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This commit is contained in:
Gabriele Cosmo
2017-12-08 12:52:30 +01:00
parent 98e455a940
commit fc6af9e721
2166 changed files with 276760 additions and 100873 deletions
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examples/.doxygen/Doxyfile
+8 -2
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@@ -152,7 +152,7 @@ FULL_PATH_NAMES = YES
# will be relative from the directory where doxygen is started.
# This tag requires that the tag FULL_PATH_NAMES is set to YES.
STRIP_FROM_PATH = /work/packages/geant4/geant4.10.1/examples/
STRIP_FROM_PATH = /Users/ivana/work/packages/geant4/geant4-10-04-cand-01/examples/
# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of the
# path mentioned in the documentation of a class, which tells the reader which
@@ -776,6 +776,7 @@ INPUT = Doxymain.h \
Doxymodules_parallel.h \
Doxymodules_parameterisations.h \
Doxymodules_persistency.h \
Doxymodules_physicslists.h \
Doxymodules_polarisation.h \
Doxymodules_radioactivedecay.h \
Doxymodules_runAndEvent.h \
@@ -846,7 +847,6 @@ INPUT = Doxymain.h \
../extended/hadronic/Hadr02/.README.txt \
../extended/hadronic/Hadr03/.README.txt \
../extended/hadronic/Hadr04/.README.txt \
../extended/hadronic/Hadr05/.README.txt \
../extended/hadronic/Hadr06/.README.txt \
../extended/hadronic/Hadr07/.README.txt \
../extended/hadronic/FissionFragment \
@@ -866,8 +866,10 @@ INPUT = Doxymain.h \
../extended/medical/dna/clustering/.README.txt \
../extended/medical/dna/dnaphysics/.README.txt \
../extended/medical/dna/icsd/.README.txt \
../extended/medical/dna/mfp/.README.txt \
../extended/medical/dna/microdosimetry/.README.txt \
../extended/medical/dna/microyz/.README.txt \
../extended/medical/dna/neuron/.README.txt \
../extended/medical/dna/pdb4dna/.README.txt \
../extended/medical/dna/range/.README.txt \
../extended/medical/dna/slowing/.README.txt \
@@ -890,6 +892,10 @@ INPUT = Doxymain.h \
../extended/parallel/TopC/ParN04/.README.N04.txt \
../extended/parameterisations \
../extended/persistency \
../extended/physicslists/.README.txt \
../extended/physicslists/factory/.README.txt \
../extended/physicslists/extensibleFactory/.README.txt \
../extended/physicslists/genericPL/.README.txt \
../extended/polarisation/.README.txt \
../extended/polarisation/Pol01/.README.txt \
../extended/radioactivedecay/.README.txt \
examples/.doxygen/Doxyfile_standalone
+1 -1
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@@ -152,7 +152,7 @@ FULL_PATH_NAMES = YES
