Gabriele Cosmo
120 lines
4.2 KiB
C++
120 lines
4.2 KiB
C++
//
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// ********************************************************************
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// * License and Disclaimer *
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// * *
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// * The Geant4 software is copyright of the Copyright Holders of *
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// * the Geant4 Collaboration. It is provided under the terms and *
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// * conditions of the Geant4 Software License, included in the file *
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// * LICENSE and available at http://cern.ch/geant4/license . These *
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// * include a list of copyright holders. *
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// * *
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// * Neither the authors of this software system, nor their employing *
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// * institutes,nor the agencies providing financial support for this *
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// * work make any representation or warranty, express or implied, *
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// * regarding this software system or assume any liability for its *
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// * use. Please see the license in the file LICENSE and URL above *
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// * for the full disclaimer and the limitation of liability. *
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// * *
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// * This code implementation is the result of the scientific and *
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// * technical work of the GEANT4 collaboration. *
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// * By using, copying, modifying or distributing the software (or *
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// * any work based on the software) you agree to acknowledge its *
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// * use in resulting scientific publications, and indicate your *
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// * acceptance of all terms of the Geant4 Software license. *
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// ********************************************************************
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//
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//
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//
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/// \file TLKModel.hh
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/// \brief Definition of the TLKModel class
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#ifndef TLKMODEL_HH
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#define TLKMODEL_HH
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//#include <boost/numeric/odeint.hpp>
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#include <vector>
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#include <string>
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class Damage;
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class TLKModel
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{
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public:
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/// \brief constructor
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TLKModel(double pLambda1 =-1,double pLambda2=-1, double pBeta1=-1, double pBeta2=-1,double pEta=-1);
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/// \brief destructor
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~TLKModel() = default;
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double GetLambda1(){return fLambda1;};
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void SetLambda1(double pVal){fLambda1 = pVal;};
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double GetLambda2(){return fLambda2;};
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void SetLambda2(double pVal){fLambda2 = pVal;};
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double GetBeta1(){return fBeta1;};
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void SetBeta1(double pVal){fBeta1 = pVal;};
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double GetBeta2(){return fBeta2;};
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void SetBeta2(double pVal){fBeta2 = pVal;};
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double GetEta(){return fEta;};
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void SetEta(double pVal){fEta = pVal;};
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double GetSingleDSBYield(){return fSingleDSBYield;};
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void SetSingleDSBYield(double pVal){fSingleDSBYield = pVal;};
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double GetComplexDSBYield(){return fComplexDSBYield;};
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void SetComplexDSBYield(double pVal){fComplexDSBYield = pVal;};
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unsigned int GetBpForDSB(){return fBpForDSB;};
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void SetBpForDSB(unsigned int pVal){fBpForDSB = pVal;};
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double GetStartTime(){return fStartTime;};
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void SetStartTime(double pVal){fStartTime = pVal;};
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double GetStopTime(){return fStopTime;};
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void SetStopTime(double pVal){fStopTime = pVal;};
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double GetStepTime(){return fStepTime;};
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void SetStepTime(double pVal){fStepTime = pVal;};
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// Compute damage inputs required by TLK model
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void ComputeAndSetDamageInput(std::vector<Damage>);
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// Compute SF for a given absorbed dose expressed in Gy
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double ComputeSF(double pDose);
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// Compute a SF Curve
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void CalculateRepair(double pDoseMax, double pDeltaDose);
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// Write output, dose expressed in Gy
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void WriteOutput(std::string pFileName);
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void SetDose(double d) {fDose = d;}
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private:
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std::vector<double> TLK_odes_system(double t,std::vector<double> y);
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// TLK parameters
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// simple DSB repair probability (h-1)
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double fLambda1{0};
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// complex DSB repair probability (h-1)
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double fLambda2{0};
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// simple DSB misrepair probability (h-1)
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double fBeta1{0};
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// complex DSB misrepair probability (h-1)
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double fBeta2{0};
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// binary misrepair probability (h-1)
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double fEta{0};
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// DSB Yields in Gy-1
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double fSingleDSBYield{0};
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double fComplexDSBYield{0};
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// num of bp to consider a DSB for the MakeCluster function
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// default value is 10
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unsigned int fBpForDSB{10};
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// Time for integration
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double fStartTime{0};
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double fStopTime{0};
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double fStepTime{0};
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// SF curve
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std::vector<std::pair<double,double>> fSFCurve;
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// store dose deposited in nucleus cell
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double fDose{0};
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};
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#endif |