lars/geant4
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

Import Geant4 11.2.0.beta source tree

Browse Source
This commit is contained in:
Gabriele Cosmo
2023-06-30 09:09:57 +02:00
parent aef78ca386
commit dd1f179cda
3780 changed files with 212808 additions and 142780 deletions
Download Patch File Download Diff File Expand all files Collapse all files
examples/advanced/CMakeLists.txt
+1
View File
@@ -11,6 +11,7 @@ find_package(ROOT QUIET)
add_subdirectory(air_shower)
add_subdirectory(amsEcal)
add_subdirectory(brachytherapy)
add_subdirectory(stim_pixe_tomography)
if(Geant4_gdml_FOUND)
add_subdirectory(ChargeExchangeMC)
examples/advanced/CaTS/CaTS.out
+22 -14
View File
@@ -38,7 +38,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -188,7 +188,7 @@ eBrem: for e- XStype:4 SubType=3
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -220,7 +220,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -252,7 +252,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -265,7 +265,6 @@ ionIoni: for GenericIon XStype:3 SubType=2
dE/dx and range tables from 100 eV to 100 TeV in 84 bins
Lambda tables from threshold to 100 TeV, 7 bins/decade, spline: 1
StepFunction=(0.2, 0.1 mm), integ: 3, fluct: 1, linLossLim= 0.02
Stopping Power data for 17 ion/material pairs
===== EM models for the G4Region DefaultRegionForTheWorld ======
BraggIon : Emin= 0 eV Emax= 2 MeV
BetheBloch : Emin= 2 MeV Emax= 100 TeV
@@ -311,7 +310,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -343,7 +342,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -375,7 +374,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -407,7 +406,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -439,7 +438,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -471,7 +470,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -503,7 +502,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -888,12 +887,21 @@ CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
================================================================
=======================================================================
====== Pre-compound/De-excitation Physics Parameters ========
====== Geant4 Native Pre-compound Model Parameters ========
=======================================================================
Type of pre-compound inverse x-section 3
Pre-compound model active 1
Pre-compound excitation low energy 100 keV
Pre-compound excitation high energy 30 MeV
Angular generator for pre-compound model 1
Use NeverGoBack option for pre-compound model 0
Use SoftCutOff option for pre-compound model 0
Use CEM transitions for pre-compound model 1
Use GNASH transitions for pre-compound model 0
Use HETC submodel for pre-compound model 0
=======================================================================
====== Nuclear De-excitation Module Parameters ========
=======================================================================
Type of de-excitation inverse x-section 3
Type of de-excitation factory Evaporation+GEM
Number of de-excitation channels 68
@@ -911,4 +919,4 @@ Correlated gamma emission flag 0
Max 2J for sampling of angular correlations 10
=======================================================================
writing Event: 0
TimeTotal> 5.254 2.780
TimeTotal> 3.700 2.610
examples/advanced/ChargeExchangeMC/ChargeExchangeMC.out
+414 -454
View File
File diff suppressed because it is too large Load Diff
examples/advanced/HGCal_testbeam/testbeam_electron.out
+21 -13
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -1746,7 +1746,7 @@ eBrem: for e- XStype:4 SubType=3
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -1778,7 +1778,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -1810,7 +1810,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -1823,7 +1823,6 @@ ionIoni: for GenericIon XStype:3 SubType=2
dE/dx and range tables from 100 eV to 100 TeV in 84 bins
Lambda tables from threshold to 100 TeV, 7 bins/decade, spline: 1
StepFunction=(0.2, 0.1 mm), integ: 3, fluct: 1, linLossLim= 0.02
Stopping Power data for 17 ion/material pairs
===== EM models for the G4Region DefaultRegionForTheWorld ======
BraggIon : Emin= 0 eV Emax= 2 MeV
BetheBloch : Emin= 2 MeV Emax= 100 TeV
@@ -1869,7 +1868,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -1901,7 +1900,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -1933,7 +1932,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -1965,7 +1964,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -1997,7 +1996,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -2029,7 +2028,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -2061,7 +2060,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -2446,12 +2445,21 @@ CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
================================================================
=======================================================================
====== Pre-compound/De-excitation Physics Parameters ========
====== Geant4 Native Pre-compound Model Parameters ========
=======================================================================
Type of pre-compound inverse x-section 3
Pre-compound model active 1
Pre-compound excitation low energy 100 keV
Pre-compound excitation high energy 30 MeV
Angular generator for pre-compound model 1
Use NeverGoBack option for pre-compound model 0
Use SoftCutOff option for pre-compound model 0
Use CEM transitions for pre-compound model 1
Use GNASH transitions for pre-compound model 0
Use HETC submodel for pre-compound model 0
=======================================================================
====== Nuclear De-excitation Module Parameters ========
=======================================================================
Type of de-excitation inverse x-section 3
Type of de-excitation factory Evaporation+GEM
Number of de-excitation channels 68
examples/advanced/ICRP110_HumanPhantoms/CMakeLists.txt
+6 -1
View File
@@ -34,11 +34,14 @@ file(GLOB headers ${PROJECT_SOURCE_DIR}/include/*.hh)
# Add the executable, and link it to the Geant4 libraries
#
add_executable(ICRP110phantoms ICRP110phantoms.cc ${sources} ${headers})
add_executable(ICRP110standalone ICRP110standalone.cc ${sources} ${headers})
target_link_libraries(ICRP110phantoms ${Geant4_LIBRARIES} )
target_link_libraries(ICRP110standalone ${Geant4_LIBRARIES} )
# Depend on data for runtime
add_dependencies(ICRP110phantoms ICRPdata)
add_dependencies(ICRP110standalone ICRPdata)
#----------------------------------------------------------------------------
# Copy all scripts to the build directory, i.e. the directory in which we
@@ -46,7 +49,7 @@ add_dependencies(ICRP110phantoms ICRPdata)
# relies on these scripts being in the current working directory.
#
set(ICRPphantoms_SCRIPTS
female.in female_head.in female_trunk.in male.in male_head.in male_trunk.in vis.mac primary.mac ColourMap.dat openGLVis.mac g4views/g4_00.g4view g4views/g4_01.g4view
female.in female_head.in female_trunk.in male.in male_head.in male_trunk.in vis.mac primary.mac ColourMap.dat openGLVis.mac g4views/g4_00.g4view g4views/g4_01.g4view standalone.mac
# ICRPdata/Data.dat
# "ICRPdata/ICRP110_g4dat/AF/*.g4dat"
# "ICRPdata/ICRP110_g4dat/AM/*.g4dat"
@@ -82,9 +85,11 @@ ExternalProject_Add(ICRPdata
# (this avoids the need of typing the program name after make)
#
add_custom_target(ICRPphantoms DEPENDS phantom)
add_custom_target(ICRPstandalone DEPENDS phantom)
#----------------------------------------------------------------------------
# Install the executable to 'bin' directory under CMAKE_INSTALL_PREFIX
#
install(TARGETS ICRP110phantoms DESTINATION bin)
install(TARGETS ICRP110standalone DESTINATION bin)
examples/advanced/ICRP110_HumanPhantoms/History
+14
View File
@@ -4,6 +4,20 @@ See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
which **must** added in reverse chronological order (newest at the top). It must **not**
be used as a substitute for writing good git commit messages!
## 2023-03-21 John Allison (ICRP110Phantoms-V11-01-01)
- standalone.mac: Disable auto refresh *before* creating scene.
- For auto-refresh viewers, without this change the viewer attempts
to draw the detector with the default view parameters, and in
the case of this phantom, it overwhelms the graphics system.
- This phantom should be displayed with special mesh rendering.
## 2023-01-10 John Allison (ICRP110Phantoms-V11-01-00)
- Introduce ICRP110standalone.
- "make" builds two executables - ICRP110phantoms and ICRP110standalone.
- ICRP110standalone allows you to visualise the phantom without the
overhead of the run manager and initialising all the physics tables.
Of course, you cannot run or visualise trajectories.
## 2022-06-02 Susanna Guatelli (ICRP110Phantoms-V11-00-01)
- Error reading the first voxels (in x=0, y=0) corrected
- Migration to features of C++11/14/17
examples/advanced/ICRP110_HumanPhantoms/ICRP110Phantoms.out
+26 -14
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -46,7 +46,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -300,7 +302,7 @@ ePairProd: for e- XStype:1 SubType=4
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -340,7 +342,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -372,7 +374,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -458,7 +460,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -490,7 +492,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -522,7 +524,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -554,7 +556,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -586,7 +588,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
NeutronHP: /Capture file for Z = 6, A = 12 is not found and NeutronHP will use /cvmfs/geant4.cern.ch/share/data/G4NDL4.7/Capture/CrossSection/6_nat_Carbon
@@ -604,6 +606,7 @@ NeutronHP: /Elastic file for Z = 6, A = 12 is not found and NeutronHP will use /
ProduceFissionFragments ? 0
UseWendtFissionModel ? 0
UseNRESP71Model ? 0
UseDBRC ? 0
=======================================================
@@@ G4ParticleHPInelastic instantiated for particle neutron data directory variable is G4NEUTRONHPDATA pointing to /cvmfs/geant4.cern.ch/share/data/G4NDL4.7/Inelastic
@@ -637,7 +640,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -669,7 +672,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
======================================================================
@@ -1078,12 +1081,21 @@ Threshold for very long decay time at rest 3.171e+10 y
================================================================
=======================================================================
====== Pre-compound/De-excitation Physics Parameters ========
====== Geant4 Native Pre-compound Model Parameters ========
=======================================================================
Type of pre-compound inverse x-section 3
Pre-compound model active 1
Pre-compound excitation low energy 100 keV
Pre-compound excitation high energy 30 MeV
Angular generator for pre-compound model 1
Use NeverGoBack option for pre-compound model 0
Use SoftCutOff option for pre-compound model 0
Use CEM transitions for pre-compound model 1
Use GNASH transitions for pre-compound model 0
Use HETC submodel for pre-compound model 0
=======================================================================
====== Nuclear De-excitation Module Parameters ========
=======================================================================
Type of de-excitation inverse x-section 3
Type of de-excitation factory Evaporation+GEM
Number of de-excitation channels 68
@@ -1146,7 +1158,7 @@ Reading AM_organs.dat
Reading OrganMasses.dat
NOrganIDs: 142
Writing output to ICRP110.out
Total energy deposited over all Organs within the Phantom is 1.47643e-09 J
Total absorbed dose over all phantom organs is 3.47423e-09 Gy
Total energy deposited over all Organs within the Phantom is 1.4709e-09 J
Total absorbed dose over all phantom organs is 3.00768e-09 Gy
Graphics systems deleted.
Visualization Manager deleting...
