Gabriele Cosmo
122 lines
4.0 KiB
C++
122 lines
4.0 KiB
C++
//
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// ********************************************************************
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// * License and Disclaimer *
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// * *
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// * The Geant4 software is copyright of the Copyright Holders of *
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// * the Geant4 Collaboration. It is provided under the terms and *
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// * conditions of the Geant4 Software License, included in the file *
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// * LICENSE and available at http://cern.ch/geant4/license . These *
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// * include a list of copyright holders. *
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// * *
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// * Neither the authors of this software system, nor their employing *
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// * institutes,nor the agencies providing financial support for this *
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// * work make any representation or warranty, express or implied, *
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// * regarding this software system or assume any liability for its *
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// * use. Please see the license in the file LICENSE and URL above *
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// * for the full disclaimer and the limitation of liability. *
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// * *
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// * This code implementation is the result of the scientific and *
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// * technical work of the GEANT4 collaboration. *
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// * By using, copying, modifying or distributing the software (or *
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// * any work based on the software) you agree to acknowledge its *
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// * use in resulting scientific publications, and indicate your *
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// * acceptance of all terms of the Geant4 Software license. *
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// ********************************************************************
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//
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//
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//
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/// \file Damage.hh
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/// \brief Definition of the Damage class
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#ifndef DAMAGE_HH
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#define DAMAGE_HH
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struct Position
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{
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Position(double v1,double v2,double v3): x(v1), y(v2), z(v3) {}
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double x=0;
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double y=0;
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double z=0;
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void setX(double v) {x=v;}
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void setY(double v) {y=v;}
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void setZ(double v) {z=v;}
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};
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/// \brief defines a DNA damage
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class Damage
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{
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public:
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/** DNA Damage type
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* Defines the molecule type of damaged DNA following SDD formalism
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*/
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enum DamageType{
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fOther = -1,
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fBackbone = 0,
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fBase = 1
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};
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/** DNA Damage cause
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* Defines the cause of DNA damage following SDD formalism
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*/
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enum DamageCause{
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fUnknown = -1,
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fDirect = 0,
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fIndirect = 1
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};
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/** Damaged DNA
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* Defines the damaged DNA structure following SDD formalism
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*/
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enum DamageChromatin{
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fUnspecified = 0,
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fHeterochromatin = 1,
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fEuchromatin = 2,
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fFreeDNA = 3,
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fOtherDNA = 4
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};
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/// \brief constructor
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Damage(DamageType,unsigned int,unsigned int,unsigned int,unsigned long int,Position,DamageCause,DamageChromatin);
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/// \brief destructor
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~Damage() = default;
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// Getters and setters
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void SetDamageType(DamageType pVal){fType=pVal;};
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DamageType GetDamageType(){return fType;};
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void SetChromo(unsigned int pVal){fChromo=pVal;};
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unsigned int GetChromo() const{return fChromo;};
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void SetEvt(unsigned int pVal){fEvt=pVal;};
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unsigned int GetEvt() const{return fEvt;};
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void SetStrand(unsigned int pVal){fStrand=pVal;};
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unsigned int GetStrand() const{return fStrand;};
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void SetCopyNb(unsigned long int pVal){fCopyNb=pVal;};
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unsigned long int GetCopyNb() const{return fCopyNb;};
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void SetCause(DamageCause pVal){fCause=pVal;};
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DamageCause GetCause() const{return fCause;};
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void SetDamageChromatin(DamageChromatin pVal){fChromatin=pVal;};
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DamageChromatin GetDamageChromatin(){return fChromatin;};
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bool operator != (const Damage& ) const;
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bool operator == (const Damage& ) const;
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private:
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DamageType fType; // SB or BD?
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unsigned int fChromo; // chromosome ID
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unsigned int fEvt; // event number
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unsigned int fStrand; // Strand
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unsigned long int fCopyNb; // Copy number
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Position fPosition;// Position
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DamageCause fCause; // Direct or indirect damage?
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DamageChromatin fChromatin; // hetero or euchromatin?
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};
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#endif // DAMAGE_HH
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