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This commit is contained in:
Gabriele Cosmo
2016-06-09 10:56:29 +02:00
parent 1d812b78b1
commit e083ffb441
1415 changed files with 111223 additions and 21207 deletions
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examples/advanced/brachytherapy/Brachy.cc
+2 -2
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@@ -22,7 +22,7 @@
//
//
// $Id: Brachy.cc
// GEANT4 tag $Name: geant4-06-01 $
// GEANT4 tag $Name: geant4-06-02 $
//
// --------------------------------------------------------------
// GEANT 4 - Brachytherapy example
@@ -100,7 +100,7 @@ int main(int argc ,char ** argv)
#ifdef G4ANALYSIS_USE
G4cout << G4endl << G4endl << G4endl
<< " User Environment " << G4endl
<< " Using AIDA 3.0 analysis " << G4endl;
<< " Using AIDA 3.2.1 analysis " << G4endl;
# else
G4cout << G4endl << G4endl << G4endl
<< " User Environment " << G4endl
examples/advanced/brachytherapy/History
+6 -2
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@@ -1,5 +1,5 @@
-------------------------------------------------------------------
$Id: History,v 1.7 2004/03/11 15:38:41 guatelli Exp $
$Id: History,v 1.8 2004/05/13 14:47:46 guatelli Exp $
-------------------------------------------------------------------
=========================================================
@@ -8,7 +8,11 @@ $Id: History,v 1.7 2004/03/11 15:38:41 guatelli Exp $
Category History file
---------------------
11.3.2003 - Susanna Guatelli
13.5.2004 - Susanna Guatelli
Migration to AIDA 3.2.1 and PI 1.2.1
11.3.2004 - Susanna Guatelli
Add a histogram, maintenance of the code
12.11.2003 - John Allison
examples/advanced/brachytherapy/IodiumSourceMacro.mac
+1 -1
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@@ -4,4 +4,4 @@
/source/switch Iodium
/run/energy Iodium
/run/initialize
/run/beamOn 1000
/run/beamOn 5000
examples/advanced/brachytherapy/IridiumSourceMacro.mac
+1 -1
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@@ -2,4 +2,4 @@
/run/verbose 0
/event/verbose 0
/run/initialize
/run/beamOn 1000
/run/beamOn 5000
examples/advanced/brachytherapy/LeipzigSourceMacro.mac
+1 -1
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@@ -3,4 +3,4 @@
/event/verbose 0
/source/switch Leipzig
/run/initialize
/run/beamOn 1000
/run/beamOn 5000
examples/advanced/brachytherapy/README
+9 -14
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@@ -23,28 +23,23 @@ voxels (1.mm dimension) |
-------------------------------------------------------------------------
----> 2.SET-UP
|
-example enviroment with the compiler 3.2
-example enviroment with the compiler 3.2.3
-a standard Geant4 example GNUmakefile is provided |
setup with: |
compiler = gcc-3.2
compiler = gcc-3.2.3
G4SYSTEM = linux-g++ |
The following environment variables need to be set: |
G4LEDATA: points to low energy data base - G4EMLOW2.2 |
G4LEDATA: points to low energy data base - G4EMLOW2.3 |
setup for analysis with AIDA 3.0/Anaphe 5.0.5 for user with account |
on lxplus:
|
setenv G4ANALYSIS_USE 1
|
source /afs/cern.ch/sw/lhcxx/share/LHCXX/5.0.5/scripts/setupAnaphe.csh
setenv PATH ${PATH}:/afs/cern.ch/sw/lhcxx/share/LHCXX/5.0.5/scripts/ |
setup for analysis: AIDA 3.2.1, PI 1.2.1 |
Please take a look to the Anaphe/Lizard web page |
http://anaphe.web.cern.ch/anaphe
for more info |
Users can download the analysis tools from:
|
http://aida.freehep.org/
http://www.cern.ch/PI |
------------------------------------------------------------------------
----> 3.How to run the example. |
@@ -108,4 +103,4 @@ a macro is provided ad example of visualisation: VisualisationMacro.mac|
for comments, advices, doubts and questions: guatelli@ge.infn.it
for more info http://www.ge.infn.it/geant4/examples/index.html
last modified: Susanna Guatelli 11/3/2004
last modified: Susanna Guatelli 14/5/2004
examples/advanced/brachytherapy/src/BrachyAnalysisManager.cc
+2 -2