examples/advanced/ICRP110_HumanPhantoms/ICRP110standalone.cc
+65
View File
@@ -0,0 +1,65 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
/// \file visualization/standalone/standalone.cc
/// \brief Main program of the visualization/standalone example
//
//
//
//
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
#include "globals.hh"
#include "G4VisExecutive.hh"
#include "G4VisExtent.hh"
#include "G4UImanager.hh"
#include "G4UIExecutive.hh"
#include "G4SystemOfUnits.hh"
#include "ICRP110StandaloneVisAction.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
int main(int argc,char** argv) {
G4UIExecutive* ui = new G4UIExecutive(argc, argv);
G4VisManager* visManager = new G4VisExecutive;
visManager->RegisterRunDurationUserVisAction
("ICRP110_HumanPhantoms standalone example",
new ICRP110StandaloneVisAction,
G4VisExtent(-1*m,1*m,-1*m,1*m,-1*m,1*m));
visManager->Initialize ();
G4UImanager::GetUIpointer()->ApplyCommand ("/control/execute standalone.mac");
ui->SessionStart();
delete ui;
delete visManager;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
examples/advanced/ICRP110_HumanPhantoms/OrganDoses.out
+37 -43
View File
@@ -2,37 +2,31 @@
--------------------------------
OrganID Edep (J) Dose (Gy)
--------------------------------
4 | 2.83284e-12 9.97129e-11
9 | 3.24562e-13 3.81838e-10
26 | 3.64795e-10 6.48122e-10
27 | 2.54909e-10 5.65134e-10
40 | 2.88523e-15 3.90424e-14
47 | 5.95845e-12 5.7894e-11
48 | 2.25479e-12 3.06566e-11
61 | 5.45841e-10 3.76442e-10
69 | 3.38154e-20 4.61329e-18
102 | 1.872e-20 3.13043e-18
106 | 8.40322e-11 6.90027e-11
116 | 1.40393e-10 1.33897e-10
120 | 1.98869e-11 4.68036e-10
121 | 2.25296e-11 5.30234e-10
122 | 3.23132e-11 1.10912e-10
141 | 3.57028e-13 2.31386e-12
4 | 1.02241e-12 3.59875e-11
26 | 3.57659e-10 6.35443e-10
27 | 2.69866e-10 5.98293e-10
39 | 5.73388e-13 7.53269e-12
40 | 7.39457e-13 1.00062e-11
47 | 5.37409e-15 5.22162e-14
61 | 5.27772e-10 3.63981e-10
106 | 6.89286e-11 5.66005e-11
116 | 1.62874e-10 1.55339e-10
120 | 1.77526e-11 4.17807e-10
121 | 2.52684e-11 5.9469e-10
122 | 3.84415e-11 1.31947e-10
141 | 3.10958e-20 2.01528e-19
----------------------------------------------------------------------------
-------------------------------ORGAN INFO-----------------------------------
-----------------(of organs where edep/dose was recorded)-------------------
----------------------------------------------------------------------------
ID Organ Name Material ID Density (g/cm^3)
4 Posterior nasal passage down to larynx (ET2) 45 1.030
9 Blood vessels, head 28 1.060
26 Cranium, cortical 2 1.920
27 Cranium, spongiosa 8 1.157
39 Mandible, cortical 2 1.920
40 Mandible, spongiosa 13 1.228
47 Cervical spine, cortical 2 1.920
48 Cervical spine, spongiosa 17 1.050
61 Brain 32 1.050
69 Eye bulb, right 34 1.050
102 Lymphatic nodes, head 47 1.030
106 Muscle, head 29 1.050
116 Residual tissue, head 49 0.950
120 Salivary glands, left 45 1.030
@@ -40,8 +34,8 @@ ID Organ Name Material ID Density (g/cm^3)
122 Skin, head 27 1.090
141 Phantom Top/Bottom Skin Layer
Total Edep over all organs = 1.47643e-09 J
Total dose absorbed over all organs = 3.47423e-09 Gy
Total Edep over all organs = 1.4709e-09 J
Total dose absorbed over all organs = 3.00768e-09 Gy
----------------------------------------------------------------------------
----------------ORGAN ENERGY DEPOSITIONS AND ABSORBED DOSE------------------
@@ -50,16 +44,16 @@ Total dose absorbed over all organs = 3.47423e-09 Gy
----------------------------------------------------------------------------
OrganID Edep (J) Dose (Gy)
-------------------------------
0 | 1.57913e-11 0
0 | 1.18105e-11 0
1 | 0 0
2 | 0 0
3 | 0 0
4 | 2.83284e-12 9.97129e-11
4 | 1.02241e-12 3.59875e-11
5 | 0 0
6 | 0 0
7 | 0 0
8 | 0 0
9 | 3.24562e-13 3.81838e-10
9 | 0 0
10 | 0 0
11 | 0 0
12 | 0 0
@@ -76,8 +70,8 @@ OrganID Edep (J) Dose (Gy)
23 | 0 0
24 | 0 0
25 | 0 0
26 | 3.64795e-10 6.48122e-10
27 | 2.54909e-10 5.65134e-10
26 | 3.57659e-10 6.35443e-10
27 | 2.69866e-10 5.98293e-10
28 | 0 0
29 | 0 0
30 | 0 0
@@ -89,16 +83,16 @@ OrganID Edep (J) Dose (Gy)
36 | 0 0
37 | 0 0
38 | 0 0
39 | 0 0
40 | 2.88523e-15 3.90424e-14
39 | 5.73388e-13 7.53269e-12
40 | 7.39457e-13 1.00062e-11
41 | 0 0
42 | 0 0
43 | 0 0
44 | 0 0
45 | 0 0
46 | 0 0
47 | 5.95845e-12 5.7894e-11
48 | 2.25479e-12 3.06566e-11
47 | 5.37409e-15 5.22162e-14
48 | 0 0
49 | 0 0
50 | 0 0
51 | 0 0
@@ -111,7 +105,7 @@ OrganID Edep (J) Dose (Gy)
58 | 0 0
59 | 0 0
60 | 0 0
61 | 5.45841e-10 3.76442e-10
61 | 5.27772e-10 3.63981e-10
62 | 0 0
63 | 0 0
64 | 0 0
@@ -119,7 +113,7 @@ OrganID Edep (J) Dose (Gy)
66 | 0 0
67 | 0 0
68 | 0 0
69 | 3.38154e-20 4.61329e-18
69 | 0 0
70 | 0 0
71 | 0 0
72 | 0 0
@@ -152,11 +146,11 @@ OrganID Edep (J) Dose (Gy)
99 | 0 0
100 | 0 0
101 | 0 0
102 | 1.872e-20 3.13043e-18
102 | 0 0
103 | 0 0
104 | 0 0
105 | 0 0
106 | 8.40322e-11 6.90027e-11
106 | 6.89286e-11 5.66005e-11
107 | 0 0
108 | 0 0
109 | 0 0
@@ -166,13 +160,13 @@ OrganID Edep (J) Dose (Gy)
113 | 0 0
114 | 0 0
115 | 0 0
116 | 1.40393e-10 1.33897e-10
116 | 1.62874e-10 1.55339e-10
117 | 0 0
118 | 0 0
119 | 0 0
120 | 1.98869e-11 4.68036e-10
121 | 2.25296e-11 5.30234e-10
122 | 3.23132e-11 1.10912e-10
120 | 1.77526e-11 4.17807e-10
121 | 2.52684e-11 5.9469e-10
122 | 3.84415e-11 1.31947e-10
123 | 0 0
124 | 0 0
125 | 0 0
@@ -190,7 +184,7 @@ OrganID Edep (J) Dose (Gy)
137 | 0 0
138 | 0 0
139 | 0 0
140 | 2.72307e-14 1.36153e-10
141 | 3.57028e-13 2.31386e-12
Total energy depositied over all organs = 1.47643e-09 J
Total absorbed dose over all organs = 3.47423e-09 Gy
140 | 3.21175e-14 1.60588e-10
141 | 3.10958e-20 2.01528e-19
Total energy depositied over all organs = 1.4709e-09 J
Total absorbed dose over all organs = 3.00768e-09 Gy
examples/advanced/ICRP110_HumanPhantoms/README
+8 -2
View File
@@ -155,17 +155,23 @@ The AF human phantom is voxelised in x,y,z with 299 x 137 x 348 voxels with dime
- Compile and link to generate the executable (in your CMAKE build directory):
% make
This should make two executables - ICRP110phantoms and ICRP110standalone.
- Execute the application in 'interactive' mode with visualization:
% ./ICRP110phantoms
- Execute the "standalone" application in 'interactive' mode with visualization:
% ./ICRP110standalone
This allows you to visualise the phantom without the overhead of the run manager and initialising all the physics tables.
Of course, you cannot run or visualise trajectories.
- Execute the application in 'batch' mode from macro files:
% ./ICRP110phantoms female_head.in
-----------------------------
AVAILABLE MACRO FILES
-----------------------------
For the users convinience, macro files have been created which are designed to construct partial head
For the users convenience, macro files have been created which are designed to construct partial head
and trunk phantoms for both the male and female models. These macro files can be called upon in batch
mode when executing the application as specified above. If the user wishes to construct a completed/full
male or female phantom, the macros male.in and female.in can be called upon, respectively.
@@ -178,7 +184,7 @@ male or female phantom, the macros male.in and female.in can be called upon, res
'ICRPdata/FemaleData.dat' if the user wishes to create their own custom partial phantom section.
- openGLVis.mac : macro for visualisation with openGL.
- vis.mac (default) : Executed by default when the simulation is run in 'interactive' mode.
- primary.mac : Contains the definition of the primary radiation field.
- primary.mac : Contains the definition of the primary radiation field.
At the very top of the various '.in' macro files (pre-initialization), there are a series of commands
which define the sex and section of the phantom to create. These commands are listed below:
examples/advanced/ICRP110_HumanPhantoms/include/ICRP110StandaloneVisAction.hh
+47
View File
@@ -0,0 +1,47 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
/// \file visualization/standalone/include/ICRP110StandaloneVisAction.hh
/// \brief Definition of the ICRP110StandaloneVisAction class
//
//
#ifndef ICRP110STANDALONEVISACTION_HH
#define ICRP110STANDALONEVISACTION_HH
#include "G4VUserVisAction.hh"
class ICRP110PhantomConstruction;
class ICRP110StandaloneVisAction: public G4VUserVisAction {
public:
ICRP110StandaloneVisAction();
private:
void Draw() override;
ICRP110PhantomConstruction* fICRP110PhantomConstruction = nullptr;
};
#endif
examples/advanced/ICRP110_HumanPhantoms/src/ICRP110StandaloneVisAction.cc
+58
View File
@@ -0,0 +1,58 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
/// \file visualization/standalone/src/StandaloneVisAction.cc
/// \brief Implementation of the StandaloneVisAction class
//
//
#include "ICRP110StandaloneVisAction.hh"
#include "ICRP110PhantomConstruction.hh"
#include "ICRP110PhantomMessenger.hh"
#include "G4VVisManager.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
ICRP110StandaloneVisAction::ICRP110StandaloneVisAction()
{
fICRP110PhantomConstruction = new ICRP110PhantomConstruction;
new ICRP110PhantomMessenger(fICRP110PhantomConstruction);
// Don't instantiate the detector here - give time for /phantom/ commands.
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void ICRP110StandaloneVisAction::Draw() {
// Instantiate the detector "just in time" *after* possible /phantom/ commands.
// Instantiatie as "static" so that it is instantiated only once.
static auto theWorld = fICRP110PhantomConstruction->Construct();
G4VVisManager* pVisManager = G4VVisManager::GetConcreteInstance();
if (pVisManager) {
pVisManager->DrawGeometry(theWorld);
}
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
examples/advanced/ICRP110_HumanPhantoms/standalone.mac
+34
View File
@@ -0,0 +1,34 @@
/control/verbose 2
/phantom/setPhantomSection full
/vis/open OGL
# Disable auto refresh and quieten vis messages whilst scene and
# trajectories are established:
/vis/viewer/set/autoRefresh false
/vis/verbose errors
# The above creates a scene handler and a viewer but needs a scene.
# (Normally this would be /vis/drawVolume but we need to specialise.)
/vis/scene/create
/vis/scene/add/userAction
/vis/scene/add/axes
/vis/scene/add/scale
/vis/sceneHandler/attach
# View parameters
/vis/viewer/set/specialMeshRendering
/vis/viewer/set/hiddenMarker true
/vis/viewer/set/rotationStyle freeRotation
/vis/viewer/set/viewpointVector -0.47 -0.88 0.069
/vis/viewer/set/upVector 0.83 -0.42 0.37
/vis/viewer/zoomTo 3.4
# Re-establish auto refreshing and verbosity:
/vis/viewer/set/autoRefresh true
/vis/verbose warnings
# Try "/vis/viewer/interpolate g4views 1000 0", which runs a cutaway
# plane through the phantom.
# (See examples/extended/visualization/movies for how to create view
# files for interpolation.)
examples/advanced/ICRP110_HumanPhantoms/vis.mac
+2 -1
View File
@@ -99,7 +99,8 @@
#
# For file-based drivers, use this to create an empty detector view:
#/vis/viewer/flush
#Define the primary particles
#
# Define the primary particles
/control/execute primary.mac
#
# Try "/vis/viewer/interpolate g4views 1000 0", which runs a cutaway
examples/advanced/ICRP145_HumanPhantoms/CMakeLists.txt
+6
View File
@@ -34,10 +34,14 @@ file(GLOB headers ${PROJECT_SOURCE_DIR}/include/*.hh)
# Add the executable, and link it to the Geant4 libraries
#
add_executable(ICRP145phantoms ICRP145phantoms.cc ${sources} ${headers})
add_executable(ICRP145standalone ICRP145standalone.cc ${sources} ${headers})
target_link_libraries(ICRP145phantoms ${Geant4_LIBRARIES})
target_link_libraries(ICRP145standalone ${Geant4_LIBRARIES} )
# Depend on data for runtime
add_dependencies(ICRP145phantoms ICRP145data)
add_dependencies(ICRP145standalone ICRP145data)
#----------------------------------------------------------------------------
# Copy all scripts to the build directory. This is so that we can run the
@@ -49,6 +53,7 @@ set(EXTERNAL_SCRIPTS
init_vis.mac
source.mac
vis.mac
standalone.mac
)
foreach(_script ${EXTERNAL_SCRIPTS})
@@ -73,3 +78,4 @@ ExternalProject_Add(ICRP145data
# Install the executable to 'bin' directory under CMAKE_INSTALL_PREFIX
#
install(TARGETS ICRP145phantoms DESTINATION bin)
install(TARGETS ICRP145standalone DESTINATION bin)
examples/advanced/ICRP145_HumanPhantoms/History
+16
View File
@@ -5,6 +5,22 @@ which **must** added in reverse chronological order (newest at the top).
It must **not** be used as a substitute for writing good git commit messages!
