lars/geant4
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
Files
df176550b3e44cdd70406ff2b581896426b5bcbe
geant4/examples/extended/parameterisations/Par04/README
T
Gabriele Cosmo 860a2b92bf Import Geant4 11.2.0 source tree
2023-12-08 10:43:34 +01:00

268 lines
11 KiB
Plaintext
Raw Blame History

-------------------------------------------------------------------
=========================================================
Geant4 - an Object-Oriented Toolkit for Simulation in HEP
=========================================================
Example Par04
-------------
This example demonstrates how to use the Machine Learning (ML) inference
to create energy deposits as a fast simulation model using ONNX Runtime [1],
LWTNN [2], and LibTorch [3] libraries.
The model used in this example was trained externally (in Python) on data
from this examples' full simulation and can be applied to perform fast simulation.
The python scripts are available in the training folder.
The geometry used in the example is a cylindrical setup of layers: tungsten
absorber and silicon as the active material. 3D readout geometry (cylindrical)
is defined dynamically, based on the particle direction at the entrance to the
calorimeter. This is set using a fast simulation model that is triggered at
detector entrance. Analysis of energy deposits is done in the event action,
ntuple with hits is stored.
[1]: https://github.com/microsoft/onnxruntime
[2]: https://github.com/lwtnn/lwtnn
[3]: https://pytorch.org/cppdocs/frontend.html
1. Detector description
-----------------------
The detector consists of cylindrical layers of passive and active material,
tungsten and silicon, respectively.
Fast simulation is attached to the region of the detector.
Input macro can specify which layer is considered an active layer (sensitive
detector is attached to it). For fast simulation both layers should be marked
as sensitive. It is connected to the way the deposits are created: position is
centre of the layer, which may often fall within the absorber (which is thicker
than the active material). In a realistic detector setup, the positions used in
fast simulation would be calculated properly, to deposit energy within the active
material.
2. Sensitive detectors
-----------------------
2.1. Par04SensitiveDetector
---------------------------
This SD scores energy originating from showers, in a cylinder around the particle
direction and position in the calorimeter.
Sensitive detector inherits from both base classes:
- G4VSensitiveDetector: for processing of detailed/non-fast simulation hits
- G4VFastSimSensitiveDetector: for processing of fast sim (G4FastSim) hits.
Hits are placed in the same hit collection, with a different flag to distinguish
between those originated in the full simulation, and those from the fast
simulation.
During visualisation, hits are represented as volumes of different colour:
green for full simulation and red for fast simulation.
2.2. Par04ParallelFullSensitiveDetector
---------------------------------------
This SD represents a physical readout structure to the detector (a regular grid).
UI settings are available to set number of slices (azimuthal segmentation) and number
of rows (segmentation along beam axis). Number of layers cannot be changed as it
corresponds to the number of layers placed at the detector construction time. Only
deposits in the active (sensitive) layers are scored in this SD.
2.2. Par04ParallelFastSensitiveDetector
---------------------------------------
This SD represents a physical readout that takes into account deposits originating
from fast simulation, so cells span over active and passive layers. This allows to
account all energy from the parameterisation.
3. Primary generation
---------------------
Particle gun is used as a primary generator. 10 GeV electron is used by default.
By default particles are generated along y axis. Those values
can be changed using /gun/ UI commands.
4. Physics List
---------------
FTFP_BERT modular physics list is used. On top of it, fast simulation physics
is registered for selected particles (electrons, positrons).
5. User actions
----------------------------------------------------------
- Par04RunAction : run action used for initialization and termination
of the run. Histograms for analysis of shower development
in the detector are created.
- Par04EventAction : event action used for initialization and termination
of the event. Analysis of shower development is performed
on event-by-event basis.
6. ML Inference
----------------------------------------------------------
- Par04MLFastSimModel : model used for parametrisation of electrons, positrons,
and gammas. Energy is deposited and
distributed according to inferred values from the ML model.
This class triggers the inference setup, asks for values,
and deposits energies at given positions.
- Par04InferenceSetup : this class is used to initialize the inference parameters
(user application specific) such as the inference library,
the path and name of the inference model and the size of
the input inference vector(latent dimension and and condition size).
This class constructs this vector and triggers the interface
corresponding to the specified input inference library.
After the inference, the post processing step consists of
scaling back inferred values to the original range.
- Par04InferenceInterface : is a base class that allows to read in the ML model, configure
and execute inference.
- Par04OnnxInference and Par04LWTNNInference and Par04TorchInference : inference library specific
classes that inherit from the base class Par04InferenceInterface.
7. Output
---------
The execution of the program (examplePar04) produces an output with histograms.
Ntuples are also stored. They are not merged if the application is run on multiple threads.
The macro file examplePar04.mac is used to run full simulation. It will simulate 100
events, for single 10 GeV electron beams.
If CMake is able to find inference libraries (LWTNN and/or ONNX Runtime and/or LibTorch), a configuration
macro will be available for that library (examplePar04_lwtnn.mac and/or examplePar04_onnx.mac
and/or examplePar04_torch.mac). It will use a trained model to run inference and create showers
in the detector by directly depositing energy.
