Gabriele Cosmo
118 lines
3.8 KiB
C++
118 lines
3.8 KiB
C++
//
|
|
// ********************************************************************
|
|
// * License and Disclaimer *
|
|
// * *
|
|
// * The Geant4 software is copyright of the Copyright Holders of *
|
|
// * the Geant4 Collaboration. It is provided under the terms and *
|
|
// * conditions of the Geant4 Software License, included in the file *
|
|
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
|
// * include a list of copyright holders. *
|
|
// * *
|
|
// * Neither the authors of this software system, nor their employing *
|
|
// * institutes,nor the agencies providing financial support for this *
|
|
// * work make any representation or warranty, express or implied, *
|
|
// * regarding this software system or assume any liability for its *
|
|
// * use. Please see the license in the file LICENSE and URL above *
|
|
// * for the full disclaimer and the limitation of liability. *
|
|
// * *
|
|
// * This code implementation is the result of the scientific and *
|
|
// * technical work of the GEANT4 collaboration. *
|
|
// * By using, copying, modifying or distributing the software (or *
|
|
// * any work based on the software) you agree to acknowledge its *
|
|
// * use in resulting scientific publications, and indicate your *
|
|
// * acceptance of all terms of the Geant4 Software license. *
|
|
// ********************************************************************
|
|
//
|
|
// The code was written by :
|
|
// *Louis Archambault louis.archambault@phy.ulaval.ca,
|
|
// *Luc Beaulieu beaulieu@phy.ulaval.ca
|
|
// +Vincent Hubert-Tremblay at tigre.2@sympatico.ca
|
|
//
|
|
//
|
|
// *Centre Hospitalier Universitaire de Quebec (CHUQ),
|
|
// Hotel-Dieu de Quebec, departement de Radio-oncologie
|
|
// 11 cote du palais. Quebec, QC, Canada, G1R 2J6
|
|
// tel (418) 525-4444 #6720
|
|
// fax (418) 691 5268
|
|
//
|
|
// + Université Laval, Québec (QC) Canada
|
|
//*******************************************************//
|
|
|
|
//*******************************************************
|
|
//
|
|
// DicomHandler.hh :
|
|
// - Handling of DICM images
|
|
// - Transforming *.dcm to *.g4 ( pixels->density )
|
|
// - Reading headers and pixels
|
|
// - Transforming pixel to density and creating *.g4
|
|
// files
|
|
// - Functions are in DicomHandler.cc
|
|
//
|
|
//
|
|
// Base on previous code by :
|
|
// Dragan Tubic <tdragan@gel.ulaval.ca>
|
|
//*******************************************************
|
|
|
|
#ifndef DicomHandler_h
|
|
#define DicomHandler_h 1
|
|
|
|
#include <cstdio>
|
|
#include <map>
|
|
#include <fstream>
|
|
|
|
#include "globals.hh"
|
|
|
|
class DicomHandler
|
|
{
|
|
public:
|
|
|
|
DicomHandler();
|
|
|
|
~DicomHandler();
|
|
|
|
G4int ReadFile(FILE *,char *);
|
|
G4int ReadData(FILE *,char *); // note: always use readHeader
|
|
// before readData
|
|
|
|
// use ImageMagick to display the image
|
|
//G4int displayImage(char[500]);
|
|
|
|
void CheckFileFormat();
|
|
|
|
private:
|
|
template <class Type> void GetValue(char *, Type &);
|
|
|
|
private:
|
|
|
|
const int DATABUFFSIZE;
|
|
const int LINEBUFFSIZE;
|
|
const int FILENAMESIZE;
|
|
|
|
void GetInformation(G4int &, char *);
|
|
G4double Pixel2density(G4int pixel);
|
|
void ReadMaterialIndices( std::ifstream& finData);
|
|
size_t GetMaterialIndex( G4double density );
|
|
void StoreData(std::ofstream& foutG4DCM);
|
|
|
|
short compression;
|
|
G4int nFiles;
|
|
short rows;
|
|
short columns;
|
|
short bitAllocated;
|
|
G4int maxPixelValue, minPixelValue;
|
|
|
|
G4double pixelSpacingX, pixelSpacingY;
|
|
G4double sliceThickness;
|
|
G4double sliceLocation;
|
|
|
|
G4int rescaleIntercept, rescaleSlope;
|
|
|
|
G4bool littleEndian, implicitEndian;
|
|
short pixelRepresentation;
|
|
|
|
G4int** tab;
|
|
std::map<G4double,G4String> fMaterialIndices;
|
|
};
|
|
#endif
|
|
|