.title, params=params)
_overlay(ax, edges, r.payload, r.payload.get("log_y", False))
ax.set_xlabel(r.xlabel)
ax.set_ylabel("density")
ps.style_legend(ax, title="source")
return fig
def _render_single(r: Reduced, params: dict):
edges = np.asarray(r.payload["edges"])
fig, ax = ps.new_figure("thesis-single", title=r.title, params=params)
for i, (name, counts) in enumerate(r.payload.get("series", {}).items()):
ax.stairs(_density(counts, edges), edges, label=name, color=ps.get_color(i))
if r.payload.get("log_y"):
ax.set_yscale("log")
if r.payload.get("log_x"):
ax.set_xscale("log")
ax.set_xlabel(r.xlabel)
ax.set_ylabel("density")
ps.style_legend(ax, title="source")
return fig
def _render_grouped(r: Reduced, params: dict):
edges = np.asarray(r.payload["edges"])
groups = r.payload["groups"]
labels = list(groups)
n = len(labels)
ncols = min(3, n) or 1
nrows = (n + ncols - 1) // ncols
fig, axes = ps.new_figure(
"slide-16x9",
title=r.title,
params=params,
nrows=nrows,
ncols=ncols,
squeeze=False,
)
flat = axes.ravel()
for i, lbl in enumerate(labels):
ax = flat[i]
_overlay(ax, edges, groups[lbl], r.payload.get("log_y", False))
ax.set_title(lbl, fontsize=8)
ax.set_xlabel(r.xlabel)
for j in range(n, len(flat)):
flat[j].set_visible(False)
ps.style_legend(flat[0], title="source")
return fig
def _render_profile(r: Reduced, params: dict):
edges = np.asarray(r.payload["edges"])
centers = 0.5 * (edges[:-1] + edges[1:])
fig, ax = ps.new_figure("thesis-single", title=r.title, params=params)
if "reference" in r.payload:
ref = r.payload["reference"]
mean, std = np.asarray(ref["mean"]), np.asarray(ref["std"])
color = _ref_color()
ax.plot(centers, mean, label=_REFERENCE_LABEL, color=color, linestyle="--")
ax.fill_between(centers, mean - std, mean + std, alpha=0.2, color=color)
for i, (name, side) in enumerate(r.payload.get("series", {}).items()):
mean, std = np.asarray(side["mean"]), np.asarray(side["std"])
color = ps.get_color(i)
ax.plot(centers, mean, label=name, color=color)
ax.fill_between(centers, mean - std, mean + std, alpha=0.2, color=color)
ax.set_xlabel(r.xlabel)
ax.set_ylabel(r.payload.get("ylabel", "mean deposited energy [MeV]"))
ps.style_legend(ax, title="source")
return fig
def _render_bar(r: Reduced, params: dict):
labels = r.payload["labels"]
x = np.arange(len(labels))
series = r.payload.get("series", {})
has_ref = "reference" in r.payload
n_bars = len(series) + (1 if has_ref else 0)
width = 0.8 / max(n_bars, 1)
offsets = np.linspace(-0.4 + width / 2, 0.4 - width / 2, n_bars)
fig, ax = ps.new_figure("thesis-single", title=r.title, params=params)
idx = 0
if has_ref:
ax.bar(x + offsets[idx], r.payload["reference"], width, label=_REFERENCE_LABEL, color=_ref_color())
idx += 1
for i, (name, vals) in enumerate(series.items()):
ax.bar(x + offsets[idx], vals, width, label=name, color=ps.get_color(i))
idx += 1
ax.set_xticks(x)
ax.set_xticklabels(labels, rotation=45, ha="right")
ax.set_ylabel(r.payload.get("ylabel", "value"))
ps.style_legend(ax, title="source")
return fig
def _render_router_gating(r: Reduced, params: dict):
series = r.payload.get("series", {})
names = list(series)
log_x = r.payload.get("log_x", False)
fig, axes = ps.new_figure("slide-16x9", title=r.title, params=params, nrows=len(names), ncols=2, squeeze=False)
for row, name in enumerate(names):
entry = series[name]
n_experts = entry["n_experts"]
for col, key in enumerate(("rollout", "reference")):
ax = axes[row, col]
side = entry.get(key, {})
centers = np.asarray(side.get("centers", []))
means = np.asarray(side.get("means", []))
if len(centers) and means.size:
cum = np.zeros(len(centers))
for i in range(n_experts):
ax.fill_between(centers, cum, cum + means[:, i], alpha=0.7, label=f"expert {i}")
cum = cum + means[:, i]
if log_x:
ax.set_xscale("log")
ax.set_ylim(0, 1)
panel_label = _REFERENCE_LABEL if key == "reference" else "rollout"
ax.set_title(f"{name}{panel_label}", fontsize=8)
if row == len(names) - 1:
ax.set_xlabel(r.xlabel)
axes[row, 0].set_ylabel("mean gate weight")
if names:
ps.style_legend(axes[0, 0], title=f"{series[names[0]]['router_type']} router")
return fig
def _render_router_share(r: Reduced, params: dict):