-------------------------------------------------------------------------------
## 2023-04-08 Susanna Guatelli (ICRP145Phantoms-V11-01-02)
- Code revision in the TETRun class
## 2023-03-21 John Allison (ICRP145Phantoms-V11-01-01)
- standalone.mac: Disable auto refresh *before* creating scene.
- For auto-refresh viewers, without this change the viewer attempts
to draw the detector with the default view parameters, and in
the case of this phantom, it overwhelms the graphics system.
- This phantom should be displayed with special mesh rendering.
## 2023-03-19 John Allison (ICRP145Phantoms-V11-01-00)
- Introduce ICRP145standalone.
- "make" builds two executables - ICRP145phantoms and ICRP145standalone.
- ICRP145standalone allows you to visualise the phantom without the
overhead of the run manager and physics tables and geometry
initialisation. Of course, you cannot run or visualise trajectories.
## 2022-10-04 Gabriele Cosmo (ICRP145Phantoms-V11-00-03)
- Fixed compilation warnings on Intel-icx compiler for set but unused variable
examples/advanced/ICRP145_HumanPhantoms/ICRP145Phantoms.out
+24 -12
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -249,7 +249,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -436,7 +438,7 @@ ePairProd: for e- XStype:1 SubType=4
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100.000000 MeV to 100.000000 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin=100.000000 MeV Emax=100.000000 TeV
@@ -476,7 +478,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100.000000 MeV to 100.000000 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin=100.000000 MeV Emax=100.000000 TeV
@@ -508,7 +510,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100.000000 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin=0.000000 eV Emax=100.000000 TeV
@@ -594,7 +596,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100.000000 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin=0.000000 eV Emax=100.000000 TeV
@@ -626,7 +628,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100.000000 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin=0.000000 eV Emax=100.000000 TeV
@@ -658,7 +660,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin=0.000000 eV Emax=100.000000 TeV
@@ -690,7 +692,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100.000000 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin=0.000000 eV Emax=100.000000 TeV
@@ -722,7 +724,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin=0.000000 eV Emax=100.000000 TeV
NeutronHP: /Capture file for Z = 6, A = 12 is not found and NeutronHP will use /cvmfs/geant4.cern.ch/share/data/G4NDL4.7/Capture/CrossSection/6_nat_Carbon
@@ -740,6 +742,7 @@ NeutronHP: /Elastic file for Z = 6, A = 12 is not found and NeutronHP will use /
ProduceFissionFragments ? 0
UseWendtFissionModel ? 0
UseNRESP71Model ? 0
UseDBRC ? 0
=======================================================
@@@ G4ParticleHPInelastic instantiated for particle neutron data directory variable is G4NEUTRONHPDATA pointing to /cvmfs/geant4.cern.ch/share/data/G4NDL4.7/Inelastic
@@ -773,7 +776,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100.000000 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin=0.000000 eV Emax=100.000000 TeV
@@ -805,7 +808,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin=0.000000 eV Emax=100.000000 TeV
======================================================================
@@ -1214,12 +1217,21 @@ Threshold for very long decay time at rest 31709791983.76459 y
================================================================
=======================================================================
====== Pre-compound/De-excitation Physics Parameters ========
====== Geant4 Native Pre-compound Model Parameters ========
=======================================================================
Type of pre-compound inverse x-section 3
Pre-compound model active 1
Pre-compound excitation low energy 100.00000 keV
Pre-compound excitation high energy 30.00000 MeV
Angular generator for pre-compound model 1
Use NeverGoBack option for pre-compound model 0
Use SoftCutOff option for pre-compound model 0
Use CEM transitions for pre-compound model 1
Use GNASH transitions for pre-compound model 0
Use HETC submodel for pre-compound model 0
=======================================================================
====== Nuclear De-excitation Module Parameters ========
=======================================================================
Type of de-excitation inverse x-section 3
Type of de-excitation factory Evaporation+GEM
Number of de-excitation channels 68
examples/advanced/ICRP145_HumanPhantoms/ICRP145standalone.cc
+68
View File
@@ -0,0 +1,68 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
/// \file visualization/standalone/standalone.cc
/// \brief Main program of the visualization/standalone example
//
//
//
//
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
#include "globals.hh"
#include "G4VisExecutive.hh"
#include "G4VisExtent.hh"
#include "G4UImanager.hh"
#include "G4UIExecutive.hh"
#include "G4SystemOfUnits.hh"
#include "ICRP145StandaloneVisAction.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
int main(int argc,char** argv) {
G4UIExecutive* ui = new G4UIExecutive(argc, argv);
// sex: male/female: false/true
G4bool female = false;
G4VisManager* visManager = new G4VisExecutive;
visManager->RegisterRunDurationUserVisAction
("ICRP145_HumanPhantoms standalone example",
new ICRP145StandaloneVisAction(female,ui),
G4VisExtent(-1*m,1*m,-1*m,1*m,-1*m,1*m));
visManager->Initialize ();
G4UImanager::GetUIpointer()->ApplyCommand ("/control/execute standalone.mac");
ui->SessionStart();
delete ui;
delete visManager;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
examples/advanced/ICRP145_HumanPhantoms/README
+15 -3
View File
@@ -40,6 +40,7 @@ e-mail inquiries to: haeginh@hanyang.ac.kr, susanna@uow.edu.au, MRCP.ICRP@gmail.
% cd example_build
% cmake ..
% make
This should make two executables - ICRP145phantoms and ICRP145standalone.
2) How to run
@@ -78,14 +79,25 @@ e-mail inquiries to: haeginh@hanyang.ac.kr, susanna@uow.edu.au, MRCP.ICRP@gmail.
*** source organ can be defined by using -i option.
*** source particle and the particle energy can be specified
in source.mac file by using macro commands for G4ParticlGun (/gun/)
c) Notes
c) To see the phantom alone:
% ./ICRP145standalone
This allows you to visualise the phantom without the overhead of
the run manager and physics tables and geometry initialisation.
Of course, you cannot run or visualise trajectories.
d) Notes
- Regarding the interactive mode with visualisation:
* you can run the codes in interactive mode with visualisation by
omitting -m option.
* the memory required for the visualisation is ~35 GB when the code is
run on a single thread. (it is less than 10 GB in batch mode)
* with "special mesh rendering" (see vis.mac) the memory required
for the visualisation about 1.5 GB (without, it's ~35 GB!).
* original data takes about 3 GB, physics tables and geometry
voxelisation consume about 5 GB, so a typical app is about 10 GB.
* in interactive mode, user should start a run by using
/run/beamOn command. (Idle> /run/beamOn [number of events])
examples/advanced/ICRP145_HumanPhantoms/include/ICRP145StandaloneVisAction.hh
+51
View File
@@ -0,0 +1,51 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
/// \file visualization/standalone/include/ICRP145StandaloneVisAction.hh
/// \brief Definition of the ICRP145StandaloneVisAction class
//
//
#ifndef ICRP145STANDALONEVISACTION_HH
#define ICRP145STANDALONEVISACTION_HH
#include "G4VUserVisAction.hh"
#include "globals.hh"
class G4UIExecutive;
class TETDetectorConstruction;
class ICRP145StandaloneVisAction: public G4VUserVisAction {
public:
// sex: male/female: false/true
ICRP145StandaloneVisAction(G4bool sex, G4UIExecutive* ui);
private:
void Draw() override;
TETDetectorConstruction* fTETDetectorConstruction = nullptr;
};
#endif
examples/advanced/ICRP145_HumanPhantoms/include/TETRun.hh
+1
View File
@@ -64,5 +64,6 @@ public:
private:
EDEPMAP fEdepMap;
G4int fCollID;
};
#endif
examples/advanced/ICRP145_HumanPhantoms/src/ICRP145StandaloneVisAction.cc
+58
View File
@@ -0,0 +1,58 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
/// \file visualization/standalone/src/StandaloneVisAction.cc
/// \brief Implementation of the StandaloneVisAction class
//
//
#include "ICRP145StandaloneVisAction.hh"
#include "TETDetectorConstruction.hh"
#include "TETModelImport.hh"
#include "G4VVisManager.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
ICRP145StandaloneVisAction::ICRP145StandaloneVisAction(G4bool sex, G4UIExecutive* ui)
{
auto pTETModelImport = new TETModelImport(sex, ui);
fTETDetectorConstruction = new TETDetectorConstruction(pTETModelImport);
// Don't instantiate the detector here - give time for /phantom/ commands.
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void ICRP145StandaloneVisAction::Draw() {
// Instantiate the detector "just in time" *after* possible /phantom/ commands.
// Instantiatie as "static" so that it is instantiated only once.
static auto theWorld = fTETDetectorConstruction->Construct();
G4VVisManager* pVisManager = G4VVisManager::GetConcreteInstance();
if (pVisManager) {
pVisManager->DrawGeometry(theWorld);
}
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
examples/advanced/ICRP145_HumanPhantoms/src/TETRun.cc
+12 -14
View File
@@ -33,7 +33,7 @@
#include "TETRun.hh"
TETRun::TETRun()
:G4Run()
:G4Run(), fCollID(-1)
{}
TETRun::~TETRun()
@@ -43,19 +43,17 @@ TETRun::~TETRun()
void TETRun::RecordEvent(const G4Event* event)
{
auto fCollID
= G4SDManager::GetSDMpointer()->GetCollectionID("PhantomSD/eDep");
if(fCollID<0)
fCollID = G4SDManager::GetSDMpointer()->GetCollectionID("PhantomSD/eDep");
// Hits collections
//
G4HCofThisEvent* HCE = event->GetHCofThisEvent();
if(!HCE) return;
//G4THitsMap<G4double>* evtMap =
// static_cast<G4THitsMap<G4double>*>(HCE->GetHC(fCollID));
auto* evtMap = static_cast<G4THitsMap<G4double>*>(HCE->GetHC(fCollID));
// sum up the energy deposition and the square of it
for (auto itr : *evtMap->GetMap()) {
// Hits collections
//
G4HCofThisEvent* HCE = event->GetHCofThisEvent();
if(!HCE) return;
auto* evtMap = static_cast<G4THitsMap<G4double>*>(HCE->GetHC(fCollID));
// sum up the energy deposition and the square of it
for (auto itr : *evtMap->GetMap()) {
fEdepMap[itr.first].first += *itr.second; //sum
fEdepMap[itr.first].second += (*itr.second) * (*itr.second); //sum square
}
@@ -71,7 +69,7 @@ void TETRun::Merge(const G4Run* run)
fEdepMap[itr.first].second += itr.second.second;
}
G4Run::Merge(run);
G4Run::Merge(run);
}
examples/advanced/ICRP145_HumanPhantoms/standalone.mac
+52
View File
@@ -0,0 +1,52 @@
/control/verbose 2
/vis/open OGL
# Disable auto refresh and quieten vis messages whilst scene and
# trajectories are established:
/vis/viewer/set/autoRefresh false
/vis/verbose errors
# The above creates a scene handler and a viewer but needs a scene.
# (Normally this would be /vis/drawVolume but we need to specialise.)
/vis/scene/create
/vis/scene/add/userAction
/vis/sceneHandler/attach
# Decorations
# Axes, scale, etc.
/vis/scene/add/scale # Simple scale line
/vis/scene/add/axes 50 0 -60 20 cm # Simple axes: x=red, y=green, z=blue.
/vis/scene/add/eventID # Drawn at end of event
/vis/scene/add/date # Date stamp
#
# Frame
/vis/set/colour red
/vis/set/lineWidth 2
/vis/scene/add/frame # Simple frame around the view
#/vis/set/colour # Revert to default colour (white)
/vis/set/lineWidth # Revert to default line width (1.)
# To get nice view
# Make the "World" box invisible
/vis/geometry/set/visibility worldLogical 0 false
/vis/geometry/set/visibility phantomLogical 0 false
# View parameters
/vis/viewer/set/specialMeshRendering
/vis/viewer/set/specialMeshRenderingOption surfaces
/vis/viewer/set/style surface
/vis/viewer/set/hiddenMarker true
/vis/viewer/set/background 1 1 1 1
#
# Specify view angle:
/vis/viewer/set/upVector 0 0 1
/vis/viewer/set/lightsVector -1 0 0
/vis/viewer/zoomTo 2
#/vis/viewer/set/viewpointVector -0.5 -1 0.3
/vis/viewer/set/viewpointVector 0 -1 0
/vis/viewer/set/targetPoint 0 0 0 mm
#
# Re-establish auto refreshing and verbosity:
/vis/viewer/set/autoRefresh true
/vis/verbose warnings
examples/advanced/STCyclotron/STCyclotron.out
+19 -7
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -539,10 +539,22 @@ G4GeometryManager::ReportVoxelStats -- Voxel Statistics
... create file : SolidTargetCyclotron.root - done
... open analysis file : SolidTargetCyclotron.root - done
... open analysis file : SolidTargetCyclotron.root - done
-------- WWWW ------- G4Exception-START -------- WWWW -------
*** G4Exception : had012
issued by : G4HadronicProcess:CheckResult()
Warning: Bad energy non-conservation detected, will re-sample the interaction
Process / Model: protonInelastic / ParticleHPInelastic
Primary: proton (2212), E= 949.004, target nucleus (78, 195)
E(initial - final) = -360327 MeV.