# will be relative from the directory where doxygen is started.
# This tag requires that the tag FULL_PATH_NAMES is set to YES.
STRIP_FROM_PATH = /work/packages/geant4/geant4.10.1/examples/
STRIP_FROM_PATH = /Users/ivana/work/packages/geant4/geant4-10-04-cand-01/examples/
# The STRIP_FROM_INC_PATH tag can be used to strip a user-defined part of the
# path mentioned in the documentation of a class, which tells the reader which
examples/.doxygen/Doxymodules_hadronic.h
+5 -10
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@@ -1,4 +1,4 @@
// $Id: Doxymodules_hadronic.h 101330 2016-11-14 15:38:27Z gcosmo $
// $Id: Doxymodules_hadronic.h 107787 2017-11-30 13:11:33Z gcosmo $
// The example class categories definitions for Doxygen
/// \file Doxymodules_hadronic.h
@@ -55,15 +55,6 @@
/** @} */
/** @defgroup extended_hadronic_Hadr05 Hadr05
* The Hadr05 hadronic classes have their
* <a href="../html_Hadr05/html/index.html">standalone documentation </a>
* @ingroup extended_hadronic
* @{
*/
/** @} */
/** @defgroup extended_hadronic_Hadr06 Hadr06
* The Hadr06 hadronic classes have their
* <a href="../html_Hadr06/html/index.html">standalone documentation </a>
@@ -71,6 +62,8 @@
* @{
*/
/** @} */
/** @defgroup extended_hadronic_Hadr07 Hadr07
* The Hadr07 hadronic classes have their
* <a href="../html_Hadr05/html/index.html">standalone documentation </a>
@@ -78,6 +71,8 @@
* @{
*/
/** @} */
/** @defgroup extended_hadronic_FissionFragment FissionFragment
* Hadronic example FissionFragment
* @ingroup extended_hadronic
examples/.doxygen/Doxymodules_medical.h
+19 -1
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@@ -1,4 +1,4 @@
// $Id: Doxymodules_medical.h 104750 2017-06-15 08:47:26Z gcosmo $
// $Id: Doxymodules_medical.h 107787 2017-11-30 13:11:33Z gcosmo $
// The example class categories definitions for Doxygen
/// \file Doxymodules_medical.h
@@ -175,6 +175,15 @@
/** @} */
/** @defgroup extended_medical_dna_mfp mfp
* Medical dna mfp example has its
* <a href="../html_mfp/html/index.html">standalone documentation </a>
* @ingroup extended_medical_dna
* @{
*/
/** @} */
/** @defgroup extended_medical_dna_microdosimetry microdosimetry
* Medical dna microdosimetry example has its
* <a href="../html_microdosimetry/html/index.html">standalone documentation </a>
@@ -193,6 +202,15 @@
/** @} */
/** @defgroup extended_medical_dna_neuron neuron
* Medical dna neuron example has its
* <a href="../html_neuron/html/index.html">standalone documentation </a>
* @ingroup extended_medical_dna
* @{
*/
/** @} */
/** @defgroup extended_medical_dna_pdb4dna pdb4dna
* Medical dna pdb4dna example has its
* <a href="../html_pdb4dna/html/index.html">standalone documentation </a>
examples/.doxygen/Doxymodules_physicslists.h
+40
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@@ -0,0 +1,40 @@
// $Id: Doxymodules_physicslists.h 107673 2017-11-28 15:28:12Z gcosmo $
// The example class categories definitions for Doxygen
/// \file Doxymodules_physicslists.h
/// \brief The page that defines the extended/physicslists examples modules
/** @defgroup extended_physicslists physicslists
* Extended examples physicslists classes
* @{
*/
/** @defgroup extended_physicslists_factory factory
* Exotic physics example factory has its
* <a href="../html_factory/html/index.html">standalone documentation </a>
* @ingroup extended_physicslists
* @{
*/
/** @} */
/** @defgroup extended_physicslists_extensibleFactory extensibleFactory
* physicslists extensibleFactory example has its
* <a href="../html_extensibleFactory/html/index.html">standalone documentation </a>
* @ingroup extended_physicslists
* @{
*/
/** @} */
/** @defgroup extended_physicslists_genericPL genericPL
* physicslists genericPL example has its
* <a href="../html_genericPL/html/index.html">standalone documentation </a>
* @ingroup extended_physicslists
* @{
*/
/** @} */
/** @} */
examples/.doxygen/History
+9
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@@ -18,6 +18,15 @@ track of all tags.
