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geant4/source/processes/electromagnetic/dna/History
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2016-06-09 17:01:34 +02:00

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=========================================================
Geant4 - an Object-Oriented Toolkit for Simulation in HEP
=========================================================
Category History file
---------------------
This file should be used by G4 developers and category coordinators
to briefly summarize all major modifications introduced in the code
and keep track of all category-tags.
It DOES NOT substitute the CVS log-message one should put at every
committal in the CVS repository !
----------------------------------------------------------
* Reverse chronological order (last date on top), please *
----------------------------------------------------------*
12-11-2012 M.K tag emdna-V09-05-35
Remove unnecessary abort() and exit(-1) previously introduced to avoid
coverity warnings (rev 64993)
06-11-2012 G.Cosmo tag emdna-V09-05-34
Minor fixes for porting on AIX; mainly on use of const signature
for objects in maps...
04-11-2012 M.K. tag emdna-V09-05-33
G4IT : transform G4ITTrackingInformation pointer to object (rev 64715)
G4ITTrackingManager : get rid of attribute "fVerboseLevel" (rev 64716)
G4ITStepProcessor.cc : correct coverity warnings in copy constructor (not used) (rev 64717)
G4ITTransportationManager.hh : put default constructor as private (rev 64718)
G4VITModel.cc : rename variables in copy constructor and assignment operator (------)
G4MolecularDecayChannel.cc : adapt copy constructor to avoid coverity warnings (rev 64719)
G4MoleculeCounter.cc : get rid of duplicated layout (------)
G4DNAMolecularStepByStepModel : add an exception in the assignment operator (rev 64720)
G4ITTrackingManager.hh : remove remainders of fVerboseLevel (rev 64722)
Ionisation Models (Born, Rudd, RuddExtended) :
set fAtomDeexcitation = 0 (rev 64723)
add "else" before "if" statements and
add variables to avoid many checks on particleDefinition. (rev 64724)
dna.files : update files (rev 64725)
03-11-2012 S.I. tag emdna-V09-05-32
Switched to usage of SetEmModel and EmModel in all dna/processes
classes
24-10-2012 M.K tag emdna-V09-05-31
G4ITNavigator is updated to new interface of ReplicaNavigation::ComputeStep
(previously commented)
23-10-2012 M.K tag emdna-V09-05-30
Add exception in G4DNASecondOrderReaction
Add carriage return in G4DNASmoluchowskiReaction cc and hh
18-10-2012 M.K tag emdna-V09-05-29
Previous tag did not include history changes
18-10-2012 M.K tag emdna-V09-05-28
Remove warning
17-10-2012 M.K tag emdna-V09-05-27
Correct a typo from previous tag
17-10-2012 M.K tag emdna-V09-05-26
Correct information in headers
Rename G4DNADiffustionControlledModel to G4DNASmoluchowskiReactionModel
G4ITNavigator updated to new interface of ReplicaNavigation::ComputeStep.
01-10-2012 SI, P.Pater tag emdna-V09-05-25
Force kinetic energy to zero for real killings in models.
12-07-2012 G.Cosmo tag emdna-V09-05-24
Explicitly use inclusion of headers for system of units and physical
constants, in plan to remove implicit inclusion from globals.hh.
11.07.2012 M.K tag emdna-V09-05-23
Correct warnings introduce in previous tag
11.07.2012 M.K tag emdna-V09-05-22
Tag to be proposed
25.06.2012 M.K tag emdna-V09-05-21
Fix semantic warning related to forward declaration of G4ITNavigator_Lock
Modify molecule's name
21.06.2012 S.I tag emdna-V09-05-20
Update of electron elastic scattering low limit
09.06.2012 M.K tag emdna-V09-05-19
Fixed shadowing
04.06.2012 M.K tag emdna-V09-05-18
Add G4ITTrackingInteractivity + correct coverity warnings
24.05.2012 M.K tag emdna-V09-05-17
Remove unnecessary call of pow in G4DNASecondOrderReaction
23.05.2012 M.K tag emdna-V09-05-16
Add initialisation of G4ITTrackHolder in copy constructor of
G4ITStepManager
Prevent call of destructor of G4ITStepManager and
G4DNAChemistryManager
23.05.2012 M.K tag emdna-V09-05-15
Display warning (only once) from G4DNAMolecularMaterial
when one of its methods is called using a material that is
not defined as a molecule
21.05.2012 M.K tag emdna-V09-05-14
Modify G4DNAMolecularMaterial
Modify G4DNADamages
Add G4DNASecondOrderReaction prototype
Modify all models to use G4DNAMolecularMaterial
14.05.2012 M.K tag emdna-V09-05-13
Add G4DNAMolecularMaterial
Add G4DNADamages
10.05.2012 M.K tag emdna-V09-05-12
Add the possibility of calling G4ITStepManager::EndTracking()
from UserReactionAction::EndProcessing()