*** This is just a warning message. ***
-------- WWWW -------- G4Exception-END --------- WWWW -------
Run terminated.
Run Summary
Number of events processed : 10
User=21.280000s Real=21.426749s Sys=0.000000s
User=20.430000s Real=20.615740s Sys=0.000000s
... write file : SolidTargetCyclotron.root - done
... close file : SolidTargetCyclotron.root - done
G4 kernel has come to Quit state.
@@ -558,24 +570,24 @@ G4SDManager deleted.
EventManager deleted.
Units table cleared.
TransportationManager deleted.
Total navigation history collections cleaned: 11
Total navigation history collections cleaned: 10
G4RNGHelper object is deleted.
================== Deleting memory pools ===================
Pool ID '20G4NavigationLevelRep', size : 0.0154 MB
Pool ID '20G4NavigationLevelRep', size : 0.0135 MB
Pool ID '24G4ReferenceCountedHandleIvE', size : 0.000961 MB
Pool ID '17G4DynamicParticle', size : 0.396 MB
Pool ID '17G4DynamicParticle', size : 0.484 MB
Pool ID '16G4SmartVoxelNode', size : 0.00192 MB
Pool ID '17G4SmartVoxelProxy', size : 0.000961 MB
Pool ID '7G4Event', size : 0.000961 MB
Pool ID '15G4PrimaryVertex', size : 0.000961 MB
Pool ID '17G4PrimaryParticle', size : 0.258 MB
Pool ID '7G4Track', size : 0.792 MB
Pool ID '7G4Track', size : 0.968 MB
Pool ID '18G4TouchableHistory', size : 0.000961 MB
Pool ID '15G4CountedObjectIvE', size : 0.000961 MB
Pool ID '17G4ReactionProduct', size : 0.00192 MB
Pool ID '10G4Fragment', size : 0.000961 MB
Number of memory pools allocated: 13 of which, static: 0
Dynamic pools deleted: 13 / Total memory freed: 1.5 MB
Dynamic pools deleted: 13 / Total memory freed: 1.7 MB
============================================================
G4Allocator objects are deleted.
UImanager deleted.
examples/advanced/air_shower/air_shower.out
+17 -16
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -106,7 +106,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -311,7 +313,7 @@ eBrem: for e- XStype:4 SubType=3
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -343,7 +345,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -375,7 +377,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -388,7 +390,6 @@ ionIoni: for GenericIon XStype:3 SubType=2
dE/dx and range tables from 100 eV to 100 TeV in 84 bins
Lambda tables from threshold to 100 TeV, 7 bins/decade, spline: 1
StepFunction=(0.2, 0.1 mm), integ: 3, fluct: 1, linLossLim= 0.02
Stopping Power data for 17 ion/material pairs
===== EM models for the G4Region DefaultRegionForTheWorld ======
BraggIon : Emin= 0 eV Emax= 2 MeV
BetheBloch : Emin= 2 MeV Emax= 100 TeV
@@ -434,7 +435,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -466,7 +467,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -498,7 +499,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -530,7 +531,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -562,7 +563,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -594,7 +595,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -626,7 +627,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -698,8 +699,8 @@ See commands in /vis/modeling/trajectories/ for other options.
ooo Run 0 starts (global).
--------- Ranlux engine status ---------
Initial seed = 1686681308
float_seed_table[] = 0.24429 0.19203 0.930385 0.579489 0.677383 0.853754 0.255059 0.124678 0.0119871 0.792396 0.137899 0.0594917 0.697128 0.895791 0.221125 0.205631 0.122251 0.805305 0.524881 0.656697 0.105557 0.780275 0.101231 0.763505
Initial seed = 1687915079
float_seed_table[] = 0.813233 0.868755 0.525554 0.630249 0.949336 0.741437 0.0196044 0.551251 0.788266 0.679422 0.587881 0.560283 0.230776 0.328666 0.33805 0.853895 0.901859 0.0414808 0.955325 0.413566 0.61962 0.565286 0.371511 0.667219
i_lag = 23, j_lag = 9
carry = 0, count24 = 0
luxury = 3 nskip = 199
@@ -710,7 +711,7 @@ mu- Mono Plane
Run terminated.
Run Summary
Number of events processed : 100
User=2.430000s Real=2.438739s Sys=0.000000s
User=2.000000s Real=2.013808s Sys=0.010000s
### Run 0 (global) ended.
Graphics systems deleted.
Visualization Manager deleting...
@@ -743,7 +744,7 @@ Pool ID '16G4HitsCollection', size : 0.000961 MB
Pool ID '7G4Track', size : 0.05 MB
Pool ID '18G4TouchableHistory', size : 0.000961 MB
Pool ID '15G4CountedObjectIvE', size : 0.000961 MB
Pool ID '15UltraOpticalHit', size : 0.00385 MB
Pool ID '15UltraOpticalHit', size : 0.00481 MB
Number of memory pools allocated: 14 of which, static: 0
Dynamic pools deleted: 14 / Total memory freed: 0.1 MB
============================================================
examples/advanced/amsEcal/run1.out
+96 -96
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -187,7 +187,7 @@ N=17 V[N]={906770732717044781, 629165745432651234, 1235682547346241386, 68420008
Run terminated.
Run Summary
Number of events processed : 10000
User=6.530000s Real=6.580281s Sys=0.000000s
User=5.930000s Real=5.952257s Sys=0.000000s
-------------------------------------------------------------
---> The calorimeter is 9 Modules
@@ -210,107 +210,107 @@ Run Summary
total Energy (rms/mean) visible Energy (rms/mean)
layer 1: 1.5564 MeV +- 2.687 MeV (1.7e+02 %) 163.84 keV +- 930.6 keV (5.7e+02 %)
layer 2: 1.5443 MeV +- 2.8 MeV (1.8e+02 %) 152.71 keV +- 755.6 keV (4.9e+02 %)
layer 3: 1.5492 MeV +- 2.225 MeV (1.4e+02 %) 167.34 keV +- 838.8 keV (5e+02 %)
layer 4: 1.5271 MeV +- 2.22 MeV (1.5e+02 %) 157.91 keV +- 915.3 keV (5.8e+02 %)
layer 5: 1.5234 MeV +- 2.301 MeV (1.5e+02 %) 156.6 keV +- 495.6 keV (3.2e+02 %)
layer 6: 1.545 MeV +- 2.417 MeV (1.6e+02 %) 162.72 keV +- 823.1 keV (5.1e+02 %)
layer 7: 1.5432 MeV +- 2.461 MeV (1.6e+02 %) 177.09 keV +- 1.213 MeV (6.9e+02 %)
layer 8: 1.5418 MeV +- 2.494 MeV (1.6e+02 %) 148.02 keV +- 297.7 keV (2e+02 %)
layer 9: 1.511 MeV +- 2.303 MeV (1.5e+02 %) 161.26 keV +- 873.6 keV (5.4e+02 %)
layer 10: 1.5273 MeV +- 2.369 MeV (1.6e+02 %) 147.78 keV +- 350.7 keV (2.4e+02 %)
layer 11: 1.5422 MeV +- 2.68 MeV (1.7e+02 %) 169.53 keV +- 1.314 MeV (7.7e+02 %)
layer 12: 1.4978 MeV +- 2.098 MeV (1.4e+02 %) 151.89 keV +- 375.4 keV (2.5e+02 %)
layer 13: 1.5257 MeV +- 2.119 MeV (1.4e+02 %) 154.54 keV +- 423.2 keV (2.7e+02 %)
layer 14: 1.5421 MeV +- 2.546 MeV (1.7e+02 %) 162.65 keV +- 836.2 keV (5.1e+02 %)
layer 15: 1.5218 MeV +- 2.251 MeV (1.5e+02 %) 157.32 keV +- 637 keV (4e+02 %)
layer 16: 1.5749 MeV +- 2.783 MeV (1.8e+02 %) 173.21 keV +- 872.6 keV (5e+02 %)
layer 17: 1.5075 MeV +- 1.961 MeV (1.3e+02 %) 149.84 keV +- 390.3 keV (2.6e+02 %)
layer 18: 1.5331 MeV +- 2.316 MeV (1.5e+02 %) 155.99 keV +- 739 keV (4.7e+02 %)
layer 19: 1.5089 MeV +- 2.008 MeV (1.3e+02 %) 153.51 keV +- 396.3 keV (2.6e+02 %)
layer 20: 1.5616 MeV +- 3.018 MeV (1.9e+02 %) 171.76 keV +- 1.076 MeV (6.3e+02 %)
layer 21: 1.5773 MeV +- 2.614 MeV (1.7e+02 %) 165.16 keV +- 686.3 keV (4.2e+02 %)
layer 22: 1.5263 MeV +- 2.17 MeV (1.4e+02 %) 167.71 keV +- 1.023 MeV (6.1e+02 %)
layer 23: 1.5215 MeV +- 2.074 MeV (1.4e+02 %) 150.17 keV +- 473.5 keV (3.2e+02 %)
layer 24: 1.5383 MeV +- 2.354 MeV (1.5e+02 %) 154.41 keV +- 573.1 keV (3.7e+02 %)
layer 25: 1.5615 MeV +- 2.501 MeV (1.6e+02 %) 166.75 keV +- 646.6 keV (3.9e+02 %)
layer 26: 1.509 MeV +- 2.102 MeV (1.4e+02 %) 155.12 keV +- 660.7 keV (4.3e+02 %)
layer 27: 1.5357 MeV +- 2.234 MeV (1.5e+02 %) 165.36 keV +- 892.8 keV (5.4e+02 %)
layer 28: 1.5344 MeV +- 2.329 MeV (1.5e+02 %) 152.07 keV +- 542.1 keV (3.6e+02 %)
layer 29: 1.5279 MeV +- 2.407 MeV (1.6e+02 %) 153.89 keV +- 569.3 keV (3.7e+02 %)
layer 30: 1.5291 MeV +- 2.588 MeV (1.7e+02 %) 154.49 keV +- 663.9 keV (4.3e+02 %)
layer 31: 1.5185 MeV +- 1.911 MeV (1.3e+02 %) 158.18 keV +- 613.4 keV (3.9e+02 %)
layer 32: 1.5022 MeV +- 2.039 MeV (1.4e+02 %) 162.11 keV +- 690.5 keV (4.3e+02 %)
layer 33: 1.5823 MeV +- 2.58 MeV (1.6e+02 %) 159.91 keV +- 784.2 keV (4.9e+02 %)
layer 34: 1.4905 MeV +- 1.792 MeV (1.2e+02 %) 156.86 keV +- 613.6 keV (3.9e+02 %)
layer 35: 1.5419 MeV +- 2.407 MeV (1.6e+02 %) 155.66 keV +- 806.6 keV (5.2e+02 %)
layer 36: 1.5441 MeV +- 2.557 MeV (1.7e+02 %) 154.06 keV +- 590.2 keV (3.8e+02 %)
layer 37: 1.5469 MeV +- 2.208 MeV (1.4e+02 %) 151.97 keV +- 357.2 keV (2.4e+02 %)
layer 38: 1.5355 MeV +- 2.427 MeV (1.6e+02 %) 161.09 keV +- 770.4 keV (4.8e+02 %)
layer 39: 1.5334 MeV +- 2.172 MeV (1.4e+02 %) 155.14 keV +- 674 keV (4.3e+02 %)
layer 40: 1.5473 MeV +- 2.632 MeV (1.7e+02 %) 147.67 keV +- 340.2 keV (2.3e+02 %)
layer 41: 1.5009 MeV +- 2.02 MeV (1.3e+02 %) 157.6 keV +- 443.3 keV (2.8e+02 %)
layer 42: 1.5722 MeV +- 2.568 MeV (1.6e+02 %) 154.51 keV +- 592.4 keV (3.8e+02 %)
