Gabriele Cosmo
183 lines
6.2 KiB
C++
183 lines
6.2 KiB
C++
//
|
|
// ********************************************************************
|
|
// * License and Disclaimer *
|
|
// * *
|
|
// * The Geant4 software is copyright of the Copyright Holders of *
|
|
// * the Geant4 Collaboration. It is provided under the terms and *
|
|
// * conditions of the Geant4 Software License, included in the file *
|
|
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
|
// * include a list of copyright holders. *
|
|
// * *
|
|
// * Neither the authors of this software system, nor their employing *
|
|
// * institutes,nor the agencies providing financial support for this *
|
|
// * work make any representation or warranty, express or implied, *
|
|
// * regarding this software system or assume any liability for its *
|
|
// * use. Please see the license in the file LICENSE and URL above *
|
|
// * for the full disclaimer and the limitation of liability. *
|
|
// * *
|
|
// * This code implementation is the result of the scientific and *
|
|
// * technical work of the GEANT4 collaboration. *
|
|
// * By using, copying, modifying or distributing the software (or *
|
|
// * any work based on the software) you agree to acknowledge its *
|
|
// * use in resulting scientific publications, and indicate your *
|
|
// * acceptance of all terms of the Geant4 Software license. *
|
|
// ********************************************************************
|
|
//
|
|
// Hadrontherapy advanced example for Geant4
|
|
// See more at: https://twiki.cern.ch/twiki/bin/view/Geant4/AdvancedExamplesHadrontherapy
|
|
|
|
#ifndef HadrontherapyMatrix_H
|
|
#define HadrontherapyMatrix_H 1
|
|
#include <G4ParticleDefinition.hh>
|
|
#include "globals.hh"
|
|
#include <vector>
|
|
#include <fstream>
|
|
//#include "g4csv.hh"
|
|
|
|
|
|
#ifndef HADRONTHERAPYANALYSISMANAGER_HH
|
|
#define HADRONTHERAPYANALYSISMANAGER_HH 1
|
|
|
|
class HadrontherapyAnalysisFileMessenger;
|
|
|
|
/**
|
|
* A class for connecting the simulation to an analysis package.
|
|
*/
|
|
class HadrontherapyAnalysis
|
|
{
|
|
private:
|
|
/**
|
|
* Analysis manager is a singleton object (there is only one instance).
|
|
* The pointer to this object is available through the use of the method GetInstance();
|
|
*
|
|
* @see GetInstance
|
|
*/
|
|
HadrontherapyAnalysis();
|
|
|
|
|
|
|
|
public:
|
|
~HadrontherapyAnalysis();
|
|
|
|
/**
|
|
* Get the pointer to the analysis manager.
|
|
*/
|
|
static HadrontherapyAnalysis* GetInstance();
|
|
|
|
|
|
|
|
static HadrontherapyAnalysis* instance;
|
|
HadrontherapyAnalysisFileMessenger* fMess;
|
|
|
|
};
|
|
|
|
#endif
|
|
|
|
// The information: energy deposit and position in the phantom
|
|
// is stored in a matrix
|
|
|
|
// type struct useful to store nucludes data
|
|
|
|
|
|
struct ion
|
|
{
|
|
G4bool isPrimary; // true if particle is primary
|
|
G4int PDGencoding; // Particle data group id for the particle
|
|
//G4String extName; // AZ[excitation energy]: like He3[1277.4], He4[0.0], Li7[231.4], ...
|
|
G4String name; // simple name without excitation energy: He3, He4, Li7, ...