series = r.payload.get("series", {})
names = list(series)
present: tuple[str, ...] = ("rollout", "reference")
if names:
present = tuple(k for k in ("rollout", "reference") if k in series[names[0]])
ncols = max(len(present), 1)
fig, axes = ps.new_figure("slide-16x9", title=r.title, params=params, nrows=len(names), ncols=ncols, squeeze=False)
for row, name in enumerate(names):
entry = series[name]
n_experts = entry["n_experts"]
cats = entry["categories"]
x = np.arange(len(cats))
for col, key in enumerate(present):
ax = axes[row, col]
side = entry.get(key)
if side is not None:
shares = np.array([side[c] for c in cats]) # (n_cat, n_experts)
bottom = np.zeros(len(cats))
for i in range(n_experts):
ax.bar(x, shares[:, i], bottom=bottom, label=f"expert {i}")
bottom += shares[:, i]
ax.set_xticks(x)
ax.set_xticklabels(cats, rotation=45, ha="right")
ax.set_ylim(0, 1)
panel_label = _REFERENCE_LABEL if key == "reference" else "rollout"
ax.set_title(f"{name}{panel_label}", fontsize=8)
axes[row, 0].set_ylabel("share of rows dispatched to expert")
if names:
ps.style_legend(axes[0, 0], title=f"{series[names[0]]['router_type']} router")
return fig
def _render_router_specialization(r: Reduced, params: dict):
fig, ax = ps.new_figure("thesis-single", title=r.title, params=params)
series = r.payload.get("series", {})
chance_levels: set[float] = set()
for i, (name, entry) in enumerate(series.items()):
color = ps.get_color(i)
if entry.get("chance_level") is not None:
chance_levels.add(entry["chance_level"])
for key, linestyle, label in (
("rollout", "-", name),
("reference", "--", f"{name} ({_REFERENCE_LABEL})"),
):
side = entry.get(key)
if side and side["centers"]:
ax.plot(
side["centers"],
side["score"],
label=label,
color=color,
linestyle=linestyle,
marker="o",
markersize=3,
)
for lvl in sorted(chance_levels):
ax.axhline(lvl, linestyle=":", color="gray")
if r.payload.get("log_x"):
ax.set_xscale("log")
ax.set_ylim(0, 1)
ax.set_xlabel(r.xlabel)
ax.set_ylabel("max gate weight")
ps.style_legend(ax, title="router")
return fig
def _render_heatmap(r: Reduced, params: dict):
series = dict(r.payload["series"])
row_labels = r.payload["row_labels"]
col_labels = r.payload["col_labels"]
# A heatmap-shaped plot is one matrix per rollout, so the reference (when the
# comparison has one — the distance scorecard doesn't) becomes one more panel
# rather than another line.
if r.payload.get("reference") is not None:
series["reference"] = r.payload["reference"]
names = list(series)
norm = LogNorm(vmin=1) if r.payload.get("log_color") else None
fig, axes = ps.new_figure(
"slide-16x9" if len(names) > 1 else "thesis-single",
title=r.title,
params=params,
nrows=1,
ncols=len(names),
squeeze=False,
)
flat = axes.ravel()
im = None
for ax, name in zip(flat, names):
mat = np.asarray(series[name], dtype=float)
im = ax.imshow(
mat,
origin="upper",
aspect="auto",
cmap=r.payload.get("cmap", "viridis"),
norm=norm,
vmin=None if norm else r.payload.get("vmin"),
vmax=None if norm else r.payload.get("vmax"),
)
ax.set_xticks(range(len(col_labels)))
ax.set_xticklabels(col_labels, rotation=45, ha="right")
ax.set_yticks(range(len(row_labels)))
ax.set_yticklabels(row_labels)
ax.set_xlabel(r.xlabel)
if len(names) > 1:
ax.set_title(name, fontsize=8)
flat[0].set_ylabel(r.payload.get("ylabel", ""))
fig.colorbar(im, ax=list(flat), label=r.payload.get("cbar_label", "value"))
return fig
def _render_unavailable(r: Reduced, params: dict):
fig, ax = ps.new_figure("thesis-single", title=r.title, params=params)
ax.axis("off")
ax.text(
0.5,
0.5,
r.payload.get("note", "not available"),
ha="center",
va="center",
wrap=True,
fontsize=10,
transform=ax.transAxes,
)
return fig
_RENDERERS = {
"overlay_hist": _render_overlay,
"single_hist": _render_single,
"grouped_hist": _render_grouped,
"profile": _render_profile,
"bar": _render_bar,
"router_gating": _render_router_gating,
"router_share": _render_router_share,
"router_specialization": _render_router_specialization,
"heatmap": _render_heatmap,
"unavailable": _render_unavailable,
}
def render(r: Reduced, run_meta: dict | None = None):
"""Build the matplotlib figure for one reduced artifact (dispatch on kind).