layer 43: 1.543 MeV +- 2.625 MeV (1.7e+02 %) 156.24 keV +- 544.3 keV (3.5e+02 %)
layer 44: 1.5021 MeV +- 2.005 MeV (1.3e+02 %) 162.06 keV +- 656.1 keV (4e+02 %)
layer 45: 1.5386 MeV +- 2.344 MeV (1.5e+02 %) 159.85 keV +- 687 keV (4.3e+02 %)
layer 46: 1.5002 MeV +- 1.917 MeV (1.3e+02 %) 153.97 keV +- 436.7 keV (2.8e+02 %)
layer 47: 1.5385 MeV +- 2.359 MeV (1.5e+02 %) 155.47 keV +- 701.9 keV (4.5e+02 %)
layer 48: 1.5417 MeV +- 2.495 MeV (1.6e+02 %) 156.37 keV +- 716.3 keV (4.6e+02 %)
layer 49: 1.561 MeV +- 2.553 MeV (1.6e+02 %) 170.44 keV +- 1.172 MeV (6.9e+02 %)
layer 50: 1.5134 MeV +- 2.148 MeV (1.4e+02 %) 159.65 keV +- 572.4 keV (3.6e+02 %)
layer 51: 1.5349 MeV +- 2.29 MeV (1.5e+02 %) 160.48 keV +- 739 keV (4.6e+02 %)
layer 52: 1.5131 MeV +- 2.053 MeV (1.4e+02 %) 168.28 keV +- 852.8 keV (5.1e+02 %)
layer 53: 1.5452 MeV +- 2.306 MeV (1.5e+02 %) 158.53 keV +- 699 keV (4.4e+02 %)
layer 54: 1.538 MeV +- 2.229 MeV (1.4e+02 %) 159.63 keV +- 872.6 keV (5.5e+02 %)
layer 55: 1.5369 MeV +- 2.331 MeV (1.5e+02 %) 166.32 keV +- 774.8 keV (4.7e+02 %)
layer 56: 1.5216 MeV +- 2.13 MeV (1.4e+02 %) 156.03 keV +- 613.4 keV (3.9e+02 %)
layer 57: 1.5137 MeV +- 2.071 MeV (1.4e+02 %) 153.85 keV +- 508.1 keV (3.3e+02 %)
layer 58: 1.4985 MeV +- 1.845 MeV (1.2e+02 %) 157.54 keV +- 468.8 keV (3e+02 %)
layer 59: 1.5389 MeV +- 2.42 MeV (1.6e+02 %) 156.89 keV +- 651.1 keV (4.1e+02 %)
layer 60: 1.4922 MeV +- 1.502 MeV (1e+02 %) 152.86 keV +- 417.8 keV (2.7e+02 %)
layer 61: 1.5428 MeV +- 2.652 MeV (1.7e+02 %) 182.94 keV +- 1.355 MeV (7.4e+02 %)
layer 62: 1.4924 MeV +- 1.548 MeV (1e+02 %) 154.1 keV +- 746.2 keV (4.8e+02 %)
layer 63: 1.519 MeV +- 2.166 MeV (1.4e+02 %) 164.21 keV +- 743.8 keV (4.5e+02 %)
layer 64: 1.5099 MeV +- 2.123 MeV (1.4e+02 %) 156.3 keV +- 588.3 keV (3.8e+02 %)
layer 65: 1.5154 MeV +- 2.029 MeV (1.3e+02 %) 147.12 keV +- 353 keV (2.4e+02 %)
layer 66: 1.4972 MeV +- 1.901 MeV (1.3e+02 %) 150.69 keV +- 430.6 keV (2.9e+02 %)
layer 67: 1.4917 MeV +- 1.704 MeV (1.1e+02 %) 154.84 keV +- 523.5 keV (3.4e+02 %)
layer 68: 1.4987 MeV +- 2.094 MeV (1.4e+02 %) 157.36 keV +- 556.4 keV (3.5e+02 %)
layer 69: 1.5532 MeV +- 2.44 MeV (1.6e+02 %) 161.36 keV +- 696.9 keV (4.3e+02 %)
layer 70: 1.4953 MeV +- 2.043 MeV (1.4e+02 %) 153.45 keV +- 611.9 keV (4e+02 %)
layer 71: 1.5088 MeV +- 2.101 MeV (1.4e+02 %) 155.44 keV +- 544.2 keV (3.5e+02 %)
layer 72: 1.5165 MeV +- 1.937 MeV (1.3e+02 %) 156.97 keV +- 641.3 keV (4.1e+02 %)
layer 73: 1.5281 MeV +- 2.218 MeV (1.5e+02 %) 149.81 keV +- 369.6 keV (2.5e+02 %)
layer 74: 1.5062 MeV +- 1.906 MeV (1.3e+02 %) 155.97 keV +- 685.6 keV (4.4e+02 %)
layer 75: 1.4923 MeV +- 2.044 MeV (1.4e+02 %) 150.88 keV +- 316.1 keV (2.1e+02 %)
layer 76: 1.5399 MeV +- 2.348 MeV (1.5e+02 %) 148.1 keV +- 384.6 keV (2.6e+02 %)
layer 77: 1.5244 MeV +- 2.32 MeV (1.5e+02 %) 152.48 keV +- 440.6 keV (2.9e+02 %)
layer 78: 1.5058 MeV +- 2.086 MeV (1.4e+02 %) 152.7 keV +- 424.5 keV (2.8e+02 %)
layer 79: 1.531 MeV +- 2.237 MeV (1.5e+02 %) 164.93 keV +- 1.004 MeV (6.1e+02 %)
layer 80: 1.5383 MeV +- 2.311 MeV (1.5e+02 %) 156.9 keV +- 700.3 keV (4.5e+02 %)
layer 81: 1.5499 MeV +- 2.58 MeV (1.7e+02 %) 166.2 keV +- 858.6 keV (5.2e+02 %)
layer 82: 1.5327 MeV +- 2.137 MeV (1.4e+02 %) 161.77 keV +- 870.5 keV (5.4e+02 %)
layer 83: 1.5235 MeV +- 2.038 MeV (1.3e+02 %) 152.2 keV +- 509.5 keV (3.3e+02 %)
layer 84: 1.4889 MeV +- 1.979 MeV (1.3e+02 %) 148.2 keV +- 455.6 keV (3.1e+02 %)
layer 85: 1.5257 MeV +- 2.292 MeV (1.5e+02 %) 157.55 keV +- 787.1 keV (5e+02 %)
layer 86: 1.5151 MeV +- 2.276 MeV (1.5e+02 %) 172.36 keV +- 1.04 MeV (6e+02 %)
layer 87: 1.5074 MeV +- 1.965 MeV (1.3e+02 %) 162.06 keV +- 707.1 keV (4.4e+02 %)
layer 88: 1.5178 MeV +- 1.913 MeV (1.3e+02 %) 151.38 keV +- 373.2 keV (2.5e+02 %)
layer 89: 1.5282 MeV +- 2.468 MeV (1.6e+02 %) 157.97 keV +- 659.8 keV (4.2e+02 %)
layer 90: 1.5307 MeV +- 2.362 MeV (1.5e+02 %) 161.53 keV +- 839.4 keV (5.2e+02 %)
layer 1: 1.5909 MeV +- 2.656 MeV (1.7e+02 %) 176.1 keV +- 1.128 MeV (6.4e+02 %)
layer 2: 1.5646 MeV +- 2.609 MeV (1.7e+02 %) 167.36 keV +- 788.6 keV (4.7e+02 %)
layer 3: 1.5176 MeV +- 2.029 MeV (1.3e+02 %) 174.78 keV +- 1.196 MeV (6.8e+02 %)
layer 4: 1.5127 MeV +- 2.063 MeV (1.4e+02 %) 173.22 keV +- 820.6 keV (4.7e+02 %)
layer 5: 1.5389 MeV +- 2.57 MeV (1.7e+02 %) 171.14 keV +- 903.5 keV (5.3e+02 %)
layer 6: 1.5521 MeV +- 2.746 MeV (1.8e+02 %) 170.26 keV +- 1.105 MeV (6.5e+02 %)
layer 7: 1.5055 MeV +- 2.023 MeV (1.3e+02 %) 177.05 keV +- 1.261 MeV (7.1e+02 %)
layer 8: 1.5098 MeV +- 2.372 MeV (1.6e+02 %) 156.45 keV +- 435.1 keV (2.8e+02 %)
layer 9: 1.5554 MeV +- 2.47 MeV (1.6e+02 %) 153.44 keV +- 611.2 keV (4e+02 %)
layer 10: 1.4966 MeV +- 2.051 MeV (1.4e+02 %) 151.04 keV +- 324.5 keV (2.1e+02 %)
layer 11: 1.5293 MeV +- 2.481 MeV (1.6e+02 %) 162.76 keV +- 809.1 keV (5e+02 %)
layer 12: 1.5518 MeV +- 2.481 MeV (1.6e+02 %) 150.9 keV +- 366.9 keV (2.4e+02 %)
layer 13: 1.5108 MeV +- 1.998 MeV (1.3e+02 %) 147.5 keV +- 335 keV (2.3e+02 %)
layer 14: 1.5573 MeV +- 2.665 MeV (1.7e+02 %) 165.67 keV +- 1.067 MeV (6.4e+02 %)
layer 15: 1.5478 MeV +- 2.612 MeV (1.7e+02 %) 156.37 keV +- 463.5 keV (3e+02 %)
layer 16: 1.5019 MeV +- 1.916 MeV (1.3e+02 %) 165.04 keV +- 1.057 MeV (6.4e+02 %)
layer 17: 1.4947 MeV +- 2.165 MeV (1.4e+02 %) 166.16 keV +- 991.1 keV (6e+02 %)
layer 18: 1.5238 MeV +- 1.956 MeV (1.3e+02 %) 165.19 keV +- 660.6 keV (4e+02 %)
layer 19: 1.5238 MeV +- 2.303 MeV (1.5e+02 %) 160.56 keV +- 858.8 keV (5.3e+02 %)
layer 20: 1.5623 MeV +- 2.44 MeV (1.6e+02 %) 155.17 keV +- 615.4 keV (4e+02 %)
layer 21: 1.5085 MeV +- 2.136 MeV (1.4e+02 %) 161.27 keV +- 806.5 keV (5e+02 %)
layer 22: 1.5755 MeV +- 3.019 MeV (1.9e+02 %) 163.21 keV +- 908.1 keV (5.6e+02 %)
layer 23: 1.5314 MeV +- 2.482 MeV (1.6e+02 %) 161.8 keV +- 850.8 keV (5.3e+02 %)
layer 24: 1.5619 MeV +- 2.659 MeV (1.7e+02 %) 166.95 keV +- 980.3 keV (5.9e+02 %)
layer 25: 1.5477 MeV +- 2.437 MeV (1.6e+02 %) 153.78 keV +- 399.4 keV (2.6e+02 %)
layer 26: 1.5152 MeV +- 1.939 MeV (1.3e+02 %) 163.47 keV +- 764.1 keV (4.7e+02 %)
layer 27: 1.519 MeV +- 2.235 MeV (1.5e+02 %) 155.25 keV +- 648.3 keV (4.2e+02 %)
layer 28: 1.5035 MeV +- 1.883 MeV (1.3e+02 %) 153.41 keV +- 711.6 keV (4.6e+02 %)
layer 29: 1.5254 MeV +- 2.339 MeV (1.5e+02 %) 157.19 keV +- 462.5 keV (2.9e+02 %)
layer 30: 1.5403 MeV +- 2.536 MeV (1.6e+02 %) 168.58 keV +- 1.041 MeV (6.2e+02 %)
layer 31: 1.5631 MeV +- 2.603 MeV (1.7e+02 %) 157.27 keV +- 510.4 keV (3.2e+02 %)
layer 32: 1.5193 MeV +- 2.302 MeV (1.5e+02 %) 160.17 keV +- 542.9 keV (3.4e+02 %)
layer 33: 1.5525 MeV +- 2.564 MeV (1.7e+02 %) 156.91 keV +- 795.2 keV (5.1e+02 %)
layer 34: 1.5031 MeV +- 1.848 MeV (1.2e+02 %) 156.29 keV +- 562.9 keV (3.6e+02 %)
layer 35: 1.5107 MeV +- 1.911 MeV (1.3e+02 %) 150.06 keV +- 443.7 keV (3e+02 %)
layer 36: 1.5369 MeV +- 2.297 MeV (1.5e+02 %) 169.74 keV +- 1.171 MeV (6.9e+02 %)
layer 37: 1.5271 MeV +- 2.287 MeV (1.5e+02 %) 148.86 keV +- 430.3 keV (2.9e+02 %)
layer 38: 1.5112 MeV +- 2.082 MeV (1.4e+02 %) 154.88 keV +- 455.5 keV (2.9e+02 %)
layer 39: 1.5265 MeV +- 2.063 MeV (1.4e+02 %) 149.43 keV +- 473 keV (3.2e+02 %)
layer 40: 1.4947 MeV +- 1.835 MeV (1.2e+02 %) 156.1 keV +- 475.8 keV (3e+02 %)
layer 41: 1.5366 MeV +- 2.447 MeV (1.6e+02 %) 154.02 keV +- 557.8 keV (3.6e+02 %)
layer 42: 1.5292 MeV +- 2.362 MeV (1.5e+02 %) 167.42 keV +- 1.206 MeV (7.2e+02 %)
layer 43: 1.5378 MeV +- 2.365 MeV (1.5e+02 %) 157.55 keV +- 726.4 keV (4.6e+02 %)
layer 44: 1.5618 MeV +- 2.524 MeV (1.6e+02 %) 159.78 keV +- 468.4 keV (2.9e+02 %)
layer 45: 1.5186 MeV +- 1.994 MeV (1.3e+02 %) 153.95 keV +- 480.5 keV (3.1e+02 %)
layer 46: 1.5297 MeV +- 2.2 MeV (1.4e+02 %) 167.08 keV +- 1.038 MeV (6.2e+02 %)
layer 47: 1.5651 MeV +- 2.479 MeV (1.6e+02 %) 164.36 keV +- 902.2 keV (5.5e+02 %)
layer 48: 1.5647 MeV +- 2.578 MeV (1.6e+02 %) 156.71 keV +- 812.1 keV (5.2e+02 %)
layer 49: 1.5125 MeV +- 2.149 MeV (1.4e+02 %) 153.18 keV +- 471 keV (3.1e+02 %)
layer 50: 1.5248 MeV +- 2.337 MeV (1.5e+02 %) 164.4 keV +- 921 keV (5.6e+02 %)
layer 51: 1.5294 MeV +- 2.455 MeV (1.6e+02 %) 155.96 keV +- 871.4 keV (5.6e+02 %)
layer 52: 1.554 MeV +- 2.581 MeV (1.7e+02 %) 175.23 keV +- 1.179 MeV (6.7e+02 %)
layer 53: 1.5471 MeV +- 2.396 MeV (1.5e+02 %) 145.65 keV +- 390 keV (2.7e+02 %)
layer 54: 1.5309 MeV +- 2.245 MeV (1.5e+02 %) 169.77 keV +- 1.125 MeV (6.6e+02 %)
layer 55: 1.513 MeV +- 2.207 MeV (1.5e+02 %) 153.39 keV +- 515.6 keV (3.4e+02 %)
layer 56: 1.5024 MeV +- 2.061 MeV (1.4e+02 %) 151.58 keV +- 358.3 keV (2.4e+02 %)
