Gabriele Cosmo
151 lines
5.4 KiB
C++
151 lines
5.4 KiB
C++
//
|
|
// ********************************************************************
|
|
// * License and Disclaimer *
|
|
// * *
|
|
// * The Geant4 software is copyright of the Copyright Holders of *
|
|
// * the Geant4 Collaboration. It is provided under the terms and *
|
|
// * conditions of the Geant4 Software License, included in the file *
|
|
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
|
// * include a list of copyright holders. *
|
|
// * *
|
|
// * Neither the authors of this software system, nor their employing *
|
|
// * institutes,nor the agencies providing financial support for this *
|
|
// * work make any representation or warranty, express or implied, *
|
|
// * regarding this software system or assume any liability for its *
|
|
// * use. Please see the license in the file LICENSE and URL above *
|
|
// * for the full disclaimer and the limitation of liability. *
|
|
// * *
|
|
// * This code implementation is the result of the scientific and *
|
|
// * technical work of the GEANT4 collaboration. *
|
|
// * By using, copying, modifying or distributing the software (or *
|
|
// * any work based on the software) you agree to acknowledge its *
|
|
// * use in resulting scientific publications, and indicate your *
|
|
// * acceptance of all terms of the Geant4 Software license. *
|
|
// ********************************************************************
|
|
//
|
|
// $Id: DicomDetectorConstruction.hh 101301 2016-11-14 11:19:22Z gcosmo $
|
|
//
|
|
/// \file medical/DICOM/include/DicomDetectorConstruction.hh
|
|
/// \brief Definition of the DicomDetectorConstruction class
|
|
//
|
|
|
|
#ifndef DicomDetectorConstruction_h
|
|
#define DicomDetectorConstruction_h 1
|
|
|
|
#include "globals.hh"
|
|
#include "G4VUserDetectorConstruction.hh"
|
|
#include "DicomPhantomZSliceHeader.hh"
|
|
|
|
#include <set>
|
|
#include <map>
|
|
|
|
class G4Material;
|
|
class G4Box;
|
|
class G4LogicalVolume;
|
|
class DicomPhantomZSliceMerged;
|
|
|
|
//*******************************************************
|
|
/// Dicom detector construction
|
|
///
|
|
/// - Start the building of the geometry
|
|
/// - Initialisation of materials
|
|
/// - Creation of the world
|
|
/// - Reading of the DICOM data
|
|
///
|
|
/// History: 30.11.07 First version
|
|
/// \author P. Arce
|
|
//*******************************************************
|
|
|
|
struct matInfo
|
|
{
|
|
G4double fSumdens;
|
|
G4int fNvoxels;
|
|
G4int fId;
|
|
};
|
|
|
|
class DicomDetectorConstruction : public G4VUserDetectorConstruction
|
|
{
|
|
public:
|
|
|
|
DicomDetectorConstruction();
|
|
~DicomDetectorConstruction();
|
|
|
|
virtual G4VPhysicalVolume* Construct();
|
|
// trigger the construction of the geometry
|
|
|
|
protected:
|
|
void InitialisationOfMaterials();
|
|
// create the original materials
|
|
|
|
void ReadPhantomData();
|
|
void ReadPhantomDataNew();
|
|
// read the DICOM files describing the phantom
|
|
void ReadVoxelDensities( std::ifstream& fin );
|
|
|
|
void ReadPhantomDataFile(const G4String& fname);
|
|
// read one of the DICOM files describing the phantom (usually one per Z slice).
|
|
// Build a DicomPhantomZSliceHeader for each file
|
|
|
|
void MergeZSliceHeaders();
|
|
// merge the slice headers of all the files
|
|
|
|
G4Material* BuildMaterialWithChangingDensity( const G4Material* origMate,
|
|
float density, G4String newMateName );
|
|
// build a new material if the density of the voxel is different to the other voxels
|
|
|
|
void ConstructPhantomContainer();
|
|
void ConstructPhantomContainerNew();
|
|
virtual void ConstructPhantom() = 0;
|
|
// construct the phantom volumes.
|
|
// This method should be implemented for each of the derived classes
|
|
|
|
void SetScorer(G4LogicalVolume* voxel_logic);
|
|
|
|
virtual void ConstructSDandField();
|
|
|
|
protected:
|
|
G4Material* fAir;
|
|
|
|
// World ...
|
|
G4Box* fWorld_solid;
|
|
G4LogicalVolume* fWorld_logic;
|
|
G4VPhysicalVolume* fWorld_phys;
|
|
|
|
G4Box* fContainer_solid;
|
|
G4LogicalVolume* fContainer_logic;
|
|
G4VPhysicalVolume* fContainer_phys;
|
|
|
|
G4int fNoFiles; // number of DICOM files
|
|
std::vector<G4Material*> fOriginalMaterials; // list of original materials
|
|
std::vector<G4Material*> fMaterials;
|
|
// list of new materials created to distinguish different density
|
|
// voxels that have the same original materials
|
|
size_t* fMateIDs; // index of material of each voxel
|
|
//unsigned int* fMateIDs; // index of material of each voxel
|
|
|
|
std::map<G4int,G4double> fDensityDiffs;
|
|
// Density difference to distinguish material for each original material (by index)
|
|
|
|
std::vector<DicomPhantomZSliceHeader*> fZSliceHeaders;
|
|
// list of z slice header (one per DICOM files)
|
|
DicomPhantomZSliceHeader* fZSliceHeaderMerged;
|
|
// z slice header resulted from merging all z slice headers
|
|
|
|
G4int fNVoxelX, fNVoxelY, fNVoxelZ;
|
|
G4double fVoxelHalfDimX, fVoxelHalfDimY, fVoxelHalfDimZ;
|
|
G4double fMinX,fMinY,fMinZ; // minimum extension of voxels (position of wall)
|
|
G4double fMaxX,fMaxY,fMaxZ; // maximum extension of voxels (position of wall)
|
|
|
|
std::map<G4int,G4Material*> thePhantomMaterialsOriginal;
|
|
// map numberOfMaterial to G4Material. They are the list of materials as built from .geom file
|
|
|
|
DicomPhantomZSliceMerged* fMergedSlices;
|
|
|
|
std::set<G4LogicalVolume*> fScorers;
|
|
|
|
G4bool fConstructed;
|
|
};
|
|
|
|
#endif
|
|
|