lars/geant4
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity
Files
74cad5e589f2f0ce98503e2246afb07c62ffbff0
geant4/examples/advanced/microbeam/plot.C
T
Gabriele Cosmo 74cad5e589 Import Geant4 9.3.0 source tree
2016-06-09 16:15:05 +02:00

433 lines
12 KiB
C++
Executable File
Raw Blame History

// -------------------------------------------------------------------
// $Id: plot.C,v 1.5 2009/04/30 10:23:57 sincerti Exp $
// -------------------------------------------------------------------
//
// *********************************************************************
// To execute this macro under ROOT,
// 1 - launch ROOT (usually type 'root' at your machine's prompt)
// 2 - type '.X plot.C' at the ROOT session prompt
// This macro needs five files : dose.txt, stoppingPower.txt, range.txt,
// 3DDose.txt and beamPosition.txt
// written by S. Incerti and O. Boissonnade, 10/04/2006
// *********************************************************************
{
gROOT->Reset();
//****************
// DOSE IN NUCLEUS
//****************
gStyle->SetOptStat(0000);
gStyle->SetOptFit();
gStyle->SetPalette(1);
gROOT->SetStyle("Plain");
Double_t scale;
c1 = new TCanvas ("c1","",20,20,1200,900);
c1.Divide(4,3);
FILE * fp = fopen("dose.txt","r");
Float_t nD,cD;
Int_t ncols=0;
Int_t nlines = 0;
TH1F *h1 = new TH1F("Absorbed dose distribution in Nucleus","Dose distribution in Nucleus",100,0.001,0.5);
TH1F *h10 = new TH1F("Absorbed dose distribution in Cytoplasm","Dose distribution in Cytoplasm",100,0.001,0.2);
while (1)
{
ncols = fscanf(fp,"%f %f",&nD,&cD);
if (ncols < 0) break;
h1->Fill(nD);
h10->Fill(cD);
nlines++;
}
fclose(fp);
c1.cd(2);
scale = 1/h1->Integral();
h1->Scale(scale);
h1->Draw();
h1->GetXaxis()->SetLabelSize(0.025);
h1->GetYaxis()->SetLabelSize(0.025);
h1->GetXaxis()->SetTitleSize(0.035);
h1->GetYaxis()->SetTitleSize(0.035);
h1->GetXaxis()->SetTitleOffset(1.4);
h1->GetYaxis()->SetTitleOffset(1.4);
h1->GetXaxis()->SetTitle("Absorbed dose (Gy)");
h1->GetYaxis()->SetTitle("Fraction of events");
h1->SetLineColor(3);
h1->SetFillColor(3);
//*****************
// DOSE IN CYTOPLASM
//*****************
c1.cd(6);
scale = 1/h10->Integral();
h10->Scale(scale);
h10->Draw();
h10->GetXaxis()->SetLabelSize(0.025);
h10->GetYaxis()->SetLabelSize(0.025);
h10->GetXaxis()->SetTitleSize(0.035);
h10->GetYaxis()->SetTitleSize(0.035);
h10->GetXaxis()->SetTitleOffset(1.4);
h10->GetYaxis()->SetTitleOffset(1.4);
h10->GetXaxis()->SetTitle("Absorbed dose (Gy)");
h10->GetYaxis()->SetTitle("Fraction of events");
h10->SetLineColor(2);
h10->SetFillColor(2);
//********************************
// STOPPING POWER AT CELL ENTRANCE
//********************************
gStyle->SetOptStat(0000);
gStyle->SetOptFit();
gStyle->SetPalette(1);
gROOT->SetStyle("Plain");
Float_t d;
FILE * fp = fopen("stoppingPower.txt","r");
TH1F *h2 = new TH1F("Beam stopping Power at cell entrance","h1",200,0,300);
while (1)
{
ncols = fscanf(fp,"%f",&d);
if (ncols < 0) break;
