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geant4/source/processes/electromagnetic/dna/utils/src/G4DNADamage.cc
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2022-12-09 14:43:28 +01:00

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//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
#include "G4DNADamage.hh"
#include "G4UnitsTable.hh"
G4ThreadLocal G4DNADamage* G4DNADamage::fpInstance(nullptr);
G4DNAIndirectHit::G4DNAIndirectHit(const G4String& baseName,
const G4Molecule* molecule,
const G4ThreeVector& position,
G4double time) :
G4VDNAHit(), fpMolecule(molecule)
{
fBaseName = baseName;
fPosition = position;
fTime = time;
}
G4DNAIndirectHit::~G4DNAIndirectHit()
{
if (fpMolecule != nullptr) delete fpMolecule;
fpMolecule = nullptr;
}
void G4DNAIndirectHit::Print()
{
G4cout << "Reaction : " << fpMolecule->GetName() << " + " << fBaseName
<< " at position : " << G4BestUnit(fPosition, "Length")
<< " and time : " << G4BestUnit(fTime, "Time") << G4endl;
}
G4DNADamage* G4DNADamage::Instance()
{
if (fpInstance == nullptr) new G4DNADamage();
return fpInstance;
}
G4DNADamage::G4DNADamage()
{
fJustCountDamage = false;
fNIndirectDamage = 0;
fpInstance = this;
}
G4DNADamage::~G4DNADamage()
{
for (G4int i = 0; i < (G4int) fIndirectHits.size(); ++i)
{
if (fIndirectHits[i]) delete fIndirectHits[i];
}
fIndirectHits.clear();
}
void G4DNADamage::DeleteInstance()
{
if (fpInstance) delete fpInstance;
fpInstance = nullptr;
}
void G4DNADamage::Reset()
{
fNIndirectDamage = 0;
for (G4int i = 0; i < (G4int) fIndirectHits.size(); ++i)
{
if (fIndirectHits[i]) delete fIndirectHits[i];
}
fIndirectHits.clear();
}
void G4DNADamage::AddIndirectDamage(const G4String& baseName,
const G4Molecule* molecule,
const G4ThreeVector& position,
G4double time)
{
if (fJustCountDamage)
{
fNIndirectDamage++;
return;
}
G4DNAIndirectHit* indirectHit = nullptr;
auto it = fMolMap.find(*molecule);
if (it == fMolMap.cend())
{
G4Molecule* mol(nullptr);
fMolMap[*molecule] = (mol = new G4Molecule(*molecule));
indirectHit = new G4DNAIndirectHit(baseName, mol, position, time);
}
else
{
indirectHit = new G4DNAIndirectHit(baseName, it->second, position, time);
}
fIndirectHits.push_back(indirectHit);
}