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//GEANT4 - Depth-of-Interaction enabled Positron emission tomography (PET) advanced example 

//Authors and contributors

// Author list to be updated, with names of co-authors and contributors from National Institute of Radiological Sciences (NIRS)

// Abdella M. Ahmed (1, 2), Andrew Chacon (1, 2), Harley Rutherford (1, 2),
// Hideaki Tashima (3), Go Akamatsu (3), Akram Mohammadi (3), Eiji Yoshida (3), Taiga Yamaya (3)
// Susanna Guatelli (2), and Mitra Safavi-Naeini (1, 2)

// (1) Australian Nuclear Science and Technology Organisation, Australia
// (2) University of Wollongong, Australia
// (3) National Institute of Radiological Sciences, Japan



//
#include "doiPETRunAction.hh"
#include "doiPETRun.hh"
#include "doiPETDetectorConstruction.hh"
#include "doiPETPrimaryGeneratorAction.hh"
#include "doiPETAnalysis.hh"

#include "G4RunManager.hh"
#include "G4Run.hh"
#include "G4UnitsTable.hh"
#include "G4SystemOfUnits.hh"

#include "Randomize.hh"
#include <sstream>
#include <vector>
#include <fstream>

//
#ifdef ANALYSIS_USE
doiPETRunAction::doiPETRunAction(doiPETAnalysis* analysis) : G4UserRunAction()
{
	analysisMan = analysis;
}
#else
doiPETRunAction::doiPETRunAction()
{ }
#endif
//


doiPETRunAction::~doiPETRunAction()
{}

//
G4Run* doiPETRunAction::GenerateRun()
{ 
	fRun = new doiPETRun();
	return fRun;
}

//

void doiPETRunAction::BeginOfRunAction(const G4Run* aRun)
{ 
	//pass file name without fname extention
	//inform the runManager to save random number seed
	G4RunManager::GetRunManager()->SetRandomNumberStore(false);
	G4cout << "### Begin of Run " << aRun->GetRunID() << " start." << G4endl;
#ifdef ANALYSIS_USE
  // Create ROOT file, histograms and ntuple
  analysisMan -> book();
#endif 
	if (isMaster) {
		G4Random::showEngineStatus();
	}	
}


void doiPETRunAction::EndOfRunAction(const G4Run*)
{
	G4int nofEvents = fRun->GetNumberOfEvent();
	if (nofEvents == 0) return;
	G4cout<<G4endl<<"### End of Run ("<<nofEvents<<" events)"<<G4endl;
#ifdef ANALYSIS_USE
// Close the output ROOT file with the results
   analysisMan -> finish(); 
#endif
}