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geant4/examples/extended/electromagnetic/TestEm7
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$Id: README,v 1.7 2004/06/23 11:29:50 maire Exp $
-------------------------------------------------------------------

     =========================================================
     Geant4 - an Object-Oriented Toolkit for Simulation in HEP
     =========================================================

                            TestEm7 
                            -------
     This example is devoted to the energy deposited by particles which
     are absorbed in a given material (Bragg peak).
     
     Also it computes the dose deposited in small 'test volumes' called tallies.
     
     In addition, it illustrates how to use the concept of 'process' in order 
     to implement a constraint on the step size of the particle trajectories.
	
 1- GEOMETRY DEFINITION
 
     The geometry consists of a single block of a homogenous material,
     placed in a world.
     	
     Three parameters define the geometry :
 	- the material of the box,
	- the thickness of the box (sizeX),
	- the  tranverse dimension of the box (sizeYZ).
	
     The default is 20 cm of water.
     	 	
     In addition a transverse uniform magnetic field can be applied.
 	
     The default geometry is constructed in DetectorConstruction class,
     but all of the above parameters can be changed interactively via
     the commands defined in the DetectorMessenger class.
     
     The size, matter, positions of several test-volumes (tallies) can be
     defined via UI commands : /testem/det/tally...    
 	
 2- PHYSICS LIST
 
    Physics Lists are subdivided on 4 following modules:
    1. "particles" - particle definitions  
    2. "general" - decays and transportation  
    3. "standard" (alternative) - standard EM physics
    4. "model"    (alternative) - standard EM physics using model approach
    
    Notice that there is an example of definition of a static ion : IonC12
    (see PhysListParticle.cc) and an example of use : ionC12.mac
 		
 	 
 3- AN EVENT : THE PRIMARY GENERATOR
 
     The primary kinematic consists of a single particle which hits the
     block perpendicular to the input face. The type of the particle
     and its energy are set in the PrimaryGeneratorAction class, and can
     changed via the G4 build-in commands of ParticleGun class (see
     the macros provided with this example).
     The default is proton 160 MeV
     	
     In addition one can define randomly the impact point of the incident
     particle. The corresponding interactive command is built in
     PrimaryGeneratorMessenger class.
	 	
     A RUN is a set of events.
 	
 				
 4- VISUALIZATION
 
     The Visualization Manager is set in the main().
     The initialisation of the drawing is done via the command
     > /control/execute vis.mac
 	
     The detector has a default view which is a longitudinal view of the box.
 	
     The tracks are drawn at the end of event, and erased at the end of run.
     Optionaly one can choose to draw all particles, only the charged one,
     or none. This command is defined in EventActionMessenger class.
     
		  	
 5- HOW TO START ?
 
     - compile and link to generate an executable
	% cd geant4/examples/extended/electromagnetic/TestEm7 
 	% gmake
 		
     - execute Test  in 'batch' mode from macro files
 	% TestEm7    run01.mac
 		
     - execute Test  in 'interactive mode' with visualization
 	% TestEm7 
 		....
 	Idle> type your commands
 		....
 	Idle> exit


 6- HISTOGRAM OF THE BRAGG PEAK
 
     Testem7 computes the total energy deposited along the trajectory of 
     the incident particle : the so-called Bragg peak.
     
     In order to control the accuracy of the deposition, the user can limit
     the maximum allowed for the step size of charged particles.
     (command /testem/stepMax )
 
     The result is a 1D histogram  which is the total energy deposited along 
     the trajectory of the incident particle.
     
     The histogram is saved in paw (testem7.paw) 
     
     The bin size is egal to stepMax. The number of bins is determined by 
     the thickness of the absorber (with a minimum of 100 bins).
     The total energy deposited is plotted in MeV/mm.  

     Note that, by default, histograms are disabled. To activate them, uncomment
     G4ANALYSIS_USE in GNUmakefile.
     
  7- DOSE IN 'TEST-VOLUMES'
  
     The energy deposited in the test-volumes (tallies) defined in
     DetectorConstruction are printed at EndOfRun, both in MeV and gray.
     
     Notice that the doses are not re initialized between runs, i.e. they are
     cumulative over the runs. (idem for the histogram of the Bragg peak.)   


 8- Using histograms
 ------------------- 

By default the histograms are not activated. To activate histograms
the environment variable G4ANALYSIS_USE should be defined. For instance
uncomment the flag G4ANALYSIS_USE in GNUmakefile.

To use histograms any of implementations of AIDA interfaces should
be available (see http://aida.freehep.org).

A package including AIDA and extended interfaces also using Python
is PI, available from: http://cern.ch/pi .

Once installed PI or PI-Lite in a specified local area $MYPY, it is
required to add the installation path to $PATH, i.e. for example,
for release 1.2.1 of PI:

setenv PATH ${PATH}:$MYPI/1.2.1/app/releases/PI/PI_1_2_1/rh73_gcc32/bin

CERN users can use the PATH to the LCG area on AFS.

Before compilation of the example it is optimal to clean up old 
files:

gmake histclean
gmake

Before running the example the command should be issued:

eval `aida-config --runtime csh`

It is possible to choose the format of the output file with 
histograms using UI command:

/testem/histo/setFileType type

The following types are available: hbook, root, xml.