h2->Fill(d);
nlines++;
}
fclose(fp);
c1.cd(9);
scale = 1/h2->Integral();
h2->Scale(scale);
h2->Draw();
h2->GetXaxis()->SetLabelSize(0.025);
h2->GetYaxis()->SetLabelSize(0.025);
h2->GetXaxis()->SetTitleSize(0.035);
h2->GetYaxis()->SetTitleSize(0.035);
h2->GetXaxis()->SetTitleOffset(1.4);
h2->GetYaxis()->SetTitleOffset(1.4);
h2->GetXaxis()->SetTitle("dE/dx (keV/µm)");
h2->GetYaxis()->SetTitle("Fraction of events");
h2->SetTitle("dE/dx at cell entrance");
h2->SetFillColor(4);
h2->SetLineColor(4);
h2->Fit("gaus");
gaus->SetLineColor(6);
h2->Fit("gaus");
//**************
// RANGE IN CELL
//**************
Float_t Xc,Zc,X1,Y1,Z1,x,z,X2,Y2,Z2;
Float_t d;
// X position of target in World
Xc = -1295.59e3 - 955e3*sin(10*TMath::Pi()/180);
// Z position of target in World
Zc = -1327e3 + 955e3*cos(10*TMath::Pi()/180);
// Line alignment (cf MicrobeamEMField.cc)
Xc = Xc + 5.24*cos(10*TMath::Pi()/180);
Zc = Zc + 5.24*sin(10*TMath::Pi()/180);
FILE * fp = fopen("range.txt","r");
TNtuple *ntuple = new TNtuple("Rmax","ntuple","Z2:Y2:X2");
while (1)
{
ncols = fscanf(fp,"%f %f %f",&X1,&Y1,&Z1);
if (ncols < 0) break;
x = X1-Xc;
z = Z1-Zc;
Z2 = z*cos(10*TMath::Pi()/180)-x*sin(10*TMath::Pi()/180);
X2 = z*sin(10*TMath::Pi()/180)+x*cos(10*TMath::Pi()/180);
Y2 = Y1;
ntuple->Fill(Z2,Y2,X2);
nlines++;
}
fclose(fp);
c1.cd(10);
ntuple->Draw("X2:Z2","abs(X2)<50","surf3");
gPad->SetLogz();
htemp->GetXaxis()->SetLabelSize(0.025);
htemp->GetYaxis()->SetLabelSize(0.025);
htemp->GetZaxis()->SetLabelSize(0.025);
htemp->GetXaxis()->SetTitleSize(0.035);
htemp->GetYaxis()->SetTitleSize(0.035);
htemp->GetXaxis()->SetTitleOffset(1.4);
htemp->GetYaxis()->SetTitleOffset(1.4);
htemp->GetXaxis()->SetTitle("Z (µm)");
htemp->GetYaxis()->SetTitle("X (µm)");
htemp->SetTitle("Range in cell");
//*********************
// INTENSITY HISTOGRAMS
//*********************
FILE * fp = fopen("phantom.dat","r");
Float_t xVox, yVox, zVox, tmp, den, dose;
Float_t X,Y,Z;
Float_t vox = 0, mat = 0;
Float_t voxelSizeX, voxelSizeY, voxelSizeZ;
TH1F *h1 = new TH1F("h1","Nucleus marker intensity",100,1,300);
TH1F *h11 = new TH1F("h11 ","",100,1,300);
TH1F *h2 = new TH1F("h2","Cytoplasm marker intensity",100,1,300);
TH1F *h20 = new TH1F("h20 ","",100,1,300);
TNtuple *ntupleYXN = new TNtuple("NUCLEUS","ntuple","Y:X:vox");
TNtuple *ntupleZX = new TNtuple("CYTOPASM","ntuple","Z:X:vox");
TNtuple *ntupleYX = new TNtuple("CYTOPASM","ntuple","Y:X:vox");
nlines=0;
ncols=0;
while (1)
{
if ( nlines == 0 ) ncols = fscanf(fp,"%f %f %f",&tmp,&tmp,&tmp);
if ( nlines == 1 ) ncols = fscanf(fp,"%f %f %f",&voxelSizeX,&voxelSizeY,&voxelSizeZ);
if ( nlines == 2 ) ncols = fscanf(fp,"%f %f %f",&tmp,&tmp,&tmp);
if ( nlines >= 3 ) ncols = fscanf(fp,"%f %f %f %f %f %f", &X, &Y, &Z, &mat, &den, &vox);
if (ncols < 0) break;
X= X*voxelSizeX;
Y= Y*voxelSizeY;
Z= Z*voxelSizeZ;
if ( mat == 2 ) // noyau
{
if (den==1) h1->Fill( vox );
if (den==2) h11->Fill( vox );
ntupleYXN->Fill(Y,X,vox);
}
if ( mat == 1 ) // cytoplasm