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@@ -29,8 +29,8 @@
// * *
// *******************************
//
// $Id: BrachyAnalysisManager.cc,v 1.13 2004/03/11 15:38:42 guatelli Exp $
// GEANT4 tag $Name: geant4-06-01 $
// $Id: BrachyAnalysisManager.cc,v 1.14 2004/05/13 14:47:46 guatelli Exp $
// GEANT4 tag $Name: geant4-06-02 $
//
#ifdef G4ANALYSIS_USE
#include <stdlib.h>
examples/advanced/brachytherapy/src/BrachyDetectorConstruction.cc
+31 -25
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@@ -34,8 +34,8 @@
// * *
// ****************************************
//
// $Id: BrachyDetectorConstruction.cc,v 1.24 2004/03/11 16:05:02 guatelli Exp $
// GEANT4 tag $Name: geant4-06-01 $
// $Id: BrachyDetectorConstruction.cc,v 1.25 2004/05/13 14:47:46 guatelli Exp $
// GEANT4 tag $Name: geant4-06-02 $
//
#include "BrachyPhantomROGeometry.hh"
#include "BrachyPhantomSD.hh"
@@ -101,7 +101,7 @@ BrachyDetectorConstruction::BrachyDetectorConstruction(G4String &SDName)
factory = new BrachyFactoryIr();
pMaterial= new BrachyMaterial();
pMaterial = new BrachyMaterial();
}
@@ -115,9 +115,9 @@ BrachyDetectorConstruction::~BrachyDetectorConstruction()
G4VPhysicalVolume* BrachyDetectorConstruction::Construct()
{
pMaterial-> DefineMaterials();
pMaterial -> DefineMaterials();
ConstructPhantom();
factory->CreateSource(PhantomPhys);
factory -> CreateSource(PhantomPhys); //Build the source inside the phantom
ConstructSensitiveDetector();
return WorldPhys;
@@ -125,7 +125,8 @@ G4VPhysicalVolume* BrachyDetectorConstruction::Construct()
void BrachyDetectorConstruction::SwitchBrachytherapicSeed()
{
factory->CleanSource();
factory -> CleanSource();
delete factory;
switch(detectorChoice)
{
@@ -142,11 +143,10 @@ void BrachyDetectorConstruction::SwitchBrachytherapicSeed()
factory = new BrachyFactoryIr();
break;
}
factory->CreateSource(PhantomPhys);
factory -> CreateSource(PhantomPhys);
// Notify run manager that the new geometry has been built
G4RunManager::GetRunManager()->DefineWorldVolume( WorldPhys );
G4RunManager::GetRunManager() -> DefineWorldVolume( WorldPhys );
}
void BrachyDetectorConstruction::SelectBrachytherapicSeed(G4String val)
@@ -176,28 +176,32 @@ void BrachyDetectorConstruction::ConstructPhantom()
{
G4Colour lblue (0.0, 0.0, .75);
G4Material* air=pMaterial->GetMat("Air") ;
G4Material* water=pMaterial->GetMat("Water");
G4Material* air = pMaterial -> GetMat("Air") ;
G4Material* water = pMaterial -> GetMat("Water");
ComputeDimVoxel();
// World volume
World = new G4Box("World",Worldx,Worldy,Worldz);
WorldLog = new G4LogicalVolume(World,air,"WorldLog",0,0,0);
WorldPhys = new G4PVPlacement(0,G4ThreeVector(),"WorldPhys",WorldLog,0,false,0);
WorldPhys = new G4PVPlacement(0,G4ThreeVector(),
"WorldPhys",WorldLog,0,false,0);
// Water Box
Phantom = new G4Box("Phantom",phantomDimensionX,phantomDimensionY,phantomDimensionZ);
Phantom = new G4Box("Phantom",phantomDimensionX,phantomDimensionY,
phantomDimensionZ);
PhantomLog = new G4LogicalVolume(Phantom,water,"PhantomLog",0,0,0);
PhantomPhys = new G4PVPlacement(0,G4ThreeVector(),"PhantomPhys",PhantomLog,WorldPhys,false,0);
PhantomPhys = new G4PVPlacement(0,G4ThreeVector(),
"PhantomPhys",PhantomLog,
WorldPhys,false,0);
WorldLog->SetVisAttributes (G4VisAttributes::Invisible);
WorldLog -> SetVisAttributes (G4VisAttributes::Invisible);
G4VisAttributes* simpleBoxVisAtt= new G4VisAttributes(lblue);
simpleBoxVisAtt->SetVisibility(true);
simpleBoxVisAtt->SetForceWireframe(true);
G4VisAttributes* simpleBoxVisAtt = new G4VisAttributes(lblue);
simpleBoxVisAtt -> SetVisibility(true);
simpleBoxVisAtt -> SetForceWireframe(true);
PhantomLog->SetVisAttributes(simpleBoxVisAtt);
PhantomLog -> SetVisAttributes(simpleBoxVisAtt);
}
void BrachyDetectorConstruction::ConstructSensitiveDetector()
@@ -209,11 +213,13 @@ void BrachyDetectorConstruction::ConstructSensitiveDetector()
{
