// Copyright (C) 2010, Guy Barrand. All rights reserved. // See the file tools.license for terms. #ifndef toolx_hdf5_h2file #define toolx_hdf5_h2file #include "tools" #include "T_tools" #include #include #include namespace toolx { namespace hdf5 { }} #include namespace toolx { namespace hdf5 { inline bool write_std_map_ss(hid_t a_loc,const std::string& a_name,const std::map& a_map, unsigned int /*a_chunked*/ = 0,unsigned int /*a_compress*/ = 0) { if(!write_scalar(a_loc,a_name+"_size",a_map.size())) return false; unsigned int count = 0; //uint for num2s. std::string scount; for(auto it = a_map.cbegin(); it != a_map.cend(); ++it) { tools::num2s(count,scount); if(!write_string(a_loc,a_name+"_elem_"+scount+"_first",(*it).first)) return false; if(!write_string(a_loc,a_name+"_elem_"+scount+"_secon",(*it).second)) return false; count++; } return true; } inline bool read_std_map_ss(hid_t a_loc,const std::string& a_name,std::map& a_map, unsigned int /*a_chunked*/ = 0,unsigned int /*a_compress*/ = 0) { a_map.clear(); tools::uint64 sz; if(!read_scalar(a_loc,a_name+"_size",sz)) return false; std::string scount,key,value; for(tools::uint64 count=0;count histo_data_t; inline bool write_hdata(hid_t a_loc,const histo_data_t& a_hdata) { if(!write_string(a_loc,"title",a_hdata.m_title)) return false; if(!write_scalar(a_loc,"dimension",a_hdata.m_dimension)) return false; if(!write_scalar(a_loc,"bin_number",a_hdata.m_bin_number)) return false; if(!write_std_vec(a_loc,"bin_entries",a_hdata.m_bin_entries)) return false; if(!write_std_vec(a_loc,"bin_Sw",a_hdata.m_bin_Sw)) return false; if(!write_std_vec(a_loc,"bin_Sw2",a_hdata.m_bin_Sw2)) return false; if(!write_std_vec_vec(a_loc,"bin_Sxw",a_hdata.m_bin_Sxw)) return false; if(!write_std_vec_vec(a_loc,"bin_Sx2w",a_hdata.m_bin_Sx2w)) return false; // axes : {std::string name,saxis; for(unsigned int iaxis=0;iaxis(a_loc,name+"offset",_axis.m_offset)) return false; if(!write_scalar(a_loc,name+"number_of_bins",_axis.m_number_of_bins)) return false; if(!write_scalar(a_loc,name+"minimum_value",_axis.m_minimum_value)) return false; if(!write_scalar(a_loc,name+"maximum_value",_axis.m_maximum_value)) return false; if(!write_scalar(a_loc,name+"fixed",_axis.m_fixed)) return false; if(!write_scalar(a_loc,name+"bin_width",_axis.m_bin_width)) return false; if(!write_std_vec(a_loc,name+"edges",_axis.m_edges)) return false; }} // etc : if(!write_std_vec(a_loc,"in_range_plane_Sxyw",a_hdata.m_in_range_plane_Sxyw)) return false; // m_annotations : if(!write_std_map_ss(a_loc,"annotations",a_hdata.m_annotations)) return false; return true; } template inline bool write_histo(std::ostream& a_out,hid_t a_loc,const std::string& a_name,const HISTO& a_histo) { hid_t histo = toolx_H5Gcreate(a_loc,a_name.c_str(),0); if(histo<0) { a_out << "toolx::hdf5::write_histo : can't create group for histo " << tools::sout(a_name) << "." << std::endl; ::H5Gclose(histo); return false; } if(!write_atb(histo,"type","object")) { a_out << "toolx::hdf5::write_histo : write_atb() class failed." << std::endl; ::H5Gclose(histo); return false; } if(!write_atb(histo,"class",a_histo.s_cls())) { a_out << "toolx::hdf5::write_histo : write_atb() class failed." << std::endl; ::H5Gclose(histo); return false; } int v = 1; if(!write_scalar_atb(histo,"version",v)) { a_out << "toolx::hdf5::write_histo : write_scalar_atb() version