``title``/``xlabel`` are LaTeX-escaped here, at the one point every kind's
renderer draws them from — ``_plot_metadata`` deliberately keeps using the
unescaped ``r`` for the gallery YAML, which isn't LaTeX.
"""
escaped = dataclasses.replace(r, title=_tex_escape(r.title), xlabel=_tex_escape(r.xlabel))
return _RENDERERS[r.kind](escaped, _figure_params(run_meta or {}))
def _plot_metadata(r: Reduced, run_meta: dict) -> dict:
meta = {
"title": r.title,
"description": f"Rollout vs reference: {r.title}.",
"plot_type": r.kind,
"family": r.family,
}
meta.update(r.meta)
if "note" in r.payload:
meta["note"] = r.payload["note"]
if run_meta:
# Every threaded model/training/rollout/dataset parameter, so a
# single plot's metadata is self-contained for later comparison
# without cross-referencing the run's root metadata.yaml.
meta["parameters"] = {k: v for k, v in run_meta.items() if k != "title"}
return meta
def render_all(
reduced_dir: str | Path,
out_dir: str | Path,
run_meta: dict | None = None,
*,
run_gallery: bool = False,
) -> list[Path]:
"""Render every reduced artifact under ``reduced_dir`` to a PDF tree.
Writes ``<out>/<family>/<id>.pdf`` + ``<id>.yaml`` and a per-family
``metadata.yaml`` (carrying the run's checkpoint/paths as gallery params).
Returns the list of PDF paths written.
"""
ps.use()
run_meta = run_meta or {}
reduced_dir, out_dir = Path(reduced_dir), Path(out_dir)
pdfs: list[Path] = []
families: set[str] = set()
for jf in sorted(reduced_dir.glob("*.json")):
r = Reduced.load(jf)
family_dir = out_dir / r.family
family_dir.mkdir(parents=True, exist_ok=True)
families.add(r.family)
fig = render(r, run_meta)
ps.savefig(fig, str(family_dir / r.id), formats=("pdf",))
(family_dir / f"{r.id}.yaml").write_text(yaml.safe_dump(_plot_metadata(r, run_meta), sort_keys=False))
pdfs.append(family_dir / f"{r.id}.pdf")
import matplotlib.pyplot as plt
plt.close(fig)
# Root + per-family gallery metadata.
out_dir.mkdir(parents=True, exist_ok=True)
(out_dir / "metadata.yaml").write_text(
yaml.safe_dump(
{
"title": run_meta.get("title", "GIANT rollout analysis"),
"description": "Autoregressive rollout(s) compared against a held-out Geant4 reference steps file.",
"experiment": "GIANT",
"parameters": {k: v for k, v in run_meta.items() if k != "title"},
},
sort_keys=False,
)
)
for fam in families:
(out_dir / fam / "metadata.yaml").write_text(
yaml.safe_dump({"title": fam, "description": f"{fam} plots."}, sort_keys=False)
)
if run_gallery:
subprocess.run(["gallery", "generate", "--source", str(out_dir)], check=True)
return pdfs
def render_run(run_dir: str | Path, *, run_gallery: bool = False) -> list[Path]:
"""Render a prepped run directory: ``<run_dir>/reduced`` → ``<run_dir>/plots``.
First joins every plot's chunk partials (``reduced_partial/<id>__*.json``)
into ``reduced/<id>.json`` via ``merge_all`` — a no-op merge when the run
wasn't chunked (``n_chunks=1``) — then pulls the rollout provenance
(checkpoint, paths, cutoffs) from ``run_meta.json`` into every plot's
gallery metadata and renders.
"""
from giant.analysis.condor import RunMeta, merge_all
run_dir = Path(run_dir)
merge_all(run_dir)
meta = RunMeta.load(run_dir / "run_meta.json")
run_meta = {
"title": meta.title,
"reference": meta.reference,
"rollouts": {ro["name"]: ro["plot_meta"] for ro in meta.rollouts},
}
return render_all(run_dir / "reduced", run_dir / "plots", run_meta, run_gallery=run_gallery)