Files
geant4/examples/advanced/hadrontherapy/RootScripts/iaeaBenchmark/fragmentAngularDistribution.C
T
2016-06-09 16:15:05 +02:00

263 lines
12 KiB
C++

#include "Riostream.h"
#include "TSystem.h"
#include "TInterpreter.h"
#include "TROOT.h"
#include "TApplication.h"
#include "TFile.h"
#include "TNtuple.h"
#include "TCanvas.h"
#include "TH1F.h"
#include "THStack.h"
#include "TCut.h"
#include "TString.h"
#include "TMath.h"
/***************************
* Root script that produces a graph of the angular distribution of
* a certain type of charged fragments itneractively.
*
* Results are not stored in a histogram.
*
* This can be compared to measurements made with a square
* detector that is being moved around. Such as that of E.Haettner[1].
*
* Results are normalized to the 0-angle because documentation on E.Haettner's
* normalization is not found.
*
* @author Gillis Danielsen
* **************************/
void fragmentAngularDistribution() {
gStyle->SetOptStat(0000000000); //remove the for this graphs totally redundant statbox
gROOT->SetStyle("clearRetro");
//this will be used as base for pulling the experimental data
TString dir = gSystem->UnixPathName(gInterpreter->GetCurrentMacroName());
dir.ReplaceAll("fragmentAngularDistribution.C","");
dir.ReplaceAll("/./","/");
ifstream in;
int ZnumInt;
TString pDepth, fragment, Znum, normToOneAtZeroAngle;
cout << "Enter phantom depth (eg. 27.9, see experimentalData directory for choices): ";
cin >> pDepth;
cout << "Enter fragment Z-number (eg. 1): ";
cin >> ZnumInt;
//cout << "Enter fragment name (Znum 1 -> H,Znum 2->He...): ";
//cin >> fragment;
TString fragmentNameChoices[6] = {"H","He","Li","Be","B","C"};
TString fragment = fragmentNameChoices[ZnumInt - 1];
Znum = Form("%i",ZnumInt);
cout << "Normalize to 1 at zero angle? (Y/N): ";
cin >> normToOneAtZeroAngle;
TString experimentalDataPath = "experimentalData/iaeaBenchmark/angularDistributions/" + pDepth + "/" + fragment + "" + pDepth +".dat";
TString simulationDataPath = "IAEA_" + pDepth + ".root";
TCanvas *c1 = new TCanvas("AngularDistribution", "Angular distribution with discrete measurement annuluses");
//Pull in ascii/exfor-style data
in.open(experimentalDataPath);
Float_t f1,f2;
Int_t nlines = 0;
TFile *f = new TFile("fragmentAngularDistribution.root","RECREATE");
TNtuple *ntuple = new TNtuple("ntuple","Data from ascii file","x:y");
Char_t DATAFLAG[4];
Int_t NDATA;
Char_t n1[15], n2[15];
in >> DATAFLAG >> NDATA ; // Read EXFOR line: 'DATA 6'
in >> n1 >> n2; // Read column titles: 'Energy He B [...]'
cout <<n1<<" "<<n2<<"\n";
while (1) {
in >> f1 >> f2;
if (!in.good()) break;
if (nlines < 500 ) printf("%f %f\n",f1,f2);
ntuple->Fill(f1,f2);
nlines++;
}
std::cout << "Imported " << nlines << " lines from data-file" << endl;
//Let's pull in the simulation-data
//TFile *MCData = TFile::Open("IAEA_" + pDepth + ".root");
TFile *MCData = TFile::Open(simulationDataPath);
TNtuple *fragments = (TNtuple*) MCData->Get("fragmentNtuple");
//Block bellow pulls out the simulation's metadata from the metadata ntuple.
TNtuple *metadata = (TNtuple*) MCData->Get("metaData");
Float_t events, detectorDistance,waterThickness,beamEnergy,energyError,phantomCenterDistance;
metadata->SetBranchAddress("events",&events);
metadata->SetBranchAddress("waterThickness",&waterThickness);
metadata->SetBranchAddress("detectorDistance",&detectorDistance);
metadata->SetBranchAddress("beamEnergy",&beamEnergy);
metadata->SetBranchAddress("energyError",&energyError);
metadata->SetBranchAddress("phantomCenterDistance",&phantomCenterDistance);
metadata->GetEntry(0); //there is just one row to consider.
//good to keep for ref. G4 might give weird units due to change.
metadata->Scan();
//ALL UNITS ARE cm!
