# G.A.P.Cirrone
# cirrone@lns.infn.it
#
# Macro file recommended for the use with proton beams and built-in physic list.
# This macro uses the physics list already contained in the Geant4 distribution
# 
#    The 'Reference Physics Lists' can be activated setting a specific enviroment variable to the name
#    of the physics. For example if the QGSP_BIC Reference Physics Lists must be activated the User 
#    must set export PHYSLIST=QGSP_BIC (or setenv PHYSLIST QGSP_BIC).
#    A 'Reference Physics Lists' contains all the physics process necessary to a particle transport
#    If the User set the PHYSLIST variable Hadrontherapy will start with the defaultMacroWithReferencePhysicsList.mac
#    macro. See this macro file for more details

#########################
# Set of the verboses 
#
/control/verbose 1
/tracking/verbose 0
/run/verbose 1
/event/verbose 0

##########################
# Set of the physic models
#
/Physics/addPhysics QGSP_BIC_EMY


##########################
# Initialisation procedure
#
/run/initialize

#########################
# Set the primary particle type,
# energy and position along the X direction
#
/gun/particle proton

/beam/energy/meanEnergy 63 MeV
/beam/energy/sigmaEnergy 400 keV
/beam/position/Xposition -2600 mm


#/beamLine/RangeShifter/RSMat G4_PLEXIGLASS
#/beamLine/RangeShifter/thickness 13 mm
/beamLine/FinalCollimator/halfInnerRad 12.5 mm

##########################
# Set here the cut and the step max for the tracking. 
# Suggested values of cut and step:
#

# Set cuts ONLY inside detector
/Physics/setDetectorCuts 0.01 mm

# Set cuts outside detector 
/Physics/setCuts 1 m

/Step/waterPhantomStepMax 0.01 mm 

#########################
# Visualisation 
#
/vis/scene/create
/vis/open OGL
/vis/viewer/flush
/vis/viewer/set/viewpointThetaPhi 30 140 deg
/vis/viewer/zoomTo 1
#/vis/viewer/panTo 100  20 cm
/vis/viewer/panTo -10  0 cm
/vis/scene/add/trajectories
/tracking/storeTrajectory 1
/vis/scene/endOfEventAction accumulate -1
/vis/viewer/update



#########################
# Display the event number
# during the run
# 
/event/printEventNumber 100


# Default material is liquid water (G4_WATER)
#/changePhantom/material G4_Pb

# Only if secondaries dose/fluence are needed
#/analysis/secondaries true 

/run/beamOn 100

#########################
# Move the generated .root & .out
# files into the
# "SimulationOutputs" folder
# if this folder has been created

/control/shell mv DoseDistribution.root SimulationOutputs/proton/BraggPeak/protonBraggPeak.root		
/control/shell mv Dose.out SimulationOutputs/proton/BraggPeak/Dose.out