failed." << std::endl; ::H5Gclose(histo); return false; } if(!write_hdata(histo,a_histo.dac())) {::H5Gclose(histo);return false;} ::H5Gclose(histo); a_histo.not_a_profile(); //trick to be sure to use this function on an histo and not a profile. return true; } template inline bool write_profile(std::ostream& a_out,hid_t a_loc,const std::string& a_name,const PROFILE& a_histo) { hid_t histo = toolx_H5Gcreate(a_loc,a_name.c_str(),0); if(histo<0) { a_out << "toolx::hdf5::write_profile : can't create group for histo " << tools::sout(a_name) << "." << std::endl; ::H5Gclose(histo); return false; } if(!write_atb(histo,"type","object")) { a_out << "toolx::hdf5::write_profile : write_atb() class failed." << std::endl; ::H5Gclose(histo); return false; } if(!write_atb(histo,"class",a_histo.s_cls())) { a_out << "toolx::hdf5::write_profile : write_atb() class failed." << std::endl; ::H5Gclose(histo); return false; } int v = 1; if(!write_scalar_atb(histo,"version",v)) { a_out << "toolx::hdf5::write_profile : write_scalar_atb() version failed." << std::endl; ::H5Gclose(histo); return false; } typename PROFILE::pd_t pdata = a_histo.get_histo_data(); if(!write_hdata(histo,pdata)) {::H5Gclose(histo);return false;} if(!write_bool(histo,"is_profile",pdata.m_is_profile)) {::H5Gclose(histo);return false;} if(!write_std_vec(histo,"bin_Svw",pdata.m_bin_Svw)) {::H5Gclose(histo);return false;} if(!write_std_vec(histo,"bin_Sv2w",pdata.m_bin_Sv2w)) {::H5Gclose(histo);return false;} if(!write_bool(histo,"cut_v",pdata.m_cut_v)) {::H5Gclose(histo);return false;} if(!write_scalar(histo,"min_v",pdata.m_min_v)) {::H5Gclose(histo);return false;} if(!write_scalar(histo,"max_v",pdata.m_max_v)) {::H5Gclose(histo);return false;} ::H5Gclose(histo); return true; } inline bool read_hdata(hid_t a_loc,histo_data_t& a_hdata) { if(!read_string(a_loc,"title",a_hdata.m_title)) return false; if(!read_scalar(a_loc,"dimension",a_hdata.m_dimension)) return false; if(!read_scalar(a_loc,"bin_number",a_hdata.m_bin_number)) return false; if(!read_std_vec(a_loc,"bin_entries",a_hdata.m_bin_entries)) return false; if(!read_std_vec(a_loc,"bin_Sw",a_hdata.m_bin_Sw)) return false; if(!read_std_vec(a_loc,"bin_Sw2",a_hdata.m_bin_Sw2)) return false; if(!read_std_vec_vec(a_loc,"bin_Sxw",a_hdata.m_bin_Sxw)) return false; if(!read_std_vec_vec(a_loc,"bin_Sx2w",a_hdata.m_bin_Sx2w)) return false; // axes : {a_hdata.m_axes.resize(a_hdata.m_dimension); std::string name,saxis; for(unsigned int iaxis=0;iaxis(a_loc,name+"offset",_axis.m_offset)) return false; if(!read_scalar(a_loc,name+"number_of_bins",_axis.m_number_of_bins)) return false; if(!read_scalar(a_loc,name+"minimum_value",_axis.m_minimum_value)) return false; if(!read_scalar(a_loc,name+"maximum_value",_axis.m_maximum_value)) return false; if(!read_scalar(a_loc,name+"fixed",_axis.m_fixed)) return false; if(!read_scalar(a_loc,name+"bin_width",_axis.m_bin_width)) return false; if(!read_std_vec(a_loc,name+"edges",_axis.m_edges)) return false; }} // etc : if(!read_std_vec(a_loc,"in_range_plane_Sxyw",a_hdata.m_in_range_plane_Sxyw)) return false; // m_annotations : if(!read_std_map_ss(a_loc,"annotations",a_hdata.m_annotations)) return false; return true; } template inline bool read_histo(std::ostream& a_out,hid_t a_loc,const std::string& a_name,HISTO*& a_histo,bool a_verb_class = true) { a_histo = 0; hid_t histo = toolx_H5Gopen(a_loc,a_name.c_str()); if(histo<0) { a_out << "toolx::hdf5::read_histo : can't open group." << std::endl; return false; } std::string sclass; if(!read_atb(histo,"class",sclass)) { a_out << "toolx::hdf5::read_histo : can't read_atb() class." << std::endl; ::H5Gclose(histo); return false; } if(sclass!