phantomSD = new BrachyPhantomSD(sensitiveDetectorName);
G4String ROGeometryName = "PhantomROGeometry";
phantomROGeometry = new BrachyPhantomROGeometry(ROGeometryName,phantomDimensionX,phantomDimensionZ,numberOfVoxelsAlongX,numberOfVoxelsAlongZ);
phantomROGeometry->BuildROGeometry();
phantomSD->SetROgeometry(phantomROGeometry);
pSDManager->AddNewDetector(phantomSD);
PhantomLog->SetSensitiveDetector(phantomSD);
phantomROGeometry = new BrachyPhantomROGeometry(ROGeometryName,
phantomDimensionX,phantomDimensionZ,
numberOfVoxelsAlongX,numberOfVoxelsAlongZ);
phantomROGeometry -> BuildROGeometry();
phantomSD -> SetROgeometry(phantomROGeometry);
pSDManager -> AddNewDetector(phantomSD);
PhantomLog -> SetSensitiveDetector(phantomSD);
}
}
@@ -248,7 +254,7 @@ void BrachyDetectorConstruction::SetPhantomMaterial(G4String materialChoice)
if (pttoMaterial)
{
phantomAbsorberMaterial = pttoMaterial;
PhantomLog->SetMaterial(pttoMaterial);
PhantomLog -> SetMaterial(pttoMaterial);
PrintDetectorParameters();
}
else
examples/advanced/brachytherapy/src/BrachyPhantomROGeometry.cc
+3 -3
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@@ -30,8 +30,8 @@
// * *
// ************************************
//
// $Id: BrachyPhantomROGeometry.cc,v 1.8 2004/03/11 15:38:43 guatelli Exp $
// GEANT4 tag $Name: geant4-06-01 $
// $Id: BrachyPhantomROGeometry.cc,v 1.9 2004/05/13 14:47:46 guatelli Exp $
// GEANT4 tag $Name: geant4-06-02 $
//
#include "BrachyPhantomROGeometry.hh"
#include "BrachyDummySD.hh"
@@ -177,7 +177,7 @@ G4VPhysicalVolume* BrachyPhantomROGeometry::Build()
numberOfVoxelsAlongZ,
voxelXThickness);
BrachyDummySD *dummySD = new BrachyDummySD;
ROPhantomYDivisionLog->SetSensitiveDetector(dummySD);
ROPhantomYDivisionLog -> SetSensitiveDetector(dummySD);
return ROWorldPhys;
}
examples/advanced/brachytherapy/src/BrachyPhantomSD.cc
+23 -25
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@@ -30,8 +30,8 @@
// * *
// ********************************
//
// $Id: BrachyPhantomSD.cc,v 1.7 2004/03/11 16:05:03 guatelli Exp $
// GEANT4 tag $Name: geant4-06-01 $
// $Id: BrachyPhantomSD.cc,v 1.8 2004/05/13 14:47:46 guatelli Exp $
// GEANT4 tag $Name: geant4-06-02 $
//
#include "BrachyPhantomSD.hh"
#include "BrachyPhantomHit.hh"
@@ -72,34 +72,32 @@ G4bool BrachyPhantomSD::ProcessHits(G4Step* aStep, G4TouchableHistory* ROhist)
G4double energyDeposit = aStep->GetTotalEnergyDeposit();
if(energyDeposit == 0.)
return false;
// Read Voxel indexes: i is the x index, k is the z index
G4int k = ROhist->GetReplicaNumber(1);
G4int i = ROhist->GetReplicaNumber(2);
G4int j = ROhist->GetReplicaNumber();
G4int numberOfVoxelZ = 300;
G4double voxelWidthZ = 1. *mm;
G4double x = (-numberOfVoxelZ+1+2*i)*voxelWidthZ/2;
G4double y = (- numberOfVoxelZ+1+2*j)*voxelWidthZ/2;
G4double z = (- numberOfVoxelZ+1+2*k)*voxelWidthZ/2;
if(energyDeposit != 0)
if(energyDeposit != 0)
{
#ifdef G4ANALYSIS_USE
BrachyAnalysisManager* analysis =
BrachyAnalysisManager::getInstance();
analysis -> FillNtupleWithEnergy(x,y,z,energyDeposit);
if (y<0.8*mm && y> -0.8*mm)
{
analysis -> FillHistogramWithEnergy(x,z,energyDeposit/MeV);
// Read Voxel indexes: i is the x index, k is the z index
G4int k = ROhist->GetReplicaNumber(1);
G4int i = ROhist->GetReplicaNumber(2);
G4int j = ROhist->GetReplicaNumber();
G4int numberOfVoxelZ = 300;
G4double voxelWidthZ = 1. *mm;
G4double x = (-numberOfVoxelZ+1+2*i)*voxelWidthZ/2;
G4double y = (- numberOfVoxelZ+1+2*j)*voxelWidthZ/2;
G4double z = (- numberOfVoxelZ+1+2*k)*voxelWidthZ/2;
BrachyAnalysisManager* analysis =
BrachyAnalysisManager::getInstance();
analysis -> FillNtupleWithEnergy(x,y,z,energyDeposit);
if (y<0.8*mm && y> -0.8*mm)
{
analysis -> FillHistogramWithEnergy(x,z,energyDeposit/MeV);
if (z<0.8*mm && z> -0.8*mm)
analysis -> DoseDistribution(x,energyDeposit/MeV);
}
if (z<0.8*mm && z> -0.8*mm)
analysis -> DoseDistribution(x,energyDeposit/MeV);
}
#endif
}
return true;