8. How to build and run the example
-----------------------------------
- LWTNN, ONNX Runtime, and LibTorch are available on LCG. In order to use them, you can set a CMAKE_PREFIX_PATH:
% source /cvmfs/sft.cern.ch/lcg/contrib/gcc/11.3.0/x86_64-centos7/setup.sh
% cmake -DCMAKE_PREFIX_PATH="/cvmfs/sft.cern.ch/lcg/releases/LCG_102b/lwtnn/2.11.1/x86_64-centos7-gcc11-opt/;/cvmfs/sft.cern.ch/lcg/releases/LCG_102b/onnxruntime/1.11.1/x86_64-centos7-gcc11-opt/;/cvmfs/sft.cern.ch/lcg/releases/LCG_102b/torch/1.11.0/x86_64-centos7-gcc11-opt/lib/python3.9/site-packages/torch/" <Par04_SOURCE>
- Compile and link to generate the executable (in your CMake build directory):
% cmake <Par04_SOURCE>
% make
- Execute the application (in batch mode):
% ./examplePar04 -m examplePar04.mac
which produces two root file for full simulation.
- Execute the application (in interactive mode):
% ./examplePar04 -i -m vis.mac
which allows to visualize hits (from full simulation).
- If ONNX Runtime is available:
% ./examplePar04 -m examplePar04_onnx.mac
For interactive mode with visualization:
% ./examplePar04 -i -m vis_onnx.mac
- If LWTNN is available:
% ./examplePar04 -m examplePar04_lwtnn.mac
For interactive mode with visualization:
% ./examplePar04 -i -m vis_lwtnn.mac
- If LibTorch is available:
% ./examplePar04 -m examplePar04_torch.mac
For interactive mode with visualization:
% ./examplePar04 -i -m vis_torch.mac
- Additional options available:
% ./examplePar04 -m examplePar04.mac -r 0
For serial run manager mode
% ./examplePar04 -m examplePar04.mac -r 1 -t 8
For multi-threaded run manager mode with 8 threads
% ./examplePar04 -m examplePar04.mac -r 2
For tasking run manager mode with number of tasks that can be change via env variable G4FORCE_EVENTS_PER_TASK
By default, CMake will attempt to build fast simulation with ONNX Runtime and LWTNN. However, if none
of those libraries is found, it will proceed with full simulation only. The search can be switched
off manually switching CMake flag INFERENCE_LIB to OFF (-DINFERENCE_LIB=OFF)
9. Macros
---------
common_settings.mac - A macro with common settings, executed by all other macros (e.g. detector settings).
vis.mac - Allows to run visualization. Pass it to the example in interactive mode ("-i" passed to the executable).
It can be used to visualize full simulation.
vis_onnx.mac - Allows to run visualization with ONNX Runtime inference. Pass it to the example in interactive mode
("-i" passed to the executable). It contains necessary settings of the inference.
vis_lwtnn.mac - Allows to run visualization with LWTNN inference. Pass it to the example in interactive mode
("-i" passed to the executable). It contains necessary settings of the inference.
vis_torch.mac - Allows to run visualization with LibTorch inference. Pass it to the example in interactive mode
("-i" passed to the executable). It contains necessary settings of the inference.
examplePar04.mac - Runs full simulation. It will run 100 events with single electrons, 10 GeV and
along y axis.
examplePar04_onnx.mac - Available only if ONNX Runtime is found by CMake. Runs fast simulation with
a NN stored in onnx file.
examplePar04_lwtnn.mac - Available only if LWTNN is found by CMake. Runs fast simulation with
a NN stored in json file.
examplePar04_torch.mac - Available only if LibTorch is found by CMake. Runs fast simulation with
a NN stored in pt file.
10. UI commands
--------------
UI commands useful in this example:
- activation/disactivation of the fast simulation model:
/param/ActivateModel inferenceModel
/param/InActivateModel inferenceModel
- particle gun commands
/gun/particle e-
/gun/energy 10 GeV
/gun/direction 0 1 0
/gun/position 0 0 0
UI commands defined in this example:
- detector settings
/Par04/detector/setDetectorInnerRadius 80 cm
/Par04/detector/setDetectorLength 2 m
/Par04/detector/setNbOfLayers 90
/Par04/detector/setAbsorber 0 G4_W 1.4 mm false
/Par04/detector/setAbsorber 1 G4_Si 0.3 mm true
- readout mesh
/Par04/mesh/setSizeOfRhoCells 2.325 mm
/Par04/mesh/setSizeOfZCells 3.4 mm
/Par04/mesh/setNbOfRhoCells 18
/Par04/mesh/setNbOfPhiCells 50
/Par04/mesh/setNbOfZCells 45
- inference setup
/Par04/inference/setSizeLatentVector 10
/Par04/inference/setSizeConditionVector 4
/Par04/inference/setModelPathName MLModels/Generator.onnx
/Par04/inference/setProfileFlag 0
/Par04/inference/setOptimizationFlag 0
/Par04/inference/setInferenceLibrary ONNX
/Par04/inference/setSizeOfRhoCells 2.325 mm
/Par04/inference/setSizeOfZCells 3.4 mm
/Par04/inference/setNbOfRhoCells 18
/Par04/inference/setNbOfPhiCells 50
/Par04/inference/setNbOfZCells 45
11. Python scripts for training
--------------
The scripts available in the training folder were used to firstly convert
the ROOT files to the h5 files, preprocess the data and then train
the VAE model of this example. More details can be found in
training/README.
12. Public data
--------------
Data generated with full simulation with this example has been published on zenodo:
https://doi.org/10.5281/zenodo.6082201
Reference in New Issue View Git Blame Copy Permalink