=HISTO::s_class()) { if(a_verb_class) { a_out << "toolx::hdf5::read_histo :" << " read class " << tools::sout(sclass) << " not " << tools::sout(HISTO::s_class()) << std::endl; } ::H5Gclose(histo); return false; } int v; if(!read_atb(histo,"version",v)) { a_out << "toolx::hdf5::read_histo : read_atb version failed." << std::endl; ::H5Gclose(histo); return false; } histo_data_t hdata; if(!read_hdata(histo,hdata)) {::H5Gclose(histo);return false;} ::H5Gclose(histo); hdata.update_fast_getters(); a_histo = new HISTO; a_histo->copy_from_data(hdata); a_histo->not_a_profile(); //trick to be sure to use this function on an histo and not a profile. return true; } template inline bool read_profile(std::ostream& a_out,hid_t a_loc,const std::string& a_name,PROFILE*& a_histo,bool a_verb_class = true) { a_histo = 0; hid_t histo = toolx_H5Gopen(a_loc,a_name.c_str()); if(histo<0) { a_out << "toolx::hdf5::read_profile : can't open group." << std::endl; return false; } std::string sclass; if(!read_atb(histo,"class",sclass)) { a_out << "toolx::hdf5::read_profile : can't read_atb() class." << std::endl; ::H5Gclose(histo); return false; } if(sclass!=PROFILE::s_class()) { if(a_verb_class) { a_out << "toolx::hdf5::read_profile :" << " read class " << tools::sout(sclass) << " not " << tools::sout(PROFILE::s_class()) << std::endl; } ::H5Gclose(histo); return false; } int v; if(!read_atb(histo,"version",v)) { a_out << "toolx::hdf5::read_profile : read_atb version failed." << std::endl; ::H5Gclose(histo); return false; } typename PROFILE::pd_t pdata; if(!read_hdata(histo,pdata)) {::H5Gclose(histo);return false;} if(!read_bool(histo,"is_profile",pdata.m_is_profile)) {::H5Gclose(histo);return false;} if(!read_std_vec(histo,"bin_Svw",pdata.m_bin_Svw)) {::H5Gclose(histo);return false;} if(!read_std_vec(histo,"bin_Sv2w",pdata.m_bin_Sv2w)) {::H5Gclose(histo);return false;} if(!read_bool(histo,"cut_v",pdata.m_cut_v)) {::H5Gclose(histo);return false;} if(!read_scalar(histo,"min_v",pdata.m_min_v)) {::H5Gclose(histo);return false;} if(!read_scalar(histo,"max_v",pdata.m_max_v)) {::H5Gclose(histo);return false;} ::H5Gclose(histo); pdata.update_fast_getters(); a_histo = new PROFILE; a_histo->copy_from_data(pdata); return true; } inline bool read_class_version(std::ostream& a_out,hid_t a_loc,const std::string& a_name, std::string& a_class,int& a_version,bool a_verbose = true) { hid_t id = toolx_H5Gopen(a_loc,a_name.c_str()); if(id<0) { if(a_verbose) a_out << "toolx::hdf5::read_class_version : can't open group." << std::endl; a_class.clear(); a_version = 0; return false; } if(!read_atb(id,"class",a_class)) { if(a_verbose) a_out << "toolx::hdf5::read_class_version : can't read_atb() class." << std::endl; ::H5Gclose(id); a_class.clear(); a_version = 0; return false; } if(!read_atb(id,"version",a_version)) { if(a_verbose) a_out << "toolx::hdf5::read_class_version : read_atb version failed." << std::endl; ::H5Gclose(id); a_class.clear(); a_version = 0; return false; } ::H5Gclose(id); return true; } }} #endif