Double_t detectorSideLength = 4; //40mm, as e.haettner H1 detector
Double_t scatteringDistance = detectorDistance - phantomCenterDistance; //temporarily hard-coded, should be distance from target-center to detector
Double_t r;
Double_t degrees;
Double_t rMin;
Double_t rMax;
TString rMinString, rMaxString, experimentalNorm;
Double_t maxValue = 0.0; //When normalizing to 1 this will allways end up being 1)
int i = 0; //so that the degree steps can be varied to unevenly spaced values separate counter is used
TNtuple* distrib = new TNtuple("angularDistrib","FragmentAngularDistrib","angle:particleAmount:normalized");
std::cout << "Fragments comparison to the graphs in appendices of E.Haettner\n";
std::cout << "Scattering distance: " << scatteringDistance << " cm" << endl ;
std::cout << "(scattering distance may vary with data-files too, see haettner A.1." << endl << endl;
//This will norm it to the zero degree entry to get rid of Emma's weird normalization
//fixme detectorsidelengthstring
rMinString = "0.00";
rMaxString = Form("%f", detectorSideLength/2);
//SA of a square Double_t zeroSAsquare = 4 * TMath::ASin(pow(detectorSideLength,2.0) / (4*pow(scatteringDistance,2) + pow(detectorSideLength,2)) );
//SA with square approx squareApprox = (4*4) / (4*3.14*scatteringDistance*scatteringDistance);
//First calculates the normalization from the zero position
//Normalization by events becomes redundant but is left in place for future needs
Double_t deltaPhi = TMath::ATan((detectorSideLength/2)/scatteringDistance); //Angle where side of detector is found
/*
//Alternative normalization, here zero position is also done with annulus where rMin=0, the actual detector is a square though
//Difference with this approach and the other is very small
Double_t normEntries = fragments->GetEntries("(Z == " + Znum + " && energy > 0 && sqrt(posY^2 + posZ^2) < " + rMaxString + "&& sqrt(posY*posY + posZ*posZ) > " + rMinString + ")");
Double_t zeroSA = 2*TMath::Pi()*(TMath::Cos(0) - TMath::Cos(deltaPhi));
*/
//fragments->Scan();
//Results are normalized by a square detector mimicing H1 with center at 0 degrees.
Double_t normEntries = fragments->GetEntries("(Z == " + Znum + " && posY < " + rMaxString + " && posY > -" + rMaxString + " && posZ > -" + rMaxString + " && posZ < " + rMaxString + ")");
Double_t zeroSA = 4 * TMath::ASin(pow(detectorSideLength,2.0) / (4*pow(scatteringDistance,2) + pow(detectorSideLength,2)) );
Double_t zeroYieldNormed = normEntries / (events * zeroSA);
if(normToOneAtZeroAngle == "Y"){
Double_t zeroNorm = zeroYieldNormed; //values normalized to one at zero
}else{
Double_t zeroNorm = 1.0; //non-zeronormalized values
}
distrib->Fill(0,normEntries,zeroYieldNormed/zeroNorm); //< degrees, entyamount, normalized result for graph
//fragments->Scan(); //debug
std::cout << "Norming events: " << normEntries << endl;
//Loop through all other wanted angles, too large angles will fall outside reach of phantom window.
for(Double_t j = deltaPhi*TMath::RadToDeg(); j <= 15.0; j=j+.05){
i++;
degrees = j * TMath::DegToRad();
//Distance from straight beam at the requested angle
r = scatteringDistance * TMath::Tan(degrees);
//now the "detector is rotated around all possible perpendicularlynangle values to beamline".
//This forms an annulus with rMin and Rmax as outer and inner radiuses
//this will give a bit of approximation at small angles and at 0 degrees this gives a completely round sensor.
/*
* deltaPhi calculated so that phi+deltaphi points to one side of the detector and phi-deltaphi the other side
*
* Alternative 1: detector is moved but the normal is not pointed towards the scattering source.
* Alternative 2: detector is moved and pointed towards scattering source. (E.Haettner seems to use this)
*
* The difference in results is very minute though. (3% at largest angles)
*/
//Alternative 1
//Double_t deltaPhi = degrees - TMath::ATan(TMath::Tan(degrees) - (detectorSideLength/(2*scatteringDistance)));
//rMin = TMath::Max(0.0,r - (detectorSideLength/2));
//rMax = r + (detectorSideLength/2);
//Alternative 2
Double_t deltaPhi = TMath::ATan((TMath::Cos(degrees)*detectorSideLength)/(2*scatteringDistance));
rMin = TMath::Max(0.0,r - (detectorSideLength/(2*TMath::Cos(degrees))));
rMax = rMin + ((detectorSideLength*TMath::Sin(degrees))/TMath::Tan((TMath::Pi()/2) - degrees - deltaPhi)) + (detectorSideLength*TMath::Cos(degrees));
rMinString = Form("%f", rMin);
rMaxString = Form("%f", rMax);
/*
* From Gunzert-marx. Solid angle of annulus with rmin trmax,
* a bit of an aproximation especially at small phi.
