Gabriele Cosmo
141 lines
4.5 KiB
Plaintext
141 lines
4.5 KiB
Plaintext
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$Id: README,v 1.6 2009/04/29 14:17:03 sincerti Exp $
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=========================================================
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Geant4 - Microdosimetry example
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=========================================================
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README file
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----------------------
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CORRESPONDING AUTHOR
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S. Incerti (a, *) et al.
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a. Centre d'Etudes Nucleaires de Bordeaux-Gradignan
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(CENBG), IN2P3 / CNRS / Bordeaux 1 University, 33175 Gradignan, France
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* e-mail:incerti@cenbg.in2p3.fr
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---->0. INTRODUCTION.
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The microdosimetry example simulates the track of a 10 keV Helium+ (positive
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charge is +e) particle in liquid water using only Geant4-DNA processes.
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---->1. GEOMETRY SET-UP.
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The geometry is a 1 mm side cube of liquid water.
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---->2. SET-UP
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- a standard Geant4 example GNUmakefile is provided
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setup with:
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compiler = gcc-3.4.6
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G4SYSTEM = linux-g++
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The following section gives the necessary environment variables.
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------->>2.1 ENVIRONMENT VARIABLES
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All variables are defined with their default value.
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- G4SYSTEM = Linux-g++
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- G4INSTALL points to the installation directory of GEANT4;
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- G4LIB point to the compiled libraries of GEANT4;
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- G4WORKDIR points to the work directory;
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- CLHEP_BASE_DIR points to the installation directory of CHLEP;
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- G4LEDATA points to the low energy electromagnetic libraries;
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- LD_LIBRARY_PATH = $CLHEP_BASE_DIR/lib
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- G4LEVELGAMMADATA points to the photoevaporation library;
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- NeutronHPCrossSections points to the neutron data files;
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- G4RADIOACTIVEDATA points to the libraries for radio-active decay
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hadronic processes;
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However, the $G4LEVELGAMMADATA, $NeutronHPCrossSections and $G4RADIOACTIVEDATA
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variables do not need to be defined for this example.
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Once these variables have been set, simply type gmake to compile the
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Microdosimetry example.
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------->>2.2 VISUALIZATION
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Visualization is not activated by default.
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---->3. HOW TO RUN THE EXAMPLE
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In interactive mode, run:
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> $G4WORDIR/bin/$G4SYSTEM/Microdosimetry
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The macro microdosimetry.mac is executed by default.
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To get visualization, make sure to uncomment the /vis/... lines in the macro.
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---->4. PHYSICS
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This example shows how to use the Geant4-DNA processes AND how to affect them a
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name.
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Look at the PhyscisList.cc file.
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---->5. SIMULATION OUTPUT AND RESULT ANALYZIS
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This example does not need any external analysis package.
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The output results consists in a track.txt file, containing at each line :
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- the type of particle for the current step
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- the type of process for the current step
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- the track position of the current step (in nanometers)
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This file can be easily analyzed using for example the provided ROOT macro
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file plot.C; to do so :
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* be sure to have ROOT installed on your machine
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* be sure to be in the microdosimetry directory
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* launch ROOT by typing root
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* under your ROOT session, type in : .X plot.C to execute the macro file
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* alternatively you can type directly under your session : root plot.C
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The naming scheme on the displayed ROOT plots is as follows (see SteppingAction.cc):
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-particles:
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e- : 1
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proton : 2
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hydrogen : 3
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alpha : 4
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alpha+ : 5
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helium : 6
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-processes:
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e-_G4DNAElastic : 11
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e-_G4DNAExcitation : 12
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e-_G4DNAIonisation : 13
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proton_G4DNAExcitation : 14
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proton_G4DNAIonisation : 15
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proton_G4DNAChargeDecrease : 16
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hydrogen_G4DNAIonisation : 17
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hydrogen_G4DNAChargeIncrease : 18
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alpha_G4DNAExcitation : 19
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alpha_G4DNAIonisation : 20
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alpha_G4DNAChargeDecrease : 21
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alpha+_G4DNAExcitation : 22
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alpha+_G4DNAIonisation : 23
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alpha+_G4DNAChargeDecrease : 24
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alpha+_G4DNAChargeIncrease : 25
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helium_G4DNAExcitation : 26
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helium_G4DNAIonisation : 27
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helium_G4DNAChargeIncrease : 28
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---------------------------------------------------------------------------
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Should you have any enquiry, please do not hesitate to contact:
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incerti@cenbg.in2p3.fr
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