Gabriele Cosmo
188 lines
6.6 KiB
C++
188 lines
6.6 KiB
C++
//
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// ********************************************************************
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// * License and Disclaimer *
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// * *
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// * The Geant4 software is copyright of the Copyright Holders of *
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// * the Geant4 Collaboration. It is provided under the terms and *
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// * conditions of the Geant4 Software License, included in the file *
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// * LICENSE and available at http://cern.ch/geant4/license . These *
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// * include a list of copyright holders. *
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// * *
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// * Neither the authors of this software system, nor their employing *
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// * institutes,nor the agencies providing financial support for this *
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// * work make any representation or warranty, express or implied, *
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// * regarding this software system or assume any liability for its *
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// * use. Please see the license in the file LICENSE and URL above *
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// * for the full disclaimer and the limitation of liability. *
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// * *
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// * This code implementation is the result of the scientific and *
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// * technical work of the GEANT4 collaboration. *
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// * By using, copying, modifying or distributing the software (or *
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// * any work based on the software) you agree to acknowledge its *
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// * use in resulting scientific publications, and indicate your *
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// * acceptance of all terms of the Geant4 Software license. *
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// ********************************************************************
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//
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// This example is provided by the Geant4-DNA collaboration
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// Any report or published results obtained using the Geant4-DNA software
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// shall cite the following Geant4-DNA collaboration publication:
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// Med. Phys. 37 (2010) 4692-4708
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// and papers
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// M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
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// O. Belov et al. Physica Medica 32 (2016) 1510-1520
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// The Geant4-DNA web site is available at http://geant4-dna.org
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//
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// -------------------------------------------------------------------
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// November 2016
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// -------------------------------------------------------------------
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//
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/// \file Run.hh
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/// \brief Definition of the Run class
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#ifndef Run_h
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#define Run_h 1
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#include "G4Run.hh"
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#include "G4VProcess.hh"
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#include "globals.hh"
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#include <map>
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#include "G4Molecule.hh"
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class DetectorConstruction;
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class G4ParticleDefinition;
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//class NeuronLoadDataFile;
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class G4Molecule;
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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class Run : public G4Run
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{
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public:
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Run(DetectorConstruction*);
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~Run();
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public:
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void SetPrimary(G4ParticleDefinition* particle, G4double energy);
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void AddPrimaryLET(G4double let);
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void SetTrackLength(G4double tracklen);
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void CountProcesses(const G4VProcess* process);
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void ParticleCount(G4String, G4double);
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void ParticleCountNeuron(G4String, G4double);
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void MoleculeCount(G4String, G4double);
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void MoleculeCountNeuron(G4Molecule* molecule);
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void AddEdep (G4double edep);
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void AddEflow (G4double eflow);
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void ParticleFlux(G4String, G4double);
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virtual void Merge(const G4Run*);
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void EndOfRun();
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// Edep in all volume
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G4double GetEdepALL(){return fEdepAll;}
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void SetEdepALL(G4double vall){ fEdepAll = vall;}
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void AddEdepALL (G4double vall)
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{
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fEdepAll += vall;
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fEdepAll_err += vall*vall;
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}
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// 0. Edep in homogeneous Medium
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G4double GetEdepMedium(){return fEdepMedium;}
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void SetEdepMedium(G4double vall){ fEdepMedium = vall;}
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void AddEdepMedium (G4double vall)
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{
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fEdepMedium += vall;
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fEdepMedium_err += vall*vall;
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}
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// 1. Edep in Bounding Slice Volume
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G4double GetEdepSlice(){return fEdepSlice;}
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void SetEdepSlice(G4double vall){ fEdepSlice = vall;}
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void AddEdepSlice (G4double vall)
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{
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fEdepSlice += vall;
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fEdepSlice_err += vall*vall;
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}
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// 2. Edep in Soma volume
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G4double GetEdepSoma(){return fEdepSoma;}
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void SetEdepSoma(G4double vall){ fEdepSoma = vall;}
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void AddEdepSoma (G4double vall)
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{
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fEdepSoma += vall;
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fEdepSoma_err += vall*vall;
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}
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void AddSomaCompart(G4int i, G4double x){ fSoma3DEdep[i] +=x;}
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G4double GetSomaCompart(G4int i){ return fSoma3DEdep[i];}
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//G4double GetSomalength(G4int i){ return fSoma3DEdep[i];}
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//G4ThreeVector GetVectSoma(G4int i) {return fSomaCompartments[i];}
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// 3. Edep in Dendrites volume
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G4double GetEdepDend(){return fEdepDend;}
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void SetEdepDend(G4double vall){ fEdepDend = vall;}
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void AddEdepDend (G4double vall)
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{
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fEdepDend += vall;
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fEdepDend_err += vall*vall;
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}
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void AddDendCompart(G4int i, G4double x){ fDend3DEdep[i] +=x;}
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G4double GetDendCompart(G4int i){ return fDend3DEdep[i];}
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// 4. Edep in Axon volume
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G4double GetEdepAxon(){return fEdepAxon;}
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void SetEdepAxon(G4double vall){ fEdepAxon = vall;}
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void AddEdepAxon (G4double vall)
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{
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fEdepAxon += vall;
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fEdepAxon_err += vall*vall;
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}
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void AddAxonCompart(G4int i, G4double x){ fAxon3DEdep[i] +=x;}
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G4double GetAxonCompart(G4int i){ return fAxon3DEdep[i];}
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// 5. Edep in whole Neuron volume
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G4double GetEdepNeuron(){return fEdepNeuron;}
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void SetEdepNeuron(G4double vall){ fEdepNeuron = vall;}
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void AddEdepNeuron (G4double vall)
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{
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fEdepNeuron += vall;
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fEdepNeuron_err += vall*vall;
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}
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private:
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struct ParticleData {
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ParticleData()
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: fCount(0), fEmean(0.), fEmin(0.), fEmax(0.) {}
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ParticleData(G4int count, G4double ekin, G4double emin, G4double emax)
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: fCount(count), fEmean(ekin), fEmin(emin), fEmax(emax) {}
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G4int fCount;
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G4double fEmean;
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G4double fEmin;
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G4double fEmax;
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};
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//NeuronLoadDataFile * fNeuronLoadParamz;
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DetectorConstruction* fDetector;
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G4ParticleDefinition* fParticle;
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G4double fEkin;
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G4double fLET, fLET2;
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G4double ftrackLength;
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G4double fTrackLen, fTrackLen2;
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G4int fNParticle;
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G4double * fSoma3DEdep;
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G4double * fDend3DEdep ;
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G4double * fAxon3DEdep ;
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G4double * fNeuron3DEdep;
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G4double fEdepAll, fEdepAll_err,fEdepMedium, fEdepMedium_err, fEdepSlice,
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fEdepSlice_err,fEdepSoma,fEdepSoma_err, fEdepDend, fEdepDend_err,fEdepAxon,
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fEdepAxon_err,fEdepNeuron, fEdepNeuron_err;
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G4int fmolNum, fmolNum2;
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G4double fEnergyFlow, fEnergyFlow2;
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std::map<G4String,G4int> fMoleculeNumber;
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std::map<G4String,G4int> fProcCounter;
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std::map<G4String,ParticleData> fParticleDataMap1;
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std::map<G4String,ParticleData> fParticleDataMap2;
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};
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#endif
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