* Reverse chronological order (last date on top), please *
----------------------------------------------------------
30/11/17 I.Hrivnacova (doxygen-V10-03-02)
- Fixing documentation for 10.4:
- Added still missing new dna examples (mft, neuron)
- Removed Hadr05
28/11/17 I.Hrivnacova (doxygen-V10-03-01)
- Added new physicslists category
- Fixed warning in Doxymodules_hadronic.h
13/06/17 I.Hrivnacova (doxygen-V10-03-00)
- Added new extended examples exoticphysics/dmparticle,
medical/dna/icsd, slowing, spower and radioactivedecay/Activation
examples/.doxygen/generate_standalone.sh
+2 -2
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@@ -45,12 +45,12 @@ generate() {
}
# process examples in second level directory in extended
for DIR in analysis/shared analysis/AnaEx01 analysis/AnaEx02 analysis/AnaEx03 electromagnetic/TestEm0 electromagnetic/TestEm1 electromagnetic/TestEm2 electromagnetic/TestEm3 electromagnetic/TestEm4 electromagnetic/TestEm5 electromagnetic/TestEm6 electromagnetic/TestEm7 electromagnetic/TestEm8 electromagnetic/TestEm9 electromagnetic/TestEm10 electromagnetic/TestEm11 electromagnetic/TestEm12 electromagnetic/TestEm13 electromagnetic/TestEm14 electromagnetic/TestEm15 electromagnetic/TestEm16 electromagnetic/TestEm17 electromagnetic/TestEm18 eventgenerator/particleGun eventgenerator/exgps eventgenerator/userPrimaryGenerator exoticphysics/channeling exoticphysics/dmparticle exoticphysics/monopole geometry/transforms hadronic/Hadr00 hadronic/Hadr01 hadronic/Hadr02 hadronic/Hadr03 hadronic/Hadr04 hadronic/Hadr05 hadronic/Hadr06 hadronic/Hadr07 hadronic/NeutronSource medical/electronScattering medical/electronScattering2 medical/fanoCavity medical/fanoCavity2 medical/GammaTherapy polarisation/Pol01 radioactivedecay/Activation radioactivedecay/rdecay01 radioactivedecay/rdecay02; do
for DIR in analysis/shared analysis/AnaEx01 analysis/AnaEx02 analysis/AnaEx03 electromagnetic/TestEm0 electromagnetic/TestEm1 electromagnetic/TestEm2 electromagnetic/TestEm3 electromagnetic/TestEm4 electromagnetic/TestEm5 electromagnetic/TestEm6 electromagnetic/TestEm7 electromagnetic/TestEm8 electromagnetic/TestEm9 electromagnetic/TestEm10 electromagnetic/TestEm11 electromagnetic/TestEm12 electromagnetic/TestEm13 electromagnetic/TestEm14 electromagnetic/TestEm15 electromagnetic/TestEm16 electromagnetic/TestEm17 electromagnetic/TestEm18 eventgenerator/particleGun eventgenerator/exgps eventgenerator/userPrimaryGenerator exoticphysics/channeling exoticphysics/dmparticle exoticphysics/monopole geometry/transforms hadronic/Hadr00 hadronic/Hadr01 hadronic/Hadr02 hadronic/Hadr03 hadronic/Hadr04 hadronic/Hadr06 hadronic/Hadr07 hadronic/NeutronSource medical/electronScattering medical/electronScattering2 medical/fanoCavity medical/fanoCavity2 medical/GammaTherapy physicslists/extensibleFactory physicslists/factory physicslists/genericPL polarisation/Pol01 radioactivedecay/Activation radioactivedecay/rdecay01 radioactivedecay/rdecay02; do
generate ${DIR} ${BACK_PATH2}
done
# process examples in third level directory in extended
for DIR in eventgenerator/HepMC/MCTruth parallel/TopC/ParN02 parallel/TopC/ParN04 medical/dna/chem1 medical/dna/chem2 medical/dna/chem3 medical/dna/chem4 medical/dna/clustering medical/dna/dnaphysics medical/dna/microdosimetry medical/dna/microyz medical/dna/pdb4dna medical/dna/range medical/dna/svalue medical/dna/wholeNuclearDNA medical/dna/wvalue; do
for DIR in eventgenerator/HepMC/MCTruth parallel/TopC/ParN02 parallel/TopC/ParN04 medical/dna/chem1 medical/dna/chem2 medical/dna/chem3 medical/dna/chem4 medical/dna/clustering medical/dna/dnaphysics medical/dna/icsd medical/dna/mfp medical/dna/microdosimetry medical/dna/microyz medical/dna/neuron medical/dna/pdb4dna medical/dna/range medical/dna/slowing medical/dna/spower medical/dna/svalue medical/dna/wholeNuclearDNA medical/dna/wvalue; do
generate ${DIR} ${BACK_PATH3}
done