{
if (den==1) h2->Fill( vox );
if (den==2) h20->Fill( vox );
ntupleZX->Fill(Z,X,vox);
ntupleYX->Fill(Y,X,vox);
}
nlines++;
}
fclose(fp);
// HISTO NUCLEUS
c1.cd(1);
h1->Draw();
h1->GetXaxis()->SetLabelSize(0.025);
h1->GetYaxis()->SetLabelSize(0.025);
h1->GetXaxis()->SetTitleSize(0.035);
h1->GetYaxis()->SetTitleSize(0.035);
h1->GetXaxis()->SetTitleOffset(1.4);
h1->GetYaxis()->SetTitleOffset(1.4);
h1->GetXaxis()->SetTitle("Voxel intensity (0-255)");
h1->GetYaxis()->SetTitle("Number of events");
h1->SetLineColor(3);
h1->SetFillColor(3); // green
h11->SetLineColor(8);
h11->SetFillColor(8); // dark green
h11->Draw("same");
// HISTO CYTOPLASM
c1.cd(5);
h2->Draw();
h2->GetXaxis()->SetLabelSize(0.025);
h2->GetYaxis()->SetLabelSize(0.025);
h2->GetXaxis()->SetTitleSize(0.035);
h2->GetYaxis()->SetTitleSize(0.035);
h2->GetXaxis()->SetTitleOffset(1.4);
h2->GetYaxis()->SetTitleOffset(1.4);
h2->GetXaxis()->SetTitle("Voxel intensity (0-255)");
h2->GetYaxis()->SetTitle("Number of events");
h2->SetLineColor(2);
h2->SetFillColor(2); // red
h20->SetLineColor(5);
h20->SetFillColor(5); // yellow (nucleoli)
h20->Draw("same");
//*************************
// CUMULATED CELL INTENSITY
//*************************
gStyle->SetOptStat(0000);
gStyle->SetOptFit();
gStyle->SetPalette(1);
gROOT->SetStyle("Plain");
//CYTOPLASM
c1.cd(7); // axe YX
TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20);
ntupleYX->Draw("Y:X>>hist","vox","colz");
gPad->SetLogz();
hist->Draw("colz");
hist->GetXaxis()->SetLabelSize(0.025);
hist->GetYaxis()->SetLabelSize(0.025);
hist->GetZaxis()->SetLabelSize(0.025);
hist->GetXaxis()->SetTitleSize(0.035);
hist->GetYaxis()->SetTitleSize(0.035);
hist->GetXaxis()->SetTitleOffset(1.4);
hist->GetYaxis()->SetTitleOffset(1.4);
hist->GetXaxis()->SetTitle("Y (µm)");
hist->GetYaxis()->SetTitle("X (µm)");
hist->SetTitle("Cytoplasm intensity on transverse section");
//NUCLEUS
c1.cd(3); // axe YX
TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20);
ntupleYXN->Draw("Y:X>>hist","vox","colz");
gPad->SetLogz();
hist->Draw("colz");
hist->GetXaxis()->SetLabelSize(0.025);
hist->GetYaxis()->SetLabelSize(0.025);
hist->GetZaxis()->SetLabelSize(0.025);
hist->GetXaxis()->SetTitleSize(0.035);
hist->GetYaxis()->SetTitleSize(0.035);
hist->GetXaxis()->SetTitleOffset(1.4);
hist->GetYaxis()->SetTitleOffset(1.4);
hist->GetXaxis()->SetTitle("Y (µm)");
hist->GetYaxis()->SetTitle("X (µm)");
hist->SetTitle("Nucleus intensity on transverse section");
//****************
// ENERGY DEPOSITS
//****************
gStyle->SetOptStat(0000);
gStyle->SetOptFit();
gStyle->SetPalette(1);
gROOT->SetStyle("Plain");
FILE * fp = fopen("3DDose.txt","r");
TNtuple *ntuple2 = new TNtuple("CELL","ntuple","yVox:xVox:dose");
TNtuple *ntuple3 = new TNtuple("CELL","ntuple","xVox:zVox:dose");
TNtuple *ntuplezyx = new TNtuple("DOSE","ntuple","zVox:yVox:xVox:dose");
while (1)
{
ncols = fscanf(fp,"%f %f %f %f",&xVox, &yVox, &zVox, &dose);
if (ncols < 0) break;
