Gabriele Cosmo
47 lines
3.6 KiB
Plaintext
47 lines
3.6 KiB
Plaintext
############################################## Macro file for Analysis ##############################################
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#
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#============================================ PARAMETERS FOR DAMAGES ============================================
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#" **Note: "#" is used for comments. Thereby, remove the "#" at the beginning of folowing commands to use them.
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#/ana/cellNucleusName Fibroblast # Optional;
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#/ana/ouputName Output0.dat #Set name for output file, default is Output.dat
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#/ana/thresholdFordirectSBSelection 17.5 # eV; Threshold for selecting direct damages; default value is 17.5 eV
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#/ana/probForIndirectSBSelection 40 # %; Propability for selecting indirect damages; default value is 40 %
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#/ana/skipIndirectDamages # Use it if users want to skip analyzing indirect damages
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#
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#======================================= PARAMETERS FOR CLASSIFYING DAMAGES =======================================
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## **Note: For classifying damages, repair models (TLK, LEMIV..), user can load damages from an existing SDD file.
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#/ana/loadDamagesFromSDD SDDformat_Output.dat #load damages from existing SDD file. It'll skip analyzing root files.
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#/ana/BpForDSB 10 # The minimum distance between two clusters, default value is 10
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#/ana/unitOfNormalization 2 #unit type for normization: 1: [Gy-1 * Gbp-1]; 2 : [Gy-1]; default is 1
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#
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#============================================ PARAMETERS FOR TLK MODEL ============================================
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/ana/TLK/used true #flag to enable/disable TLK model. Enabled if: true
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/ana/TLK/lambda1 3.0 #λ1 and λ2 are respectively simple DSB and complex repair probability
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/ana/TLK/lambda2 0.03 #λ1 and λ2 are respectively simple DSB and complex repair probability
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/ana/TLK/beta1 0.01 #β1 and β2 are respectively simple DSB and complex misrepair probability
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/ana/TLK/beta2 0.06 #β1 and β2 are respectively simple DSB and complex misrepair probability
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/ana/TLK/eta 0.0002 # h-1;a binary misrepair probability ; 0.0011 for DNAFabric fibroblast
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#/ana/TLK/eta 0.0011 # h-1;a binary misrepair probability; 0.0011 for DNAFabric fibroblast
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/ana/TLK/doseMax 6.0 #Compute SF up to doseMax Gy and with step deltaDose
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/ana/TLK/deltaDose 0.25 #Compute SF up to doseMax Gy and with step deltaDose
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#
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#============================================ PARAMETERS FOR LEMIV MODEL ============================================
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#
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/ana/LEMIV/used true #flag to enable/disable LEMIV model. Enabled if: true
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#/ana/LEMIV/loopLength 2E6 #length of the loop in bp, default 2Mbp
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/ana/LEMIV/Funrej 0 #Funrej is the fraction of DSBs that are not repaired even for late times
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/ana/LEMIV/Tfast 0.24 #constant time in h-1
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/ana/LEMIV/Tslow 2.81 #constant time in h-1
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/ana/LEMIV/timeMax 25 # compute fraction of unrejoined DSB up to timeMax h at deltaT step
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/ana/LEMIV/deltaTime 0.25 # compute fraction of unrejoined DSB up to timeMax h at deltaT step
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#
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#============================================ PARAMETERS FOR BELOV MODEL ============================================
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# **Note: The implementation of BELOV model in dsbandrepair is still in development
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/ana/BELOV/used false #flag to enable/disable BELOV model. Enabled if: true
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/ana/BELOV/Nirrep 0.035 #Nirrep fraction, if it's not be set, fraction of complex DSB will be used
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/ana/BELOV/Dz 1.0 #Dz |