Gabriele Cosmo
86 lines
3.1 KiB
C++
86 lines
3.1 KiB
C++
//
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// ********************************************************************
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// * License and Disclaimer *
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// * *
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// * The Geant4 software is copyright of the Copyright Holders of *
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// * the Geant4 Collaboration. It is provided under the terms and *
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// * conditions of the Geant4 Software License, included in the file *
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// * LICENSE and available at http://cern.ch/geant4/license . These *
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// * include a list of copyright holders. *
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// * *
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// * Neither the authors of this software system, nor their employing *
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// * institutes,nor the agencies providing financial support for this *
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// * work make any representation or warranty, express or implied, *
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// * regarding this software system or assume any liability for its *
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// * use. Please see the license in the file LICENSE and URL above *
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// * for the full disclaimer and the limitation of liability. *
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// * *
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// * This code implementation is the result of the scientific and *
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// * technical work of the GEANT4 collaboration. *
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// * By using, copying, modifying or distributing the software (or *
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// * any work based on the software) you agree to acknowledge its *
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// * use in resulting scientific publications, and indicate your *
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// * acceptance of all terms of the Geant4 Software license. *
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// ********************************************************************
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//
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// Authors: O. Belov and M. Batmunkh
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// January 2017
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// last edit: L.T. Anh (2023)
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/// \file BelovModel.hh
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/// \brief Definition of the BelovModel class
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#ifndef BelovModel_H
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#define BelovModel_H 1
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#include <iostream>
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#include <fstream>
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#include <vector>
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#include <map>
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class Damage;
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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class BelovModel
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{
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public:
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BelovModel();
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void Initialize();
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bool CalculateRepair(double Dz);
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void SetAlpha(double value){falpha=value;};
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void SetNirrep(double value){fNirrep=value;};
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virtual
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~BelovModel() = default;
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//Computes and sets input damage parameters
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void ComputeAndSetDamageInput(std::vector<Damage>);
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std::vector<std::pair<double,double>> GetDNARepair(std::string NameFoci);
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void WriteOutput(std::string pFileName);
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unsigned int GetBpForDSB(){return fBpForDSB;};
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void SetBpForDSB(unsigned int pVal){fBpForDSB = pVal;};
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void SetDose(double d) {fDose = d;}
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void SetDSBandComDSBandDose(double dsby,double cdsby,double d);
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private:
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double fDz;
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double falpha;
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double fNirrep;
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double fTime;
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double ComplexDSBYield;
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double DSBYield;
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std::vector<double> Belov_odes_system(double t,std::vector<double> y);
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std::vector<std::pair<double,double>> frepairsim[5];
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std::map<std::string,std::vector<std::pair<double,double>>> fdnarepair;
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// num of bp to consider a DSB for the MakeCluster function
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// default value is 10
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unsigned int fBpForDSB;
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// store dose deposited in nucleus cell
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double fDose;
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};
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#endif
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