# G.A.P.Cirrone
#
# Default macro file. It is called 
# a) If no argument is provided at run i.e. by simply typing $G4WORKDIR/bin/Linux-++/Hadrontherapy <no argument here!>
#
# b) If the user set the PHISLIST environment variable with one of the reference physics list
#    contained in $G4INSTALL/source/physics_lists/lists folder list
# 
# This macro can be used for a proton beam in water. Both electromagnetic and
# hadronic models are swiched on

#########################
# Set of the verboses 
#
/control/verbose 1
/tracking/verbose 0
/run/verbose 1
/event/verbose 0

##########################
# Initialisation procedure
#
/run/initialize

##########################
# Visualisation 
#
/vis/scene/create
/vis/open OGL
/vis/viewer/flush
/vis/viewer/set/viewpointThetaPhi 30 140 deg
/vis/viewer/zoom 1
/vis/viewer/pan -10  0 cm
/vis/scene/add/trajectories
/vis/scene/endOfEventAction accumulate

##########################
# Definition of the GUI
## It will work only if the QT GUI interface is active
#
/control/execute macro/GUIPersonalisation.mac

##########################
# Set here the cut and the step max for the tracking. 
# Suggested values of cut and step:
#


# Definition of the production cuts
#/run/setCut 0.01 mm
/run/setCutForAGivenParticle e- 1 mm
/run/setCutForAGivenParticle e+ 1 mm
/run/setCutForAGivenParticle gamma 1 mm
/run/setCutForAGivenParticle proton 1 mm
/run/setCutForRegion DetectorLog 0.01 mm


#########################
# Set the primary particle type,
# energy and position along the X direction
#


#---------------------------gps-----------------
/gps/pos/shape Circle
/gps/pos/centre -310. 0. 0. cm
/gps/pos/radius 0. mm
/gps/pos/sigma_r 2. mm
/gps/particle proton
/gps/pos/type Beam


# the incident surface is in the y-z plane

/gps/pos/rot1 0 1 0
/gps/pos/rot2 0 0 1

# the beam is travelling along the x-axis without any angular dispersion (angular despersion set to 0.0)
#

/gps/ang/rot1 0 0 1
/gps/ang/rot2 0 1 0 
/gps/ang/type beam1d 
/gps/ang/sigma_r 0. deg


# the beam energy is in gaussian profile
#
/gps/ene/type Gauss
/gps/ene/mono 62 MeV
/gps/ene/sigma 0.3 MeV

############################################################################################################################## 
# 							 DETECTOR DESCRIPTION
###################################################
# USE THE FOLLOWING FOUR LINES FOR DEFINITION OF PHANTOM
###################################################
#
#/changePhantom/position 20. 0. 0. cm
#/changePhantom/update

/changePhantom/size 40 40 40  cm
/changePhantom/position 20 0 0 cm

###################################################
# USE THE FOLLOWING FOR A VOXELLIZED DETECTOR
###################################################
#


/changeDetector/size 4 4 4 cm
/changeDetector/voxelSize .1 40 40 mm

# Put the detector in the lower left corner of the phantom
#
/changeDetector/displacement 0 18 18 cm
/changePhantom/update

#########################
# Display the event number
# during the run
# 
/event/printEventNumber 100

#########################
# Start of the run
#
# If secondary particles dose & fluence are needed
#/analysis/secondary true 

# Default material is water liquid
#/changePhantom/material G4_PLEXIGLASS

/run/beamOn 1000 

# Create the SimulationOutputs/proton/BraggPeak directory before to use the following command
/control/shell mv DoseDistribution.root experimentalData/proton/BraggPeak/protonBraggPeak.root