93 lines
3.5 KiB
C++
93 lines
3.5 KiB
C++
//
|
|
// ********************************************************************
|
|
// * License and Disclaimer *
|
|
// * *
|
|
// * The Geant4 software is copyright of the Copyright Holders of *
|
|
// * the Geant4 Collaboration. It is provided under the terms and *
|
|
// * conditions of the Geant4 Software License, included in the file *
|
|
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
|
// * include a list of copyright holders. *
|
|
// * *
|
|
// * Neither the authors of this software system, nor their employing *
|
|
// * institutes,nor the agencies providing financial support for this *
|
|
// * work make any representation or warranty, express or implied, *
|
|
// * regarding this software system or assume any liability for its *
|
|
// * use. Please see the license in the file LICENSE and URL above *
|
|
// * for the full disclaimer and the limitation of liability. *
|
|
// * *
|
|
// * This code implementation is the result of the scientific and *
|
|
// * technical work of the GEANT4 collaboration. *
|
|
// * By using, copying, modifying or distributing the software (or *
|
|
// * any work based on the software) you agree to acknowledge its *
|
|
// * use in resulting scientific publications, and indicate your *
|
|
// * acceptance of all terms of the Geant4 Software license. *
|
|
// ********************************************************************
|
|
//
|
|
//
|
|
/// file: RodChromosome.hh
|
|
/// brief: declaration file for a rod-shaped chromosome model.
|
|
|
|
#ifndef MOLECULAR_ROD_CHROMOSOME_HH
|
|
#define MOLECULAR_ROD_CHROMOSOME_HH
|
|
|
|
#include "VirtualChromosome.hh"
|
|
|
|
#include "G4RotationMatrix.hh"
|
|
#include "G4ThreeVector.hh"
|
|
#include "globals.hh"
|
|
|
|
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
|
|
|
|
class RodChromosome : public VirtualChromosome
|
|
{
|
|
public:
|
|
explicit RodChromosome(const G4String&, const G4ThreeVector&, const G4double&, const G4double&);
|
|
|
|
explicit RodChromosome(const G4String&, const G4ThreeVector&, const G4double&, const G4double&,
|
|
const G4RotationMatrix&);
|
|
|
|
~RodChromosome() override;
|
|
|
|
bool PointInChromosome(G4ThreeVector const& position) override;
|
|
|
|
G4ThreeVector RandomPointInChromosome() override;
|
|
|
|
G4String GetShape() override { return fShape; };
|
|
static const G4String fShape;
|
|
|
|
void Print() override
|
|
{
|
|
G4cout << "type: " << fShape << G4endl;
|
|
G4cout << "radius: " << fRadius << G4endl;
|
|
G4cout << "height: " << fHeight << G4endl;
|
|
G4cout << "center: " << fCenter << G4endl;
|
|
G4cout << "rotation: " << fRotation.getPhi() << " " << fRotation.getTheta() << " "
|
|
<< fRotation.getPhi() << G4endl;
|
|
}
|
|
|
|
void SetRotation(const G4RotationMatrix& rot)
|
|
{
|
|
fRotation = rot;
|
|
fInverseRotation = fRotation.inverse();
|
|
};
|
|
|
|
G4RotationMatrix GetRotation() const { return fRotation; };
|
|
|
|
G4ThreeVector GetPosition() const { return fCenter; };
|
|
|
|
G4double GetRadius() const { return fRadius; };
|
|
|
|
G4double GetHeight() const { return fHeight; };
|
|
|
|
protected:
|
|
private:
|
|
G4ThreeVector fCenter;
|
|
G4double fRadius;
|
|
G4double fHeight;
|
|
G4RotationMatrix fRotation, fInverseRotation;
|
|
};
|
|
|
|
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
|
|
|
|
#endif // MOLECULAR_ROD_CHROMOSOME_HH
|