08.05.2012 M.K tag emdna-V09-05-11
Use inverseErf from CLHEP
03.05.2012 M.K tag emdna-V09-05-10
Add erfc function for windows compilator (VC++)
03.05.2012 M.K tag emdna-V09-05-09
Add an exception in molecular decay, in case no decay channel was proposed in input
03.05.2012 M.K tag emdna-V09-05-08
Add products of dissociative attachments (as a molecular decay)
Add new methods in G4ChemistryManager :
- PushMolecule
- PushMoleculeAtParentTimeAndPlace
Reset() at the end of G4ITStepManager::Process()
30.03.2012 M.K tag emdna-V09-05-07
Same as emdna-V09-05-06
30.03.2012 M.K tag emdna-V09-05-06
1) Add separate navigator for synchronous tracking
New classes :
* G4ITTransportationManager
* G4ITNavigator (just a small change from G4Navigator)
2) A messenger for G4ITStepManager :
* G4ITSteppingMessenger
3) Solve bugs with normal and brownian ITTransportation
14.03.2012 M.K tag emdna-V09-05-05
* int G4VITProcess::fProcessID
int G4VITProcess::fNbProcess
-> become size_t + related changes
* when a poststep process proposes an IL < 0
=> considered as a time, and transportation::computestep
is used
14.03.2012 M.K tag emdna-V09-05-04
Fix compilation warning
14.03.2012 M.K tag emdna-V09-05-03
Improve the management of information in G4ITStepProcessor
Fix coverity warnings
18.01.2012 S.I. tag emdna-V09-05-02
Removal of G4Water* classes in utils
11.01.2012 M.K tag emdna-V09-05-01
Bug fix in G4DNAChemistryManager::CreateSolvatedElectron
concerning the final position of the solvated electron
using Sanche thermalization
16.12.2011 S.I tag emdna-V09-05-00
Updated source of cross section file for elastic scattering
25.11.2011 M.K tag emdna-V09-04-52
Correct a typo in previous tag
25.11.2011 M.K tag emdna-V09-04-51
Place the reaction products at the reaction site
rather than center of mass in DNAMolecularReaction
21.11.2011 M.K tag emdna-V09-04-50
Change the name of macros in AddClone_def.hh to
avoid conflicts with ROOT.
Add short class description (comments added in the new files)
in JavaDoc style for doxygen use.
21.11.2011 M.K tag emdna-V09-04-49
Correct a wrong condition in the step manager
Avoid the call of Green brownian bridge when
the time step is equal to zero (bug)
Give priority to G4Processes over reaction processes
when the time steps returned by the time stepper
and the processes are equal
Improve verbose
21.11.2011 M.K tag emdna-V09-04-48
Fix incoherent management of time and secondaries in management/
Avoid memory leak related to the management of ITs
Correct verbose in new models & process
18.11.2011 M.K tag emdna-V09-04-47
Fix uninitialized boolean variable (fWriteFile)
in G4DNAChemistryManager
18.11.2011 M.K tag emdna-V09-04-46
Fix compilation error in G4TrackList on macOs
Clean G4DNAMolecularDecayDisplacer from comments
Correct a typo in G4DNAChemistryManager (H20 -> H2O)
15.11.2011 G.Cosmo tag emdna-V09-04-45
Fixes to initialisation of static data in G4VMolecularDecayDisplacer
and G4DNAMolecularDecayDisplacer, to allow generation of DLLs on
Windows.
Fixed compilation warning on icc compiler in
G4MolecularDecayTable.cc
10.11.2011 M.K. tag emdna-V09-04-44
Fix a bug in G4DNATransformElectronModel
10.11.2011 M.K. tag emdna-V09-04-43
Clean classes for release
Add comment into source
Change name of some methods
Transform two independent singleton pointers to auto_ptr
in order to prevent the user from deleting those classes
(ITStepMan + DNAChemMan)
10.11.2011 M.K. tag emdna-V09-04-42
For safety (at the time of static members destruction)
change fgManager in MolConf into a pointer delete by
the chemistryManager.
09.11.2011 M.K. tag emdna-V09-04-41
Add friend class G4TrackList_Boundary;
in G4TrackListNode.
Simplify and improve the use of dnaChemMan
Add more convenient methods in userReactionAction
08.11.2011 M.K. tag emdna-V09-04-40
Fix coverity warnings
07.11.2011 M.K. tag emdna-V09-04-39
Add correct types/sub-types for DNAElectronSolvatation
DNAMolecularDecay, DNABrownianTransportation, ITTransp
Add the possibility to link a decay time to a given
electronic configuration while declaring the decay
scheme through : G4MoleculeDef::AddeConfToExcitedState
Clean classes for release
03.11.2011 M.K. tag emdna-V09-04-38
Add dna libs in sources.cmake
03.11.2011 M.K. tag emdna-V09-04-37
Add G4ITStepManager fVerbose
Add dna includes in sources.cmake
01.11.2011 M.K. tag emdna-V09-04-36
Remove warnings on G4ITModelProcessor,
G4ITTransportation, G4TrackList on Windows
01.11.2011 G.Cosmo
Renamed export flags for DLL builds to G4EM_ALLOC_EXPORT and
updated GNUMakefiles to have it properly defined.
