Gabriele Cosmo
138 lines
4.4 KiB
C++
138 lines
4.4 KiB
C++
//
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// ********************************************************************
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// * License and Disclaimer *
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// * *
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// * The Geant4 software is copyright of the Copyright Holders of *
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// * the Geant4 Collaboration. It is provided under the terms and *
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// * conditions of the Geant4 Software License, included in the file *
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// * LICENSE and available at http://cern.ch/geant4/license . These *
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// * include a list of copyright holders. *
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// * *
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// * Neither the authors of this software system, nor their employing *
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// * institutes,nor the agencies providing financial support for this *
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// * work make any representation or warranty, express or implied, *
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// * regarding this software system or assume any liability for its *
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// * use. Please see the license in the file LICENSE and URL above *
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// * for the full disclaimer and the limitation of liability. *
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// * *
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// * This code implementation is the result of the scientific and *
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// * technical work of the GEANT4 collaboration. *
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// * By using, copying, modifying or distributing the software (or *
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// * any work based on the software) you agree to acknowledge its *
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// * use in resulting scientific publications, and indicate your *
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// * acceptance of all terms of the Geant4 Software license. *
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// ********************************************************************
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//
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/// \file PhysGeoImport.hh
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/// \brief Definition of the PhysGeoImport class
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///
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/// Definition of the plasmid load methods for the geometry
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// Authors: S. Meylan and C. Villagrasa (IRSN, France)
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// Update: H. Tran (IRSN, France) :20/12/2018
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// J. Naoki D. Kondo (UCSF, US): 10/10/2021
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//
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#ifndef DNADAMAGE2_GeoImport_h
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#define DNADAMAGE2_GeoImport_h 1
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#include "G4Box.hh"
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#include "G4Electron_aq.hh"
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#include "G4H2O.hh"
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#include "G4LogicalVolume.hh"
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#include "G4NistManager.hh"
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#include "G4Orb.hh"
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#include "G4PVPlacement.hh"
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#include "G4String.hh"
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#include "G4SubtractionSolid.hh"
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#include "G4SystemOfUnits.hh"
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#include "G4ThreeVector.hh"
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#include "G4VSolid.hh"
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#include "G4VisAttributes.hh"
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#include <algorithm>
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#include <fstream>
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#include <map>
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#include <memory>
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class G4VPhysicalVolume;
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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struct Molecule
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{
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Molecule(G4String name, G4int copyNumber, G4ThreeVector position, G4double radius,
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G4double waterRadius, std::string material, G4int strand)
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{
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fName = name;
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fMaterial = material;
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fCopyNumber = copyNumber;
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fPosition = position;
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fRadius = radius;
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fRadiusWater = waterRadius;
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fStrand = strand;
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}
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G4String fName = "none";
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G4String fMaterial = "none";
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G4int fCopyNumber = -1;
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G4int fStrand = -1;
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G4ThreeVector fPosition = G4ThreeVector();
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G4double fRadius = 1;
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G4double fRadiusWater = 1;
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};
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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class PhysGeoImport
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{
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public:
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PhysGeoImport();
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~PhysGeoImport() = default;
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G4LogicalVolume* CreateLogicVolumeXYZ(G4String fileName);
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std::vector<G4String> GetMoleculesNames() { return fSampleDNANames; }
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std::vector<G4ThreeVector> GetMoleculesPositions() { return fSampleDNAPositions; }
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std::vector<std::vector<G4int>> GetMoleculesDetails() { return fSampleDNADetails; }
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private:
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std::string fGeoName = "VoxelStraight";
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std::map<G4String, G4double> fRadiusMap;
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std::map<G4String, G4double> fWaterRadiusMap;
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std::vector<Molecule> fMolecules;
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// Materials
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G4Material* fpWater = nullptr;
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G4Material* fEnvelopeWater = nullptr;
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void ReadFile(G4String fileName);
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G4double fOffsetX = 0;
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G4double fOffsetY = 0;
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G4double fOffsetZ = 0;
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G4double fXMin = 1000;
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G4double fXMax = -1000;
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G4double fYMin = 1000;
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G4double fYMax = -1000;
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G4double fZMin = 1000;
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G4double fZMax = -1000;
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std::ofstream fOutDNA;
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std::vector<G4ThreeVector> fVertexes;
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std::vector<G4String> fSampleDNANames;
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std::vector<G4ThreeVector> fSampleDNAPositions;
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std::vector<std::vector<G4int>> fSampleDNADetails;
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};
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//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
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#endif
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