|
|
std::string::size_type len; // name length
|
|
G4int Z; // atomic number
|
|
G4int A; // mass number
|
|
G4double *dose; // pointer to dose matrix
|
|
unsigned int *fluence; // pointer to fluence matrix
|
|
//friend G4bool operator<(const ion& a, const ion& b) {return (a.Z == b.Z) ? b.A < a.A : b.Z < a.Z ;}
|
|
G4bool operator<(const ion& a) const{return (this->Z == a.Z) ? this-> A < a.A : this->Z < a.Z ;}
|
|
};
|
|
|
|
class HadrontherapyMatrix
|
|
{
|
|
private:
|
|
HadrontherapyMatrix(G4int numberOfVoxelAlongX,
|
|
G4int numberOfVoxelAlongY,
|
|
G4int numberOfVoxelAlongZ,
|
|
G4double massOfVoxel); //< this is supposed to be a singleton
|
|
|
|
|
|
public:
|
|
|
|
~HadrontherapyMatrix();
|
|
// Get object instance only
|
|
static HadrontherapyMatrix* GetInstance();
|
|
// Make & Get instance
|
|
static HadrontherapyMatrix* GetInstance(G4int nX, G4int nY, G4int nZ, G4double mass);
|
|
|
|
static G4bool secondary;
|
|
// Full list of generated nuclides
|
|
|
|
|
|
void PrintNuclides();
|
|
// Hit array marker (useful to avoid multiple counts of fluence)
|
|
void ClearHitTrack();
|
|
G4int* GetHitTrack(G4int i, G4int j, G4int k);
|
|
|
|
// All the elements of the matrix are initialised to zero
|
|
void Initialize();
|
|
void Clear();
|
|
// Fill DOSE/fluence matrix for particle:
|
|
// if fluence parameter is true then fluence at voxel (i, j, k) is increased
|
|
// else energyDeposit fill the dose matrix for voxel (i,j,k)
|
|
G4bool Fill(G4int, G4ParticleDefinition* particleDef, G4int i, G4int j, G4int k, G4double energyDeposit, G4bool fluence=false);
|
|
|
|
// Fill TOTAL DOSE matrix for primary particles only
|
|
void Fill(G4int i, G4int j, G4int k, G4double energyDeposit);
|
|
// The matrix is filled with the energy deposit
|
|
// in the element corresponding to the voxel of the phantom where
|
|
// the energy deposit was registered
|
|
|
|
// Store the information of the matrix in a ntuple and in
|
|
// a 1D Histogram
|
|
//void TotalEnergyDeposit();
|
|
|
|
// Store single matrix data to filename
|
|
void StoreMatrix(G4String file, void* data,size_t psize);
|
|
// Store all fluence data to filenames
|
|
void StoreFluenceData();
|
|
// Store all dose data to filenames
|
|
void StoreDoseData();
|
|
|
|
// Store all data (except the total dose) to ONE filename
|
|
void StoreDoseFluenceAscii(G4String filename = "");
|
|
|
|
|
|
|
|
inline G4int Index(G4int i, G4int j, G4int k) { return (i * numberOfVoxelAlongY + j) * numberOfVoxelAlongZ + k; }
|
|
// Get a unique index from a three dimensional one
|
|
|
|
G4double * GetMatrix(){return matrix;}
|
|
|
|
G4int GetNvoxel(){return numberOfVoxelAlongX*numberOfVoxelAlongY*numberOfVoxelAlongZ;}
|
|
// Total number of voxels read only access
|
|
G4int GetNumberOfVoxelAlongX(){return numberOfVoxelAlongX;}
|
|
G4int GetNumberOfVoxelAlongY(){return numberOfVoxelAlongY;}
|
|
G4int GetNumberOfVoxelAlongZ(){return numberOfVoxelAlongZ;}
|
|
private:
|
|
|
|
static HadrontherapyMatrix* instance;
|
|
G4int numberOfVoxelAlongX;
|
|
G4int numberOfVoxelAlongY;
|
|
G4int numberOfVoxelAlongZ;
|
|
G4double massOfVoxel;
|
|
|
|
G4double* matrix;
|
|
G4int* hitTrack;
|
|
G4String stdFile, filename;
|
|
std::ofstream ofs;
|
|
|
|
// Dose&fluence data store
|
|
std::vector <ion> ionStore;
|
|
// want secondary particles?
|
|
G4double doseUnit;
|
|
};
|
|
#endif
|
|
|