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/// \file Run.hh
/// \brief Definition of the Run class

// This example is provided by the Geant4-DNA collaboration
// Any report or published results obtained using the Geant4-DNA software
// shall cite the following Geant4-DNA collaboration publication:
// Med. Phys. 37 (2010) 4692-4708
// and papers
// M. Batmunkh et al. J Radiat Res Appl Sci 8 (2015) 498-507
// O. Belov et al. Physica Medica 32 (2016) 1510-1520
// The Geant4-DNA web site is available at http://geant4-dna.org
//
// -------------------------------------------------------------------
// November 2016
// -------------------------------------------------------------------
//

#ifndef Run_h
#define Run_h 1

#include "G4Molecule.hh"
#include "G4Run.hh"
#include "G4VProcess.hh"
#include "globals.hh"

#include <map>

class DetectorConstruction;
class G4ParticleDefinition;
class G4Molecule;

//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......

class Run : public G4Run
{
  public:
    Run(DetectorConstruction*);
    ~Run() override;

    void SetPrimary(G4ParticleDefinition* particle, G4double energy);
    void AddPrimaryLET(G4double let);
    void SetTrackLength(G4double tracklen);
    void CountProcesses(const G4VProcess* process);
    void ParticleCount(G4String, G4double);
    void ParticleCountNeuron(G4String, G4double);
    void MoleculeCount(G4String, G4double);
    void MoleculeCountNeuron(G4Molecule* molecule);
    void AddEdep(G4double edep);
    void AddEflow(G4double eflow);
    void ParticleFlux(G4String, G4double);

    void Merge(const G4Run*) override;
    void EndOfRun();

    // Edep in all volume
    G4double GetEdepALL() { return fEdepAll; }
    void SetEdepALL(G4double vall) { fEdepAll = vall; }
    void AddEdepALL(G4double vall)
    {
      fEdepAll += vall;
      fEdepAll_err += vall * vall;
    }
    // 0. Edep in homogeneous Medium
    G4double GetEdepMedium() { return fEdepMedium; }
    void SetEdepMedium(G4double vall) { fEdepMedium = vall; }
    void AddEdepMedium(G4double vall)
    {
      fEdepMedium += vall;
      fEdepMedium_err += vall * vall;
    }
    // 1. Edep in Bounding Slice Volume
    G4double GetEdepSlice() { return fEdepSlice; }
    void SetEdepSlice(G4double vall) { fEdepSlice = vall; }
    void AddEdepSlice(G4double vall)
    {
      fEdepSlice += vall;
      fEdepSlice_err += vall * vall;
    }
    // 2. Edep in Soma volume
    G4double GetEdepSoma() { return fEdepSoma; }
    void SetEdepSoma(G4double vall) { fEdepSoma = vall; }
    void AddEdepSoma(G4double vall)
    {
      fEdepSoma += vall;
      fEdepSoma_err += vall * vall;
    }

    void AddSomaCompart(G4int i, G4double x) { fSoma3DEdep[i] += x; }
    G4double GetSomaCompart(G4int i) { return fSoma3DEdep[i]; }

    // 3. Edep in Dendrites volume
    G4double GetEdepDend() { return fEdepDend; }
    void SetEdepDend(G4double vall) { fEdepDend = vall; }
    void AddEdepDend(G4double vall)
    {
      fEdepDend += vall;
      fEdepDend_err += vall * vall;
    }

    void AddDendCompart(G4int i, G4double x) { fDend3DEdep[i] += x; }
    G4double GetDendCompart(G4int i) { return fDend3DEdep[i]; }

    // 4. Edep in Axon volume
    G4double GetEdepAxon() { return fEdepAxon; }
    void SetEdepAxon(G4double vall) { fEdepAxon = vall; }
    void AddEdepAxon(G4double vall)
    {
      fEdepAxon += vall;
      fEdepAxon_err += vall * vall;
    }

    void AddAxonCompart(G4int i, G4double x) { fAxon3DEdep[i] += x; }
    G4double GetAxonCompart(G4int i) { return fAxon3DEdep[i]; }

    // 5. Edep in whole Neuron volume
    G4double GetEdepNeuron() { return fEdepNeuron; }
    void SetEdepNeuron(G4double vall) { fEdepNeuron = vall; }
    void AddEdepNeuron(G4double vall)
    {
      fEdepNeuron += vall;
      fEdepNeuron_err += vall * vall;
    }

  private:
    struct ParticleData
    {
        ParticleData() : fCount(0), fEmean(0.), fEmin(0.), fEmax(0.) {}
        ParticleData(G4int count, G4double ekin, G4double emin, G4double emax)
          : fCount(count), fEmean(ekin), fEmin(emin), fEmax(emax)
        {}
        G4int fCount;
        G4double fEmean;
        G4double fEmin;
        G4double fEmax;
    };

    DetectorConstruction* fDetector;
    G4ParticleDefinition* fParticle;
    G4double fEkin{0.0};
    G4double fLET{0.0};
    G4double fLET2{0.0};
    G4double ftrackLength{0.0};
    G4double fTrackLen{0.0};
    G4double fTrackLen2{0.0};
    G4int fNParticle{0};

    G4double* fSoma3DEdep;
    G4double* fDend3DEdep;
    G4double* fAxon3DEdep;
    G4double* fNeuron3DEdep;
    G4double fEdepAll, fEdepAll_err, fEdepMedium, fEdepMedium_err, fEdepSlice, fEdepSlice_err,
      fEdepSoma, fEdepSoma_err, fEdepDend, fEdepDend_err, fEdepAxon, fEdepAxon_err, fEdepNeuron,
      fEdepNeuron_err;

    G4int fmolNum{0};
    G4int fmolNum2{0};
    G4double fEnergyFlow{0.0};
    G4double fEnergyFlow2{0.0};
    std::map<G4String, G4int> fMoleculeNumber;
    std::map<G4String, G4int> fProcCounter;
    std::map<G4String, ParticleData> fParticleDataMap1;
    std::map<G4String, ParticleData> fParticleDataMap2;
};

#endif