Gabriele Cosmo
93 lines
4.1 KiB
C++
93 lines
4.1 KiB
C++
//
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// ********************************************************************
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// * License and Disclaimer *
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// * *
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// * The Geant4 software is copyright of the Copyright Holders of *
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// * the Geant4 Collaboration. It is provided under the terms and *
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// * conditions of the Geant4 Software License, included in the file *
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// * LICENSE and available at http://cern.ch/geant4/license . These *
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// * include a list of copyright holders. *
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// * *
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// * Neither the authors of this software system, nor their employing *
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// * institutes,nor the agencies providing financial support for this *
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// * work make any representation or warranty, express or implied, *
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// * regarding this software system or assume any liability for its *
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// * use. Please see the license in the file LICENSE and URL above *
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// * for the full disclaimer and the limitation of liability. *
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// * *
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// * This code implementation is the result of the scientific and *
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// * technical work of the GEANT4 collaboration. *
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// * By using, copying, modifying or distributing the software (or *
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// * any work based on the software) you agree to acknowledge its *
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// * use in resulting scientific publications, and indicate your *
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// * acceptance of all terms of the Geant4 Software license. *
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// ********************************************************************
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//
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//
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//
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/// \file AnalysisHandler.hh
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/// \brief Definition of the AnalysisHandler class
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#ifndef AnalysisHandler_h
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#define AnalysisHandler_h 1
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#include <memory>
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#include "ScanDamage.hh"
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#include "TLKModel.hh"
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#include "LEMIVModel.hh"
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#include "BelovModel.hh"
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class AnalysisHandler
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{
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public:
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AnalysisHandler(/* args */);
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~AnalysisHandler() = default;
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void SetThresholdEnergy(double e);
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void GetAllDamageAndScanSB();
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void GiveMeSBs();
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void ApplyDNAModel(const std::string dnamodel);
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void SetBpForDSB(unsigned int pVal);
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void SetParametersForTLKModel(double pLambda1 = 3.0,double pLambda2=0.03,
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double pBeta1=0.01, double pBeta2=0.06,double pEta=0.002);
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void SetParametersForLEMIVModel(double pLoopLength=2e6,double pFunrej=0,
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double pTfast=0.24,double pTslow=2.81);
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void CreateSDD(std::string filename);
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private:
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///void GetDoseFromEdep();
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std::unique_ptr<ScanDamage> fScanDamage;
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std::unique_ptr<TLKModel> fTLKModel;
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std::unique_ptr<LEMIVModel> fLEMIVModel;
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std::unique_ptr<BelovModel> fBelovModel;
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std::vector<Damage> fAllDamage;
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std::pair<float,float> fNsDSBandError = {0,0};
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std::pair<float,float> fNcDSBandError = {0,0};
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std::pair<float,float> fNDSBandError = {0,0};
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std::pair<float,float> fNDSBdirandError = {0,0}; // DSB has contribution from at least one direct damage
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std::pair<float,float> fNDSBIndandError = {0,0}; // DSB has contribution from at least one indirect damage
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std::pair<float,float> fNDSBdirIandError = {0,0}; // DSB has contribution from both direct and indirect damage
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std::pair<float,float> fNSSBandError = {0,0};
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std::pair<float,float> fNSBandError = {0,0};
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std::pair<float,float> fNdirSBandError = {0,0};
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std::pair<float,float> fNindirSBandError = {0,0};
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bool fIsSBScanned = false;
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// num of bp to consider a DSB for the MakeCluster function
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// default value is 10
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unsigned int fBpForDSB{10};
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// store dose deposited in nucleus cell
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double fDose{0};
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//TLK: Compute a SF Curve
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double pTLKDoseMax{0}, pTLKDeltaDose{0};
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//LEMIV: compute fraction of unrejoined DSB up to pLEMIVTimeMax (h) and pLEMIVDeltaTime steps
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double pLEMIVtimeMax{0}, pLEMIVdeltaTime{0};
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double fNBp{0};// number of base pairs
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double fEdepInNucleus{0}; // eV
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double fNucleusVolume{0};
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std::map<int,unsigned long long int> fChromosomeBpMap; //Store number of Bp in each Chomosomes;
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};
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#endif
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