Gabriele Cosmo
133 lines
5.1 KiB
C++
133 lines
5.1 KiB
C++
//
|
|
// ********************************************************************
|
|
// * License and Disclaimer *
|
|
// * *
|
|
// * The Geant4 software is copyright of the Copyright Holders of *
|
|
// * the Geant4 Collaboration. It is provided under the terms and *
|
|
// * conditions of the Geant4 Software License, included in the file *
|
|
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
|
// * include a list of copyright holders. *
|
|
// * *
|
|
// * Neither the authors of this software system, nor their employing *
|
|
// * institutes,nor the agencies providing financial support for this *
|
|
// * work make any representation or warranty, express or implied, *
|
|
// * regarding this software system or assume any liability for its *
|
|
// * use. Please see the license in the file LICENSE and URL above *
|
|
// * for the full disclaimer and the limitation of liability. *
|
|
// * *
|
|
// * This code implementation is the result of the scientific and *
|
|
// * technical work of the GEANT4 collaboration. *
|
|
// * By using, copying, modifying or distributing the software (or *
|
|
// * any work based on the software) you agree to acknowledge its *
|
|
// * use in resulting scientific publications, and indicate your *
|
|
// * acceptance of all terms of the Geant4 Software license. *
|
|
// ********************************************************************
|
|
//
|
|
#ifndef DicomFileCT_NOdcmrt__HH
|
|
#define DicomFileCT_NOdcmrt__HH
|
|
|
|
#include "DicomVFile.hh"
|
|
#include "DicomFileMgr.hh"
|
|
#include "G4ThreeVector.hh"
|
|
|
|
class DicomFileCT_NOdcmrt : public DicomVFile
|
|
{
|
|
public:
|
|
DicomFileCT_NOdcmrt();
|
|
DicomFileCT_NOdcmrt(DcmDataset* dset);
|
|
~DicomFileCT_NOdcmrt(){};
|
|
|
|
public:
|
|
virtual void ReadData();
|
|
|
|
void operator+=( const DicomFileCT_NOdcmrt& rhs );
|
|
DicomFileCT_NOdcmrt operator+( const DicomFileCT_NOdcmrt& rhs );
|
|
// add two slices that have the same dimensions, merging them in Z
|
|
|
|
void BuildMaterials();
|
|
void DumpHeaderToTextFile(std::ofstream& fout);
|
|
void DumpMateIDsToTextFile(std::ofstream& fout);
|
|
void DumpDensitiesToTextFile(std::ofstream& fout);
|
|
void BuildStructureIDs();
|
|
void DumpStructureIDsToTextFile(std::ofstream& fout);
|
|
|
|
// Get and set methods
|
|
G4int GetNoVoxelX() const { return fNoVoxelX; };
|
|
G4int GetNoVoxelY() const { return fNoVoxelY; };
|
|
G4int GetNoVoxelZ() const { return fNoVoxelZ; };
|
|
G4int GetNoVoxels() const { return fNoVoxelX*fNoVoxelY*fNoVoxelZ; };
|
|
|
|
G4double GetMinX() const { return fMinX; };
|
|
G4double GetMinY() const { return fMinY; };
|
|
G4double GetMinZ() const { return fMinZ; };
|
|
G4double GetMaxX() const { return fMaxX; };
|
|
G4double GetMaxY() const { return fMaxY; };
|
|
G4double GetMaxZ() const { return fMaxZ; };
|
|
|
|
void SetNoVoxelX(const G4int& val) { fNoVoxelX = val; }
|
|
void SetNoVoxelY(const G4int& val) { fNoVoxelY = val; }
|
|
void SetNoVoxelZ(const G4int& val) { fNoVoxelZ = val; }
|
|
|
|
void SetMinX(const G4double& val) { fMinX = val; };
|
|
void SetMaxX(const G4double& val) { fMaxX = val; };
|
|
void SetMinY(const G4double& val) { fMinY = val; };
|
|
void SetMaxY(const G4double& val) { fMaxY = val; };
|
|
void SetMinZ(const G4double& val) { fMinZ = val; };
|
|
void SetMaxZ(const G4double& val) { fMaxZ = val; };
|
|
|
|
const G4double& GetLocation() const { return fLocation; }
|
|
|
|
void SetLocation(const G4double& val) { fLocation = val; }
|
|
|
|
G4ThreeVector GetOrientationRows() const { return fOrientationRows; }
|
|
G4ThreeVector GetOrientationColumns() const { return fOrientationColumns; }
|
|
|
|
void DumpToTextFile();
|
|
void DumpToBinaryFile();
|
|
|
|
void ReadDataFromFile();
|
|
|
|
private:
|
|
template <typename T> inline bool CheckConsistency(const T&, const T&, G4String);
|
|
|
|
void ReadPixelData();
|
|
void Print( std::ostream& out );
|
|
|
|
private:
|
|
G4double fLocation;
|
|
G4double fBitAllocated;
|
|
G4double fRescaleSlope;
|
|
G4double fRescaleIntercept;
|
|
|
|
G4int fNoVoxelX, fNoVoxelY, fNoVoxelZ; // number of voxels in each dimensions
|
|
G4double fMinX,fMinY,fMinZ; // minimum extension of voxels (position of wall)
|
|
G4double fMaxX,fMaxY,fMaxZ; // maximum extension of voxels (position of wall)
|
|
G4double fVoxelDimX,fVoxelDimY,fVoxelDimZ; // maximum extension of voxels (position of wall)
|
|
|
|
G4ThreeVector fOrientationRows;
|
|
G4ThreeVector fOrientationColumns;
|
|
|
|
std::vector<int> fHounsfieldV;
|
|
std::vector<size_t> fMateIDs;
|
|
std::vector<G4double> fDensities;
|
|
std::vector<G4int> fStructure;
|
|
// G4int* fStructure;
|
|
|
|
DicomFileMgr* theFileMgr;
|
|
};
|
|
|
|
//============================================================================
|
|
template <typename T>
|
|
inline bool DicomFileCT_NOdcmrt::CheckConsistency(const T& val1, const T& val2,
|
|
G4String category) {
|
|
if(val1 != val2) {
|
|
G4Exception("DicomFileCT_NOdcmrtr::CheckConsistency",
|
|
"Consistency Mismatch : Keeping previous value if nonzero",
|
|
JustWarning, category.c_str());
|
|
return false;
|
|
}
|
|
return true;
|
|
}
|
|
|
|
#endif
|