xVox= xVox*voxelSizeX;
yVox= yVox*voxelSizeY;
zVox= zVox*voxelSizeZ;
ntuple2->Fill(yVox,xVox,dose);
ntuple3->Fill(xVox,zVox,dose);
ntuplezyx->Fill(zVox,yVox,xVox,dose);
}
fclose(fp);
c1.cd(11);
TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20);
ntuple2->Draw("yVox:xVox>>hist","dose","contz");
gPad->SetLogz();
hist->Draw("contz");
hist->GetXaxis()->SetLabelSize(0.025);
hist->GetYaxis()->SetLabelSize(0.025);
hist->GetZaxis()->SetLabelSize(0.025);
hist->GetXaxis()->SetTitleSize(0.035);
hist->GetYaxis()->SetTitleSize(0.035);
hist->GetXaxis()->SetTitleOffset(1.4);
hist->GetYaxis()->SetTitleOffset(1.4);
hist->GetXaxis()->SetTitle("Y (µm)");
hist->GetYaxis()->SetTitle("X (µm)");
hist->SetTitle("Mean energy deposit -transverse- (z axis in eV)");
c1.cd(12);
TH2F *hist = new TH2F("hist","hist",50,-20,20,50,-20,20);
ntuple3->Draw("xVox:zVox>>hist","dose","contz");
gPad->SetLogz();
hist->Draw("contz");
hist->GetXaxis()->SetLabelSize(0.025);
hist->GetYaxis()->SetLabelSize(0.025);
hist->GetZaxis()->SetLabelSize(0.025);
hist->GetXaxis()->SetTitleSize(0.035);
hist->GetYaxis()->SetTitleSize(0.035);
hist->GetXaxis()->SetTitleOffset(1.4);
hist->GetYaxis()->SetTitleOffset(1.4);
hist->GetXaxis()->SetTitle("Z (µm)");
hist->GetYaxis()->SetTitle("X (µm)");
hist->SetTitle("Mean energy deposit -longitudinal- (z axis in eV)");
//*******************************
// BEAM POSITION AT CELL ENTRANCE
//*******************************
gStyle->SetOptStat(0000);
gStyle->SetOptFit();
gStyle->SetPalette(1);
gROOT->SetStyle("Plain");
Float_t bx, by;
FILE * fp = fopen("beamPosition.txt","r");
TH1F *h77 = new TH1F("Beam X transverse position at cell entrance","h1",200,-10,10);
TH1F *h88 = new TH1F("Beam Y transverse position at cell entrance","h1",200,-10,10);
while (1)
{
ncols = fscanf(fp,"%f %f",&bx, &by);
if (ncols < 0) break;
h77->Fill(bx);
h88->Fill(by);
nlines++;
}
fclose(fp);
c1.cd(4);
scale = 1/h77->Integral();
h77->Scale(scale);
h77->Draw();
h77->GetXaxis()->SetLabelSize(0.025);
h77->GetYaxis()->SetLabelSize(0.025);
h77->GetXaxis()->SetTitleSize(0.035);
h77->GetYaxis()->SetTitleSize(0.035);
h77->GetXaxis()->SetTitleOffset(1.4);
h77->GetYaxis()->SetTitleOffset(1.4);
h77->GetXaxis()->SetTitle("Position (µm)");
h77->GetYaxis()->SetTitle("Fraction of events");
h77->SetTitle("Beam X position on cell");
h77->SetFillColor(4);
h77->SetLineColor(4);
gaus->SetLineColor(6);
h77->Fit("gaus");
c1.cd(8);
scale = 1/h88->Integral();
h88->Scale(scale);
h88->Draw();
h88->GetXaxis()->SetLabelSize(0.025);
h88->GetYaxis()->SetLabelSize(0.025);
h88->GetXaxis()->SetTitleSize(0.035);
h88->GetYaxis()->SetTitleSize(0.035);
h88->GetXaxis()->SetTitleOffset(1.4);
h88->GetYaxis()->SetTitleOffset(1.4);
h88->GetXaxis()->SetTitle("Position (µm)");
h88->GetYaxis()->SetTitle("Fraction of events");
h88->SetTitle("Beam Y position on cell");
h88->SetFillColor(4);
h88->SetLineColor(4);
gaus->SetLineColor(6);
h88->Fit("gaus");
}
Reference in New Issue View Git Blame Copy Permalink