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#ifndef G4Radioactivation_h
#define G4Radioactivation_h 1

#include "G4RadioactiveDecayBase.hh"

#include <vector>
#include <map>
#include <CLHEP/Units/SystemOfUnits.h>

#include "G4ios.hh"
#include "globals.hh"
#include "G4VRestDiscreteProcess.hh"
#include "G4ParticleChangeForRadDecay.hh"

#include "G4NucleusLimits.hh"
#include "G4RadioactiveDecayRatesToDaughter.hh"
#include "G4RadioactiveDecayChainsFromParent.hh"
#include "G4RadioactivityTable.hh"
#include "G4ThreeVector.hh"
#include "G4Threading.hh"

class G4Fragment;
class G4RadioactivationMessenger;

typedef std::vector<G4RadioactiveDecayChainsFromParent> G4RadioactiveDecayParentChainTable;
typedef std::vector<G4RadioactiveDecayRatesToDaughter> G4RadioactiveDecayRates;
typedef std::map<G4String, G4DecayTable*> DecayTableMap;


class G4Radioactivation : public G4RadioactiveDecayBase
{
  public: // with description

    G4Radioactivation(const G4String& processName="Radioactivation");
    ~G4Radioactivation();

    virtual void ProcessDescription(std::ostream& outFile) const;

    // Return decay table if it exists, if not, load it from file
    G4DecayTable* GetDecayTable1(const G4ParticleDefinition*);

    // Set the decay biasing scheme using the data in "filename"
    void SetDecayBias(G4String filename);

    // Set the half-life threshold for isomer production
    void SetHLThreshold(G4double hl) {halflifethreshold = hl;}

    void SetSourceTimeProfile(G4String filename);
    // Set source exposure function using histograms in "filename"

    G4bool IsRateTableReady(const G4ParticleDefinition &);
    // Returns true if the coefficient and decay time table for all the
    // descendants of the specified isotope are ready.
    // used in VR decay mode only

    void CalculateChainsFromParent(const G4ParticleDefinition&);
    // Calculates the coefficient and decay time table for all the descendents
    // of the specified isotope.  Adds the calculated table to the private data
    // member "theParentChainTable".
    // used in VR decay mode only 

    void GetChainsFromParent(const G4ParticleDefinition&);
    // Used to retrieve the coefficient and decay time table for all the
    // descendants of the specified isotope from "theParentChainTable"
    // and place it in "chainsFromParent".
    // used in VR decay mode only 

    void SetDecayRate(G4int,G4int,G4double, G4int, std::vector<G4double>,
                      std::vector<G4double>);
    // Sets "theDecayRate" with data supplied in the arguements.
    // used in VR decay mode only 

    std::vector<G4RadioactivityTable*> GetTheRadioactivityTables()
       {return theRadioactivityTables;}
    // Return vector of G4Radioactivity map - should be used in VR mode only


    // Controls whether G4Radioactivation runs in analogue mode or
    // variance reduction mode.  SetBRBias, SetSplitNuclei and
    // SetSourceTimeProfile all turn off analogue mode and use VR mode
    inline void SetAnalogueMonteCarlo (G4bool r ) {
      AnalogueMC = r;
      if (!AnalogueMC) halflifethreshold = 1e-6*CLHEP::s;
    }

    // Returns true if the simulation is an analogue Monte Carlo, and false if
    // any of the biassing schemes have been selected.
    inline G4bool IsAnalogueMonteCarlo () {return AnalogueMC;}

     // Sets whether branching ration bias scheme applies.
    inline void SetBRBias(G4bool r) {
      BRBias = r;
      AnalogueMC = false;
    }

    // Sets the number of times a nucleus will decay when biased
    inline void SetSplitNuclei(G4int r) {
      NSplit = r;
      AnalogueMC = false;
    }

    //  Returns the nuclear splitting number
    inline G4int GetSplitNuclei () {return NSplit;}

    G4VParticleChange* DecayIt(const G4Track& theTrack,
                               const G4Step&  theStep);

  protected:

    G4double ConvolveSourceTimeProfile(const G4double, const G4double);
    G4double GetDecayTime();
    G4int GetDecayTimeBin(const G4double aDecayTime);

    G4double GetMeanLifeTime(const G4Track& theTrack,
                             G4ForceCondition* condition);

    //Add gamma,Xray,conversion,and auger electrons for bias mode
    void AddDeexcitationSpectrumForBiasMode(G4ParticleDefinition* apartDef,
                                            G4double weight,
                                            G4double currenTime,
                                            std::vector<double>& weights_v,
                                            std::vector<double>& times_v,
                                            std::vector<G4DynamicParticle*>& secondaries_v);

    G4RadioactivationMessenger* theRadioactivationMessenger;

  private:

    G4bool AnalogueMC;
    G4bool BRBias;
    G4int NSplit;

    G4double halflifethreshold;

    G4int NSourceBin;
    G4double SBin[100];
    G4double SProfile[100];
    G4int NDecayBin;
    G4double DBin[100];
    G4double DProfile[100];

    G4RadioactiveDecayRatesToDaughter ratesToDaughter;
    G4RadioactiveDecayRates theDecayRateVector;
    G4RadioactiveDecayChainsFromParent chainsFromParent;
    G4RadioactiveDecayParentChainTable theParentChainTable;

    // for the radioactivity tables
    std::vector<G4RadioactivityTable*> theRadioactivityTables;
    G4int decayWindows[100];

    inline
    G4VParticleChange* AtRestDoIt(const G4Track& theTrack, const G4Step& theStep)
      {return DecayIt(theTrack, theStep);}

    inline
    G4VParticleChange* PostStepDoIt(const G4Track& theTrack, const G4Step& theStep)
      {return DecayIt(theTrack, theStep);}
};

#endif