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/// \file ChemGeoImporthh
/// \brief Definition of the ChemGeoImport class

#ifndef ChemGeoImport_HH
#define ChemGeoImport_HH

#include <map>
#include <fstream>
#include <algorithm>
#include <set>

#include "G4String.hh"
#include "G4ThreeVector.hh"
#include "G4Orb.hh"
#include "G4VSolid.hh"
#include "G4Box.hh"
#include "G4SystemOfUnits.hh"
#include "G4SubtractionSolid.hh"
#include "G4LogicalVolume.hh"
#include "G4PVPlacement.hh"
#include "G4NistManager.hh"
#include "G4VisAttributes.hh"
#include "G4H2O.hh"
#include "G4Electron_aq.hh"
#include "G4Scheduler.hh"

#include "UserMoleculeGun.hh"

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......

struct ChemMolecule
{
    ChemMolecule(G4String name, G4int copyNumber, G4ThreeVector position,
                G4int strand, G4int state, G4int electronicLevel, G4int trackId)
    {
        fName = name;
        fCopyNumber = copyNumber;
        fPosition = position;
        fStrand = strand;
        fState = state;
        fElectronicLevel = electronicLevel;
        fTrackId = trackId;
    }

    ~ChemMolecule() {}

    G4String fName{""};

    G4int fCopyNumber{-1};
    G4int fStrand{-1};
    G4int fState{-99};
    G4int fElectronicLevel{-99};
    G4int fTrackId{-1};

    G4ThreeVector fPosition{0};

    friend G4bool operator==(const ChemMolecule& lhs, const ChemMolecule& rhs)
    {
        return (lhs.fName == rhs.fName
                && lhs.fCopyNumber == rhs.fCopyNumber
                && lhs.fStrand == rhs.fStrand
                && lhs.fState == rhs.fState
                && lhs.fElectronicLevel == rhs.fElectronicLevel
                && lhs.fTrackId == rhs.fTrackId);
    }
};

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......

class ChemGeoImport
{
public:
    ChemGeoImport();
    ~ChemGeoImport();

    void SetFactor(double factor){fFactor=factor;}
    G4double GetFactor() const {return fFactor;}

    G4double GetSize() const {return fSize;}

    void ParseFiles(const G4String& chemInputFile);

    // This method will trigger the build of the geometry
    void InsertMoleculeInWorld();

    void Reset();
    G4String GetVoxelDefFilePath(G4String bareName);
    G4bool IsFileParsed() {return fIsParsed;}
private:
    G4bool fIsParsed{false};

    // Factor to scale the geometry
    G4double fFactor{1};

    G4double fSize{0};

    G4String fGeoNameFromChemInput{""};

    // Vector to contain all the molecule structures listed within the imput file
    std::vector<ChemMolecule> fMolecules;

    std::vector<ChemMolecule> fToBeRemovedMol;

    UserMoleculeGun* fpGun{nullptr};

    void ParseChemInputFile(const G4String& fileName);
    void ParseGeoFile(const G4String& fileName);
    G4bool IsMoleculeInTheRemoveTable(const ChemMolecule& molecule);

    void GetVoxelDefFilePathList();
    std::set<G4String> fVoxelDefFilesList;
};

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......

#endif // ChemGeoImport_HH