31.10.2011 M.K tag emdna-V09-04-35
Remove obsolete G4Exception
Remove "friend class G4KDTree" in G4KDNode
Remove G4VITProcessor and all relatives
Fix windows compilation errors & warnings
28.10.2011 M.K tag emdna-V09-04-34
Remove __PRETTY_FUNCTION__ introduce __Exception_Origin__
Plus remove obsolete G4Exception
28.10.2011 M.K tag emdna-V09-04-33
Displace G4DNAChemistryManager, G4DNAMolecularReactionTable,
G4VDNAReactionModel to utils
Displace G4DNAMoleculeEncouterStepper, G4DNAMoleculeReaction
to models
27.10.2011 M.K tag emdna-V09-04-32
Fix BornIonisation + the two RuddIoni
coverity errors.
26.10.2011 M.K tag emdna-V09-04-31
change std::shared_ptr to CLHEP::shared_ptr
26.10.2011 M.K. tag emdna-V09-04-30
Memory leak fixes
G4MolecularConfiguration::fManager added
26.10.2011 M.K. tag emdna-V09-04-29
G4DNAIonisation : add models for C/N/O/Fe
Add electron solvatation process & models
Add chemical processes
21.10.2011 M.K. tag emdna-V09-04-28
Same as emdna-V09-04-27 including models/ & processes/ from
emdna-V09-04-24
21.10.2011 M.K. tag emdna-V09-04-27
CMake fixes from emdna-V09-04-24
21.10.2011 M.K. tag emdna-V09-04-26
Bug fixes and new dev from the previous tag
21.10.2011 S. Incerti tag emdna-V09-04-25
Extension of ionisation by HZE proposed by Z. Francis
20.10.2011 M.K. tag emdna-V09-04-24
Bug fixes and new dev from the previous tag
07.10.2011 M.K. tag emdna-V09-04-23
First tag with "molecules" files
07.10.2011 M.K. tag emdna-V09-04-22
Add molecules+management directory
First tag with "management" files
09.09.2011 G.Folger tag emdna-V09-04-21
utils/sources.cmake: remove reference to non-existant
G4DNAMoleculeManager.cc
05.09.2011 A. M. M. K., S. I., tag emdna-V09-04-20
Updated sources.make and CMakeLists.txt
30.08.2011 A. M. M. K., S. I., tag emdna-V09-04-19
Reorganized whole architecture.
24.08.2011 A. Mantero, tag emdna-V09-04-18
Fixed a bug regarding energy deposition (bindingEnergy=0
if no deexcitation)
22.08.2011 S. Incerti, tag emdna-V09-04-17
Changed code (em0006) numbering for G4Exception
19.08.2011 S. Incerti, tag emdna-V09-04-16
Switched to new G4Exception syntax
04.08.2011 A. Mantero, tag emdna-V09-04-15
Added enhanced debug information in ionisation models
02.08.2011 S. Incerti, tag emdna-V09-04-14
Removed wrong pointer delete in G4DNARuddIonisation*
28.07.2011 S. Incerti, tag emdna-V09-04-13
Removed obsolete information.
28.07.2011 S. Incerti, tag emdna-V09-04-12
Updated deexcitation initialization in ionization models.
21.07.2011 A. Mantero, tag emdna-V09-04-11
Coverity warnings removal
11.07.2011 S.Incerti, tag emdna-V09-04-10
- Increased energy limits for
G4DNAChargeIncrease
G4DNAChargeDecrease
G4DNADingfelderChargeIncreaseModel
G4DNADingflederChargeDecreaseModel
in collaboration with Ziad F.
- This tag includes Alfonso's upgrade
of ionisation classes for Auger e-
16.05.2011 A.Mantero, tag emdna-V09-04-09
Further compilation warnings removal
16.05.2011 A.Mantero, tag emdna-V09-04-08
Compilation warnings removal
12.05.2011 A.Mantero, tag emdna-V09-04-07
added Atomic Deexcitation to Ionisation Models
04.05.2011 S. Incerti, tag emdna-V09-04-06
Fixed compilation error on icc in
G4DNADingfelderChargeIncreaseModel.cc.
03.05.2011 S. Incerti, tag emdna-V09-04-05
Changed process sub-type numbering.
30.04.2011 S. Incerti, tag emdna-V09-04-04
Fixed coverity warnings.
05.04.2011 S. Incerti, tag emdna-V09-04-03
Updated all models for handling of variable density.
17.03.2011 S. Incerti, tag emdna-V09-04-02
Addition of dependencies to configuration files.
17.03.2011 S. Incerti, tag emdna-V09-04-01
Addition of all files.
13.02.2011 S. Incerti, tag emdna-V09-04-00
Creation of dna sub-package in electromagnetic category.