Gabriele Cosmo
139 lines
4.5 KiB
Plaintext
139 lines
4.5 KiB
Plaintext
# Example molecularDNA History
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See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
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which **must** added in reverse chronological order (newest at the top).
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It must **not** be used as a substitute for writing good git commit messages!
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-------------------------------------------------------------------------------
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## 2024-11-05 H. Tran (molecularDNA-V11-02-13)
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- added missing plasmid analysis root macro file
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## 2024-11-04 S. Incerti (molecularDNA-V11-02-12)
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- updated README and .README
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## 2024-10-31 K. Chatzipapas (molecularDNA-V11-02-11)
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- Adding chromosomal geometry related files
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human_cell_chromosome.mac
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human_cell_chromosome.C
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human_cell_chromosome.py
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human_cell_chromosome.txt
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## 2024-10-22 Hoang Tran (molecularDNA-V11-02-10)
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- Corrected README files for plasmid geometry.
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## 2024-10-17 Hoang Tran (molecularDNA-V11-02-09)
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- Moved from extended example to advanced example.
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## 2024-10-07 Hoang Tran (molecularDNA-V11-02-08)
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- Added plasmid geometry
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## 2024-10-03 Hoang Tran (molecularDNA-V11-02-07)
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- Modified the molecule names of OH, HO2, O in MoleculeDefinition.
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Each molecule configuration has a molecule definition.
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## 2024-10-02 S. Incerti (molecularDNA-V11-02-06)
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- added more comments in ChromosomeMessenger for rod
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## 2024-09-16 S. Incerti (molecularDNA-V11-02-05)
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- fixed coding conventions violations
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## 2024-09-06 S. Incerti (molecularDNA-V11-02-04)
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- updated README
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## 2024-09-05 S. Incerti (molecularDNA-V11-02-03)
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- commented Geant4 macros
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- commented README
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## 2024-08-20 H. Tran (molecularDNA-V11-02-02)
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- modification of TimeStepModel interface
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- used the physico-chemistry builder
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- edited README files
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## 2024-07-29 S. Incerti (molecularDNA-V11-02-01)
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- Fixed bug in DNAGeometryMessenger
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## 2024-04-18 H. Tran (molecularDNA-V11-02-00)
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- Updated /dnageom/interactionDirectRange to 2.0 angstrom
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## 2023-11-09 H. Tran (molecularDNA-V11-01-08)
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- Added info in .README.txt and README files
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## 2023-11-07 I. Hrivnacova (molecularDNA-V11-01-07)
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- Fixed formatting in .README.txt
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## 2023-09-13 I. Hrivnacova (molecularDNA-V11-01-06)
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- Removed unused public data member
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PrimaryGeneratorSourceGRASCSV::nLineCounter
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## 2023-08-28 Hoang Tran (molecularDNA-V11-01-05)
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- add the geometry files for HTB177 and MCF-7 cell lines.
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## 2023-05-31 Hoang Tran (molecularDNA-V11-01-04)
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- restore the correction of the material bug
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## 2023-04-20 Ronny Stanzani (molecularDNA-V11-01-03)
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- Add the ability to read particles from a space phase file (csv)
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- Overall code revision with clang-tidy
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## 2023-02-07 Hoang Tran (molecularDNA-V11-01-02)
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- correct the material bug in moleculardna example
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- add /scheduler/endTime 1 us in ecoli.mac and cylinders.mac
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## 2023-01-13 Ben Morgan (molecularDNA-V11-01-01)
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- Migrate data download to CERN EOS area for examples
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## 2022-12-12 Hoang Tran (molecularDNA-V11-01-00)
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- update ecoli.mac file (Nathanael's parameter)
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## 2022-11-15 Hoang Tran (molecularDNA-V11-00-11)
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- correct ecoli.mac file
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## 2022-10-24 Konstantinos Chatzipapas (molecularDNA-V11-00-10)
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- Add repair-survival-models
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- molecularDNArepair.py
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- molecularDNAsurvival.py (beta)
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- Update ecoli files (fix bug)
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- Update vis.mac and cylinders.mac
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## 2022-09-20 Hoang Tran (molecularDNA-V11-00-09)
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- Fixed the examples naming conventions violations
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- reduce event number of ecoli.mac
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## 2022-08-30 Vladimir Ivanchenko (molecularDNA-V11-00-08)
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- ChemistryList - added forgotten header
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## 2022-08-27 Hoang Tran (molecularDNA-V11-00-07)
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- Fix smart pointer warning in gcc 12.1.
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- Fix typo in the human_cell.C.
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## 2022-07-12 Konstantinos Chatzipapas (molecularDNA-V11-00-06)
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- Fix ecoli.C minor bug on filename.
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## 2022-06-10 Sergio Losilla (molecularDNA-V11-00-05)
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- Added missing headers.
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## 2022-05-03 Konstantinos Chatzipapas (molecularDNA-V11-00-04)
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- add ecoli.C macro file
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- add createSDD.py
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## 2022-04-14 Hoang Tran (molecularDNA-V11-00-03)
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- correct a minor mistake in AnalysisManager
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- Add Complexity Frequency in cylinder.C
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- add human_cell.C macro file
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## 2022-02-27 Vladimir Ivanchenko (molecularDNA-V11-00-02)
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- PhysicsList - added DecayPhysics and RadioactiveDecayPhysics
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- ParallelWorldPhysics - minor clean-up
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- molecular.cc - updated according to the recent recommendations:
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removed ifdef, removed RanecuEngine, use visualisation in
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the interactive session only, use G4RunManagerFactory
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## 2022-02-17 Hoang Tran (molecularDNA-V11-00-01)
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- modify Chemistry list
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- timeout for the geometry data download
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- the exception message in DNAGeometryMessenger::SetNewValue
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## 2022-01-07 Hoang Tran (molecularDNA-V11-00-00)
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- initial tag
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