layer 57: 1.4889 MeV +- 1.827 MeV (1.2e+02 %) 150.51 keV +- 369.4 keV (2.5e+02 %)
layer 58: 1.5307 MeV +- 2.137 MeV (1.4e+02 %) 163.01 keV +- 556.1 keV (3.4e+02 %)
layer 59: 1.5119 MeV +- 1.844 MeV (1.2e+02 %) 154.55 keV +- 527.6 keV (3.4e+02 %)
layer 60: 1.5087 MeV +- 1.995 MeV (1.3e+02 %) 148.87 keV +- 362.6 keV (2.4e+02 %)
layer 61: 1.5339 MeV +- 2.292 MeV (1.5e+02 %) 155.7 keV +- 473.2 keV (3e+02 %)
layer 62: 1.5279 MeV +- 2.163 MeV (1.4e+02 %) 157.55 keV +- 522.5 keV (3.3e+02 %)
layer 63: 1.5441 MeV +- 2.33 MeV (1.5e+02 %) 155.87 keV +- 590.7 keV (3.8e+02 %)
layer 64: 1.5068 MeV +- 2.143 MeV (1.4e+02 %) 162.66 keV +- 766.8 keV (4.7e+02 %)
layer 65: 1.5261 MeV +- 2.138 MeV (1.4e+02 %) 165.78 keV +- 802.1 keV (4.8e+02 %)
layer 66: 1.4897 MeV +- 1.91 MeV (1.3e+02 %) 149.49 keV +- 491.9 keV (3.3e+02 %)
layer 67: 1.528 MeV +- 2.169 MeV (1.4e+02 %) 156.3 keV +- 460.9 keV (2.9e+02 %)
layer 68: 1.4954 MeV +- 1.944 MeV (1.3e+02 %) 155.74 keV +- 629.6 keV (4e+02 %)
layer 69: 1.5124 MeV +- 2.08 MeV (1.4e+02 %) 150.82 keV +- 537.6 keV (3.6e+02 %)
layer 70: 1.5192 MeV +- 2.235 MeV (1.5e+02 %) 155.17 keV +- 665.7 keV (4.3e+02 %)
layer 71: 1.5377 MeV +- 2.093 MeV (1.4e+02 %) 159.17 keV +- 828.7 keV (5.2e+02 %)
layer 72: 1.5137 MeV +- 2.072 MeV (1.4e+02 %) 154.74 keV +- 836.8 keV (5.4e+02 %)
layer 73: 1.5149 MeV +- 2.189 MeV (1.4e+02 %) 164.22 keV +- 890.1 keV (5.4e+02 %)
layer 74: 1.5431 MeV +- 2.198 MeV (1.4e+02 %) 169.28 keV +- 814.2 keV (4.8e+02 %)
layer 75: 1.5174 MeV +- 2.251 MeV (1.5e+02 %) 157.68 keV +- 525.8 keV (3.3e+02 %)
layer 76: 1.5371 MeV +- 2.381 MeV (1.5e+02 %) 161.66 keV +- 864.3 keV (5.3e+02 %)
layer 77: 1.5103 MeV +- 2.205 MeV (1.5e+02 %) 164.53 keV +- 912.2 keV (5.5e+02 %)
layer 78: 1.5301 MeV +- 2.307 MeV (1.5e+02 %) 154.44 keV +- 724.5 keV (4.7e+02 %)
layer 79: 1.5195 MeV +- 2.238 MeV (1.5e+02 %) 160.57 keV +- 708.9 keV (4.4e+02 %)
layer 80: 1.5318 MeV +- 2.363 MeV (1.5e+02 %) 156.93 keV +- 745.5 keV (4.8e+02 %)
layer 81: 1.5612 MeV +- 2.626 MeV (1.7e+02 %) 153.42 keV +- 504.2 keV (3.3e+02 %)
layer 82: 1.5079 MeV +- 1.888 MeV (1.3e+02 %) 166.81 keV +- 858.7 keV (5.1e+02 %)
layer 83: 1.5132 MeV +- 2.142 MeV (1.4e+02 %) 158.66 keV +- 883.3 keV (5.6e+02 %)
layer 84: 1.5269 MeV +- 2.358 MeV (1.5e+02 %) 162.22 keV +- 931.2 keV (5.7e+02 %)
layer 85: 1.5175 MeV +- 2.344 MeV (1.5e+02 %) 170.48 keV +- 1.022 MeV (6e+02 %)
layer 86: 1.5219 MeV +- 2.059 MeV (1.4e+02 %) 148.79 keV +- 248.4 keV (1.7e+02 %)
layer 87: 1.4942 MeV +- 1.902 MeV (1.3e+02 %) 154.76 keV +- 549.8 keV (3.6e+02 %)
layer 88: 1.5121 MeV +- 2.088 MeV (1.4e+02 %) 169.53 keV +- 979 keV (5.8e+02 %)
layer 89: 1.4943 MeV +- 1.835 MeV (1.2e+02 %) 147.05 keV +- 334.5 keV (2.3e+02 %)
layer 90: 1.5042 MeV +- 2.051 MeV (1.4e+02 %) 160.77 keV +- 689.5 keV (4.3e+02 %)
total calor : 149.93 MeV +- 22.15 MeV ( 15 %) 14.238 MeV +- 6.682 MeV ( 47 %)
total calor : 149.81 MeV +- 21.99 MeV ( 15 %) 14.359 MeV +- 7.173 MeV ( 50 %)
------------------------------------------------------------
Leakage : 850.07 MeV +- 22.15 MeV
Eleak/Ebeam = 85 % ( forward = 85 % backward = 0 % lateral =0.00563 %)
Leakage : 850.19 MeV +- 21.99 MeV
Eleak/Ebeam = 85 % ( forward = 85 % backward =0.00609 % lateral = 0 %)
------- MixMaxRng engine status -------
Current state vector is:
mixmax state, file version 1.0
N=17 V[N]={913785480964397581, 758708089138958951, 512837396174773248, 364019762387443911, 227981048687142520, 1793243795905947603, 1330771379932463971, 1882448914219819135, 2233873876355778306, 788041446220860046, 1952579403311736228, 1743856099635947558, 1985919791136845935, 193054626673977153, 1796668647638512857, 2246921724815697498, 55631510838562738} counter= 13sumtot= 27755911115619680
N=17 V[N]={1822786039505024351, 451739014868820147, 1164805617051389993, 1988509177009954377, 1061872345902142530, 450944991230973789, 1368184653629848322, 803803675477224967, 1765281351029302180, 1941711124970290233, 1346266529720313019, 11507093520180130, 538993874075141425, 896937691016120703, 1951454627675545704, 2023874181048844542, 562197892581109933} counter= 9sumtot= 1704125806602674737
---------------------------------------
G4 kernel has come to Quit state.
UserDetectorConstruction deleted.
examples/advanced/brachytherapy/brachytherapy.out
+13 -11
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -46,7 +46,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -387,7 +389,7 @@ ePairProd: for e- XStype:1 SubType=4
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -426,7 +428,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -459,7 +461,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -546,7 +548,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -579,7 +581,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -612,7 +614,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -645,7 +647,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -678,7 +680,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -711,7 +713,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -744,7 +746,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
======================================================================
examples/advanced/composite_calorimeter/composite_calorimeter.out
+29 -20
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -78,6 +78,7 @@ HcalTB96 is registered to the default region.
* Magnetic Field is off *
* *
***************************
G4ChordFinder: stepperDriverId: 2
*******************************************************
* *
* Constructing a CCaloSD with name HadronCalorimeter
@@ -216,7 +217,7 @@ eBrem: for e- XStype:4 SubType=3
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -248,7 +249,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -280,7 +281,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -293,7 +294,6 @@ ionIoni: for GenericIon XStype:3 SubType=2
dE/dx and range tables from 100 eV to 100 TeV in 84 bins
Lambda tables from threshold to 100 TeV, 7 bins/decade, spline: 1
StepFunction=(0.2, 0.1 mm), integ: 3, fluct: 1, linLossLim= 0.02
Stopping Power data for 17 ion/material pairs
===== EM models for the G4Region DefaultRegionForTheWorld ======
BraggIon : Emin= 0 eV Emax= 2 MeV
BetheBloch : Emin= 2 MeV Emax= 100 TeV
@@ -339,7 +339,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -371,7 +371,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -403,7 +403,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -435,7 +435,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -467,7 +467,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -499,7 +499,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -531,7 +531,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -917,12 +917,21 @@ CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
================================================================
### G4LevelReader: broken transition 0 from level 24 to 24 for isotope Z= 89 A= 219 - use ground level
=======================================================================
====== Pre-compound/De-excitation Physics Parameters ========
====== Geant4 Native Pre-compound Model Parameters ========
=======================================================================
Type of pre-compound inverse x-section 3
Pre-compound model active 1
Pre-compound excitation low energy 100 keV
Pre-compound excitation high energy 30 MeV
Angular generator for pre-compound model 1
Use NeverGoBack option for pre-compound model 0
Use SoftCutOff option for pre-compound model 0
Use CEM transitions for pre-compound model 1
Use GNASH transitions for pre-compound model 0
Use HETC submodel for pre-compound model 0
=======================================================================
====== Nuclear De-excitation Module Parameters ========
=======================================================================
Type of de-excitation inverse x-section 3
Type of de-excitation factory Evaporation+GEM
Number of de-excitation channels 68
@@ -1084,7 +1093,7 @@ G4GeometryManager::ReportVoxelStats -- Voxel Statistics
Run terminated.
Run Summary
Number of events processed : 20
User=15.470000s Real=15.602755s Sys=0.010000s
User=13.680000s Real=13.774063s Sys=0.000000s
### Run 0 end.
... write file : ccal.root - done
... close file : ccal.root - done
@@ -1102,12 +1111,12 @@ G4SDManager deleted.
EventManager deleted.
Units table cleared.
TransportationManager deleted.
Total navigation history collections cleaned: 51
Total navigation history collections cleaned: 47
G4RNGHelper object is deleted.
