// // ******************************************************************** // * License and Disclaimer * // * * // * The Geant4 software is copyright of the Copyright Holders of * // * the Geant4 Collaboration. It is provided under the terms and * // * conditions of the Geant4 Software License, included in the file * // * LICENSE and available at http://cern.ch/geant4/license . These * // * include a list of copyright holders. * // * * // * Neither the authors of this software system, nor their employing * // * institutes,nor the agencies providing financial support for this * // * work make any representation or warranty, express or implied, * // * regarding this software system or assume any liability for its * // * use. Please see the license in the file LICENSE and URL above * // * for the full disclaimer and the limitation of liability. * // * * // * This code implementation is the result of the scientific and * // * technical work of the GEANT4 collaboration. * // * By using, copying, modifying or distributing the software (or * // * any work based on the software) you agree to acknowledge its * // * use in resulting scientific publications, and indicate your * // * acceptance of all terms of the Geant4 Software license. * // ******************************************************************** // // // Author: Mathieu Karamitros // The code is developed in the framework of the ESA AO7146 // // We would be very happy hearing from you, send us your feedback! :) // // In order for Geant4-DNA to be maintained and still open-source, // article citations are crucial. // If you use Geant4-DNA chemistry and you publish papers about your software, // in addition to the general paper on Geant4-DNA: // // Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178 // // we would be very happy if you could please also cite the following // reference papers on chemistry: // // J. Comput. Phys. 274 (2014) 841-882 // Prog. Nucl. Sci. Tec. 2 (2011) 503-508 #pragma once #include #include class G4DNAMolecularReactionTable; class G4VDNAReactionModel; /** * G4DNAMolecularStepByStepModel : * - TimeStepper : G4DNAMolecularEncounterStepper * - ReactionProcess : G4DNAMolecularReaction * Before each step, the next minimum encounter time is calculated for each * pair of molecule. The minimum time step is selected. All the molecules are stepped * within this time step. Then, only the relevant pair of molecules are checked for * reaction. */ class G4DNAMolecularStepByStepModel : public G4VITStepModel { public: G4DNAMolecularStepByStepModel(const G4String& name = "DNAMolecularStepByStepModel"); G4DNAMolecularStepByStepModel(const G4String& name, std::unique_ptr pTimeStepper, std::unique_ptr pReactionProcess); G4DNAMolecularStepByStepModel& operator=(const G4DNAMolecularStepByStepModel&) = delete; G4DNAMolecularStepByStepModel(const G4DNAMolecularStepByStepModel&) = delete; ~G4DNAMolecularStepByStepModel() override; void PrintInfo() override; void Initialize() override; void SetReactionModel(G4VDNAReactionModel*); G4VDNAReactionModel* GetReactionModel(); protected: const G4DNAMolecularReactionTable*& fMolecularReactionTable; std::unique_ptr fpReactionModel; };