*/
Double_t deltaOmega = 2*TMath::Pi()*(TMath::Cos(TMath::Max(0.0,degrees-deltaPhi)) - TMath::Cos(degrees+deltaPhi));
int numEntries = fragments->GetEntries("(Z == " + Znum + " && sqrt(posY^2 + posZ^2) < " + rMaxString + "&& sqrt(posY*posY + posZ*posZ) > " + rMinString + ")");
distrib->Fill(j,numEntries,numEntries/(deltaOmega * events * zeroNorm)); //< degrees, entyamount, normalized result for graph
distrib->Fill(-j,numEntries,numEntries/(deltaOmega * events * zeroNorm)); //< To get gaussian shape better visible
maxValue = TMath::Max(maxValue, numEntries/(deltaOmega * events * zeroNorm)); //< for calculation of FWHM
}
distrib->SetMarkerStyle(2); //filled dot
distrib->SetMarkerColor(kBlue);
ntuple->SetMarkerStyle(22); //triangle
ntuple->SetMarkerColor(kRed);
TH1F* dummHisto = new TH1F("dummyHisto", fragment + ", " + Form("%.1f", waterThickness) + " cm",100, -3.0,14); //Dummyhisto fix for missing TNtuple methods.
dummyHisto->SetXTitle("Angle (degrees)");
dummyHisto->SetYTitle("(N/N0) [sr^-1]");
if(normToOneAtZeroAngle == "Y"){
dummyHisto->SetMaximum(1.1);
dummyHisto->SetYTitle("[sr^-1]");
Float_t zeroPosData; //This is where we store what we norm the experimental data with
Float_t zeroPosAngle; //okay, so this should be zero, but regrettably is not allways that
ntuple->SetBranchAddress("y",&zeroPosData);
ntuple->SetBranchAddress("x",&zeroPosAngle);
int row = 0;
ntuple->GetEntry(row); //Pull the first row, usually is the right one
while(zeroPosAngle*zeroPosAngle > .01){
row++;
ntuple->GetEntry(row);
if(row == ntuple->GetEntries()){
std::cerr << "Could not find zero angle data in imported experimental data. Change normalization or relax exactness of this check." << endl;
exit();
}
}
std::cout << "For zero-position of experimental data using angle " << zeroPosAngle << " with amount " << zeroPosData << " on row " << row << endl;
experimentalNorm = Form("(1/%f)*", zeroPosData);
}else{
//nor normalization to 1 of data
dummyHisto->SetMaximum(ntuple->GetMaximum("y")+ ntuple->GetMaximum("y")*.1);
experimentalNorm = ""; //no norming of experimental resilts
}
dummyHisto->Draw();
ntuple->Draw(experimentalNorm + "y:x","","p,same");
distrib->Draw("normalized:angle","angle > -3 && angle < 14","p,same"); //similar axises to e.haettner
//Calculate closest-point-FWHM.
Float_t fwhm = 0.0, middle = 0.0, currentX, currentY;
distrib->SetBranchAddress("normalized",&currentY);
distrib->SetBranchAddress("angle",&currentX);
for(int i = 0; i < distrib->GetEntries(); i++){
distrib->GetEntry(i);
if(pow(maxValue/2 - middle, 2.0) > pow(maxValue/2 - currentY, 2.0)){
fwhm = 2*currentX;
middle = currentY;
}else{
}
}
std::cout << "Calculated (closest point) FWHM of Monte-Carlo simulation to be: " << fwhm << " degrees" << endl;
/*
* This code is left here because it allows to calcualte the values without using annuluses
* this of course is a bit more like the experimental data but statistically less precise.
for(Double_t p = 0.0;p < 14.0; p = p + 1.0){
rMinString = "0.00";
rMaxString = "2.00";
TString plusY = Form("(posY - %f)", p);
TString plusZ = Form("(posZ - %f)", p);
Double_t deltaPhi = TMath::ATan((detectorSideLength/2)/scatteringDistance);
Double_t normEntries = fragments->GetEntries("(Z == " + Znum + " && energy > 0 && sqrt(" + plusY + "^2 + " + plusZ + "^2) < " + rMaxString + "&& sqrt("+plusY + "^2 + " + plusZ + "^2) > " + rMinString + ")");
//std::cout << "(Z == " + Znum + " && energy > 0 && sqrt(" + plusY + "^2 + " + plusZ + "^2) < " + rMaxString + "&& sqrt("+plusY + "^2 + " + plusZ + "^2) > " + rMinString + ")";
Double_t zeroSA = 2*TMath::Pi()*(TMath::Cos(0) - TMath::Cos(deltaPhi));
std::cout << "with " << p << "cm the amount is " << normEntries << " / " << normEntries /(events*zeroSA) << endl;
}
*/
//c1->SaveAs("angularDistrib_depth_" + pDepth + "_Z_" + Znum + "_normedToZero_" + normToOneAtZeroAngle + "_ComparedToEHaettner.png");
pDepth.ReplaceAll(".","");
c1->SaveAs("AD_" + pDepth + "_" + Znum + "_" + normToOneAtZeroAngle + ".png");
in.close();
f->Write();
}