================== Deleting memory pools ===================
Pool ID '20G4NavigationLevelRep', size : 0.0731 MB
Pool ID '20G4NavigationLevelRep', size : 0.0692 MB
Pool ID '24G4ReferenceCountedHandleIvE', size : 0.000961 MB
Pool ID '17G4DynamicParticle', size : 0.0298 MB
Pool ID '17G4DynamicParticle', size : 0.0423 MB
Pool ID '16G4SmartVoxelNode', size : 0.00769 MB
Pool ID '17G4SmartVoxelProxy', size : 0.00385 MB
Pool ID '7G4Event', size : 0.000961 MB
@@ -1115,13 +1124,13 @@ Pool ID '15G4PrimaryVertex', size : 0.000961 MB
Pool ID '17G4PrimaryParticle', size : 0.000961 MB
Pool ID '15G4HCofThisEvent', size : 0.000961 MB
Pool ID '16G4HitsCollection', size : 0.000961 MB
Pool ID '7G4Track', size : 0.0586 MB
Pool ID '7G4Track', size : 0.0836 MB
Pool ID '18G4TouchableHistory', size : 0.00577 MB
Pool ID '15G4CountedObjectIvE', size : 0.000961 MB
Pool ID '17G4ReactionProduct', size : 0.0163 MB
Pool ID '17G4ReactionProduct', size : 0.0135 MB
Pool ID '10G4Fragment', size : 0.00577 MB
Number of memory pools allocated: 15 of which, static: 0
Dynamic pools deleted: 15 / Total memory freed: 0.21 MB
Dynamic pools deleted: 15 / Total memory freed: 0.24 MB
============================================================
G4Allocator objects are deleted.
UImanager deleted.
examples/advanced/doiPET/doiPET.out
+10 -10
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -817,14 +817,14 @@ G4GeometryManager::ReportVoxelStats -- Voxel Statistics
Voxelisation: top CPU users:
Percent Total CPU System CPU Memory Volume
------- ---------- ---------- -------- ----------
100.00 0.01 0.00 69k world_logicalV
0.00 0.00 0.00 406k airBox_logicalV
100.00 0.01 0.00 406k airBox_logicalV
0.00 0.00 0.00 69k world_logicalV
Voxelisation: top memory users:
Percent Memory Heads Nodes Pointers Total CPU Volume
------- -------- ------ ------ -------- ---------- ----------
85.51 406k 931 5788 8898 0.00 airBox_logicalV
14.49 68k 182 683 3080 0.01 world_logicalV
85.51 406k 931 5788 8898 0.01 airBox_logicalV
14.49 68k 182 683 3080 0.00 world_logicalV
### Run 0 starts.
### Begin of Run 0 start.
@@ -866,7 +866,7 @@ N=17 V[N]={87900885656017340, 2136126672992718976, 110623987125446578, 176001763
Run terminated.
Run Summary
Number of events processed : 1000000
User=123.620000s Real=126.554271s Sys=1.860000s
User=106.510000s Real=109.183284s Sys=1.390000s
### End of Run (1000000 events)
G4 kernel has come to Quit state.
@@ -882,19 +882,19 @@ G4SDManager deleted.
EventManager deleted.
Units table cleared.
TransportationManager deleted.
Total navigation history collections cleaned: 14
Total navigation history collections cleaned: 13
G4RNGHelper object is deleted.
================== Deleting memory pools ===================
Pool ID '20G4NavigationLevelRep', size : 0.0202 MB
Pool ID '20G4NavigationLevelRep', size : 0.0183 MB
Pool ID '24G4ReferenceCountedHandleIvE', size : 0.000961 MB
Pool ID '17G4DynamicParticle', size : 0.0125 MB
Pool ID '17G4DynamicParticle', size : 0.0115 MB
Pool ID '16G4SmartVoxelNode', size : 0.201 MB
Pool ID '17G4SmartVoxelProxy', size : 0.116 MB
Pool ID '7G4Event', size : 0.000961 MB
Pool ID '15G4PrimaryVertex', size : 0.000961 MB
Pool ID '17G4PrimaryParticle', size : 0.000961 MB
Pool ID '19G4ElectronOccupancy', size : 0.000961 MB
Pool ID '7G4Track', size : 0.024 MB
Pool ID '7G4Track', size : 0.0221 MB
Pool ID '18G4TouchableHistory', size : 0.00192 MB
Pool ID '15G4CountedObjectIvE', size : 0.000961 MB
Number of memory pools allocated: 12 of which, static: 0
examples/advanced/eFLASH_radiotherapy/History
+3
View File
@@ -4,6 +4,9 @@ See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
which **must** added in reverse chronological order (newest at the top). It must **not**
be used as a substitute for writing good git commit messages!
## 2023-06-19 G. Milluzzo (eFLASH_radiotherapy-V11-01-00)
- Removed visualization in batch mode
## 2022-11-18 F. Romano (eFLASH_radiotherapy-V11-00-00)
- Added the new advanced example eFLASH_radiotherapy
examples/advanced/eFLASH_radiotherapy/eFLASH_radiotherapy.out
+14 -12
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -43,7 +43,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -349,7 +351,7 @@ ePairProd: for e- XStype:1 SubType=4
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -389,7 +391,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -421,7 +423,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -507,7 +509,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -539,7 +541,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -571,7 +573,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -603,7 +605,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -635,7 +637,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -667,7 +669,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -699,7 +701,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
======================================================================
@@ -816,7 +818,7 @@ See commands in /vis/modeling/trajectories/ for other options.
Run terminated.
Run Summary
Number of events processed : 500000
User=1184.030000s Real=1200.808567s Sys=6.140000s
User=939.860000s Real=952.397755s Sys=5.140000s
--------------------End of Global Run-----------------------
The run was 500000 events /score/dumpQuantityToFile boxMesh_1 dose dose.out
examples/advanced/eFLASH_radiotherapy/flash.cc
+11 -12
View File
@@ -46,10 +46,7 @@
int main(int argc, char **argv) {
G4UIExecutive *ui = 0;
if (argc == 1) {
ui = new G4UIExecutive(argc, argv);
}
// G4Random::setTheEngine(new CLHEP::MTwistEngine);
@@ -72,18 +69,20 @@ int main(int argc, char **argv) {
G4UImanager *UImanager = G4UImanager::GetUIpointer();
G4ScoringManager::GetScoringManager();
if (!ui) {
G4String command = "/control/execute ";
G4String fileName = argv[1];
UImanager->ApplyCommand(command + fileName);
} else {
G4UIExecutive *ui = 0;
if (argc == 1) {
ui = new G4UIExecutive(argc, argv);
UImanager->ApplyCommand("/control/execute init_vis.mac");
ui->SessionStart();
delete ui;
}
else
{
G4String command = "/control/execute ";
G4String fileName = argv[1];
UImanager->ApplyCommand(command + fileName);
}
delete visManager;
delete runManager;
examples/advanced/eRosita/eRosita.out
+6 -6
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -78,7 +78,7 @@ New sensitive detector <TrackerChamberSD> is registered at /eRosita/
=======================================================================
====== Electromagnetic Physics Parameters ========
=======================================================================
LPM effect enabled 1
LPM effect enabled 0
Enable creation and use of sampling tables 0
Apply cuts on all EM processes 0
Use combined TransportationWithMsc Disabled
@@ -183,7 +183,7 @@ eIoni: for e- XStype:3 SubType=2
eBrem: for e- XStype:4 SubType=3
dE/dx and range tables from 100 eV to 100 TeV in 84 bins
Lambda tables from threshold to 100 TeV, 7 bins/decade, spline: 1
LPM flag: 1 for E > 1 GeV, VertexHighEnergyTh(GeV)= 100000
LPM flag: 0 for E > 1 GeV, VertexHighEnergyTh(GeV)= 100000
===== EM models for the G4Region DefaultRegionForTheWorld ======
LowEnBrem : Emin= 0 eV Emax= 1 GeV AngularGen2BS
eBremLPM : Emin= 1 GeV Emax= 100 TeV ModifiedTsai
@@ -203,7 +203,7 @@ eIoni: for e+ XStype:3 SubType=2
eBrem: for e+ XStype:4 SubType=3
dE/dx and range tables from 100 eV to 100 TeV in 84 bins
Lambda tables from threshold to 100 TeV, 7 bins/decade, spline: 1
LPM flag: 1 for E > 1 GeV, VertexHighEnergyTh(GeV)= 100000
LPM flag: 0 for E > 1 GeV, VertexHighEnergyTh(GeV)= 100000
===== EM models for the G4Region DefaultRegionForTheWorld ======
LowEnBrem : Emin= 0 eV Emax= 1 GeV AngularGen2BS
eBremLPM : Emin= 1 GeV Emax= 100 TeV ModifiedTsai
@@ -524,9 +524,9 @@ G4GeometryManager::ReportVoxelStats -- Voxel Statistics
Run terminated.
Run Summary
Number of events processed : 1000
User=3.830000s Real=3.855846s Sys=0.000000s
User=3.710000s Real=3.725513s Sys=0.010000s
--- Run 0 (master) end. Total number of events: 1000.
User=3.840000s Real=3.856168s Sys=0.000000s
User=3.710000s Real=3.725783s Sys=0.010000s
G4 kernel has come to Quit state.
UserDetectorConstruction deleted.
UserPhysicsList deleted.
examples/advanced/fastAerosol/History
+3
View File
@@ -4,6 +4,9 @@ See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
which **must** added in reverse chronological order (newest at the top). It must **not**
be used as a substitute for writing good git commit messages!
## 2023-04-24 Susanna Guatelli (fastAerosol-V11-01-00)
- General cleaning of the code, including run-clang-tidy
## 2022-09-09 Susanna Guatelli (fastAerosol-V11-00-01)
- Ranecu engine removed, default engine used now
examples/advanced/fastAerosol/fastAerosol.cc
+50 -53
View File
@@ -51,68 +51,65 @@ int main(int argc,char** argv)
G4int nThreads = 4;
runManager->SetNumberOfThreads(nThreads);
// Detect interactive mode (if no arguments) and define UI session
//
G4UIExecutive* ui = 0;
if ( argc == 1 ) {
ui = new G4UIExecutive(argc, argv);
}
// Set mandatory initialization classes
//
//G4ScoringManager* scoringManager =
G4ScoringManager::GetScoringManager();
// Set mandatory initialization classes
//
//G4ScoringManager* scoringManager =
G4ScoringManager::GetScoringManager();
// Detector construction initialization
runManager->SetUserInitialization(new DetectorConstruction());
// Detector construction initialization
runManager->SetUserInitialization(new DetectorConstruction());
// Physics list
G4VModularPhysicsList* physicsList = new QGSP_BIC;
physicsList->SetVerboseLevel(1);
// Physics list
G4VModularPhysicsList* physicsList = new QGSP_BIC;
physicsList->SetVerboseLevel(1);
// Physics list - step limiter
auto* stepLimiter = new G4StepLimiterPhysics;
stepLimiter->SetApplyToAll(true); // apply step limit to all particles. Default we set limit to DBL_MAX
// Physics list - step limiter
G4StepLimiterPhysics* stepLimiter = new G4StepLimiterPhysics;
stepLimiter->SetApplyToAll(true); // apply step limit to all particles. Default we set limit to DBL_MAX
physicsList->RegisterPhysics(stepLimiter);
physicsList->RegisterPhysics(stepLimiter);
// Physics list initialization
runManager->SetUserInitialization(physicsList);
// Physics list initialization
runManager->SetUserInitialization(physicsList);
// User action initialization
runManager->SetUserInitialization(new ActionInitialization());
// User action initialization
runManager->SetUserInitialization(new ActionInitialization());
// Initialize visualization
//
G4VisManager* visManager = new G4VisExecutive;
// G4VisExecutive can take a verbosity argument - see /vis/verbose guidance.
// G4VisManager* visManager = new G4VisExecutive("Quiet");
visManager->Initialize();
// Initialize visualization
//
auto* visManager = new G4VisExecutive;
visManager->Initialize();
// Get the pointer to the User Interface manager
G4UImanager* UImanager = G4UImanager::GetUIpointer();
// Get the pointer to the User Interface manager
auto* UImanager = G4UImanager::GetUIpointer();
// Detect interactive mode (if no arguments) and define UI session
//
G4UIExecutive* ui = nullptr;
if ( argc == 1 ) ui = new G4UIExecutive(argc, argv);
// Process macro or start UI session
//
if ( ! ui )
{
// batch mode
G4String command = "/control/execute ";
G4String fileName = argv[1];
UImanager->ApplyCommand(command+fileName);
}
else
{
// interactive mode
UImanager->ApplyCommand("/control/execute init_vis.mac");
ui->SessionStart();
delete ui;
}
// Process macro or start UI session
//
if ( ! ui ) {
// batch mode
G4String command = "/control/execute ";
G4String fileName = argv[1];
UImanager->ApplyCommand(command+fileName);
}
else {
// interactive mode
UImanager->ApplyCommand("/control/execute init_vis.mac");
ui->SessionStart();
delete ui;
}
// Job termination
// Free the store: user actions, physics_list and detector_description are
// owned and deleted by the run manager, so they should not be deleted
// in the main() program !
// Job termination
// Free the store: user actions, physics_list and detector_description are
// owned and deleted by the run manager, so they should not be deleted
// in the main() program !
delete visManager;
delete runManager;
//delete scoringManager;
delete visManager;
delete runManager;
return 0;
}
examples/advanced/fastAerosol/fastAerosol.out
+24 -14
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -45,7 +45,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -222,7 +224,7 @@ eBrem: for e- XStype:4 SubType=3
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -254,7 +256,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -286,7 +288,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -299,7 +301,6 @@ ionIoni: for GenericIon XStype:3 SubType=2
dE/dx and range tables from 100 eV to 100 TeV in 84 bins
Lambda tables from threshold to 100 TeV, 7 bins/decade, spline: 1
StepFunction=(0.2, 0.1 mm), integ: 3, fluct: 1, linLossLim= 0.02
Stopping Power data for 17 ion/material pairs
===== EM models for the G4Region DefaultRegionForTheWorld ======
BraggIon : Emin= 0 eV Emax= 2 MeV
BetheBloch : Emin= 2 MeV Emax= 100 TeV
@@ -345,7 +346,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -377,7 +378,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -409,7 +410,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -441,7 +442,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -473,7 +474,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -505,7 +506,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -537,7 +538,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -910,12 +911,21 @@ CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
================================================================
=======================================================================
====== Pre-compound/De-excitation Physics Parameters ========
====== Geant4 Native Pre-compound Model Parameters ========
=======================================================================
Type of pre-compound inverse x-section 3
Pre-compound model active 1
Pre-compound excitation low energy 100 keV
Pre-compound excitation high energy 30 MeV
Angular generator for pre-compound model 1
Use NeverGoBack option for pre-compound model 0
Use SoftCutOff option for pre-compound model 0
Use CEM transitions for pre-compound model 1
Use GNASH transitions for pre-compound model 0
Use HETC submodel for pre-compound model 0
=======================================================================
====== Nuclear De-excitation Module Parameters ========
=======================================================================
Type of de-excitation inverse x-section 3
Type of de-excitation factory Evaporation+GEM
Number of de-excitation channels 68
@@ -13863,7 +13873,7 @@ Step# X(mm) Y(mm) Z(mm) KinE(MeV) dE(MeV) StepLeng TrackLeng NextVolu
Run terminated.
Run Summary
Number of events processed : 10
User=1.280000s Real=1.323262s Sys=0.030000s
User=1.180000s Real=1.271009s Sys=0.020000s
--------------------End of Global Run-----------------------
The run consists of 10 proton of 50 MeV
examples/advanced/fastAerosol/include/FAActionInitialization.hh
+4 -6
View File
@@ -23,7 +23,6 @@
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
// (copied from B1ActionInitialization)
#ifndef ActionInitialization_h
@@ -36,13 +35,12 @@
class ActionInitialization : public G4VUserActionInitialization
{
public:
ActionInitialization();
virtual ~ActionInitialization();
explicit ActionInitialization();
virtual ~ActionInitialization()=default;
virtual void BuildForMaster() const;
virtual void Build() const;
virtual void BuildForMaster() const override;
virtual void Build() const override;
};
#endif
examples/advanced/fastAerosol/include/FACloudParameterisation.hh
+2 -5
View File
@@ -23,7 +23,6 @@
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
// (adapted from B2bChamberParameterisation)
// Author: A.Knaian (ara@nklabs.com), N.MacFadden (natemacfadden@gmail.com)
@@ -56,9 +55,9 @@ class CloudParameterisation : public G4VPVParameterisation
{
public:
CloudParameterisation(const std::vector<G4ThreeVector>& positions);
explicit CloudParameterisation(const std::vector<G4ThreeVector>& positions);
virtual ~CloudParameterisation();
virtual ~CloudParameterisation()=default;
void ComputeTransformation (const G4int copyNo,
G4VPhysicalVolume* physVol) const;
@@ -90,8 +89,6 @@ class CloudParameterisation : public G4VPVParameterisation
void ComputeDimensions (G4Sphere&,const G4int,
const G4VPhysicalVolume*) const {}
private:
std::vector<G4ThreeVector> fPositions;
};
#endif
examples/advanced/fastAerosol/include/FADetectorConstruction.hh
+33 -31
View File
@@ -45,47 +45,49 @@ class DetectorConstructionMessenger;
class DetectorConstruction : public G4VUserDetectorConstruction
{
public:
DetectorConstruction();
virtual ~DetectorConstruction();
virtual G4VPhysicalVolume* Construct();
public:
explicit DetectorConstruction();
virtual ~DetectorConstruction();
virtual G4VPhysicalVolume* Construct() override;
G4LogicalVolume* GetScoringVolume() const { return fScoringVolume; }
G4LogicalVolume* GetScoringVolume() const { return fScoringVolume; }
// Physics
G4double fStepLim = DBL_MAX; // global step limit
G4UserLimits* fStepLimits; // physics implementation of limit
// Physics
G4double fStepLim = DBL_MAX;// global step limit
G4UserLimits* fStepLimits;// physics implementation of limit
// Cloud build choice
G4bool fFastAerosolCloud = false;
G4bool fParameterisedCloud = false;
G4bool fSmoothCloud = false;
// Cloud build choice
G4bool fFastAerosolCloud = false;
G4bool fParameterisedCloud = false;
G4bool fSmoothCloud = false;
// Cloud droplet details
G4double fDropletR = 1;
// Cloud droplet details
G4double fDropletR = 1;
// FastAerosol cloud details
FastAerosol* fCloud = NULL; // the cloud bulk and droplet positions
G4bool fPrePopulate = false; // whether to pre-load droplet positions (true) or not (false)
G4double fDropletNumDens = 0; // number density of droplets
G4double fMinSpacing = 0.0; // minimum spacing between droplets
int fCloudSeed = 0; // random seed dictating droplet distribution
// FastAerosol cloud details
FastAerosol* fCloud = NULL; // the cloud bulk and droplet positions
G4bool fPrePopulate = false;
// whether to pre-load droplet positions (true) or not (false)
G4double fDropletNumDens = 0; //number density of droplets
G4double fMinSpacing = 0.0;// minimum spacing between droplets
G4int fCloudSeed = 0; // random seed dictating droplet distribution
// parameterised cloud details
G4double fSmartless = 2.0; // control the 'fSmartless' property of parameterised solid. Roughly how many voxels the volume is split into for geometry optimization
// parameterised cloud details
G4double fSmartless = 2.0;
// control the 'fSmartless' property of parameterised solid. Roughly how many voxels the volume is split into for geometry optimization
G4String fCloudShapeStr = "box"; // cloud bulk shape
G4String fDropletShapeStr = "sphere"; // droplet shape
G4String fCloudShapeStr = "box"; // cloud bulk shape
G4String fDropletShapeStr = "sphere"; // droplet shape
G4VSolid* fCloudShape; // actual cloud bulk shape
G4VSolid* fDropletShape; // actual droplet solid
G4VSolid* fCloudShape; // actual cloud bulk shape
G4VSolid* fDropletShape;// actual droplet solid
protected:
G4LogicalVolume* fScoringVolume;
protected:
G4LogicalVolume* fScoringVolume;
private:
DetectorConstructionMessenger* fMessenger;
private:
DetectorConstructionMessenger* fMessenger;
};
#endif
examples/advanced/fastAerosol/include/FAEventAction.hh
+9 -11
View File
@@ -23,7 +23,6 @@
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
// (copied from B1EventAction)
#ifndef EventAction_h
@@ -39,20 +38,19 @@ class RunAction;
class EventAction : public G4UserEventAction
{
public:
EventAction(RunAction* runAction);
virtual ~EventAction();
public:
explicit EventAction(RunAction* runAction);
virtual ~EventAction()=default;
virtual void BeginOfEventAction(const G4Event* event);
virtual void EndOfEventAction(const G4Event* event);
virtual void BeginOfEventAction(const G4Event* event) override;
virtual void EndOfEventAction(const G4Event* event) override;
void AddEdep(G4double edep) { fEdep += edep; }
void AddEdep(G4double edep) { fEdep += edep; }
private:
RunAction* fRunAction;
G4double fEdep;
private:
RunAction* fRunAction;
G4double fEdep;
};
#endif
examples/advanced/fastAerosol/include/FAPrimaryGeneratorAction.hh
+10 -12
View File
@@ -23,7 +23,6 @@
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
// (adapted from B1PrimaryGeneratorAction)
// Author: A.Knaian (ara@nklabs.com), N.MacFadden (natemacfadden@gmail.com)
@@ -40,19 +39,18 @@ class G4Box;
class PrimaryGeneratorAction : public G4VUserPrimaryGeneratorAction
{
public:
PrimaryGeneratorAction();
virtual ~PrimaryGeneratorAction();
public:
explicit PrimaryGeneratorAction();
virtual ~PrimaryGeneratorAction();
// method from the base class
virtual void GeneratePrimaries(G4Event*);
// method from the base class
virtual void GeneratePrimaries(G4Event*) override;
// method to access particle gun
const G4ParticleGun* GetParticleGun() const { return fParticleGun; }
// method to access particle gun
const G4ParticleGun* GetParticleGun() const { return fParticleGun; }
private:
G4ParticleGun* fParticleGun;
G4Box* fWorldBox;
private:
G4ParticleGun* fParticleGun;
G4Box* fWorldBox;
};
#endif
examples/advanced/fastAerosol/include/FARunAction.hh
+10 -12
View File
@@ -23,7 +23,6 @@
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
// (copied from B1RunAction)
#ifndef RunAction_h
@@ -43,20 +42,19 @@ class G4Run;
class RunAction : public G4UserRunAction
{
public:
RunAction();
virtual ~RunAction();
public:
explicit RunAction();
virtual ~RunAction()=default;
// virtual G4Run* GenerateRun();
virtual void BeginOfRunAction(const G4Run*);
virtual void EndOfRunAction(const G4Run*);
// virtual G4Run* GenerateRun();
virtual void BeginOfRunAction(const G4Run*) override;
virtual void EndOfRunAction(const G4Run*) override;
void AddEdep (G4double edep);
void AddEdep (G4double edep);
private:
G4Accumulable<G4double> fEdep;
G4Accumulable<G4double> fEdep2;
private:
G4Accumulable<G4double> fEdep;
G4Accumulable<G4double> fEdep2;
};
#endif
examples/advanced/fastAerosol/include/FASteppingAction.hh
+8 -9
View File
@@ -23,7 +23,6 @@
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
// (copied from B1SteppingAction)
#ifndef SteppingAction_h
@@ -41,16 +40,16 @@ class G4LogicalVolume;
class SteppingAction : public G4UserSteppingAction
{
public:
SteppingAction(EventAction* eventAction);
virtual ~SteppingAction();
public:
explicit SteppingAction(EventAction* eventAction);
virtual ~SteppingAction()=default;
// method from the base class
virtual void UserSteppingAction(const G4Step*);
// method from the base class
virtual void UserSteppingAction(const G4Step*) override;
private:
EventAction* fEventAction;
G4LogicalVolume* fScoringVolume;
private:
EventAction* fEventAction;
G4LogicalVolume* fScoringVolume;
};
#endif
examples/advanced/fastAerosol/include/FastAerosol.hh
+166 -140
View File
@@ -54,183 +54,209 @@
//using namespace std;
class FastAerosol {
public:
// Constructor; creates a random cloud of droplets
FastAerosol(const G4String& pName, G4VSolid* pCloud,
G4double pR, G4double pMinD, G4double pAvgNumDens, G4double pdR,
std::function<G4double (G4ThreeVector)> pNumDensDistribution);
class FastAerosol
{
public:
// Constructor; creates a random cloud of droplets
FastAerosol(const G4String& pName, G4VSolid* pCloud,
G4double pR, G4double pMinD,
G4double pAvgNumDens, G4double pdR,
std::function<G4double (G4ThreeVector)> pNumDensDistribution);
FastAerosol(const G4String& pName, G4VSolid* pCloud,
G4double pR, G4double pMinD, G4double pNumDens, G4double pdR);
FastAerosol(const G4String& pName, G4VSolid* pCloud,
G4double pR, G4double pMinD,
G4double pNumDens, G4double pdR);
FastAerosol(const G4String& pName, G4VSolid* pCloud,
G4double pR, G4double pMinD, G4double pNumDens);
FastAerosol(const G4String& pName, G4VSolid* pCloud,
G4double pR, G4double pMinD, G4double pNumDens);
// Destructor; frees memory
~FastAerosol();
~FastAerosol()=default;
// Populate all grids. Otherwise, they are populated on-the-fly
void PopulateAllGrids();
// Populate all grids. Otherwise, they are populated on-the-fly
void PopulateAllGrids();
// Save locations of droplets to a file for visualization/analysis purposes
void SaveToFile(const char *filename);
// Save locations of droplets to a file for visualization/analysis purposes
void SaveToFile(const char *filename);
// Get absolutely nearest droplet - must be public as FastAerosolSolid uses it
bool GetNearestDroplet(const G4ThreeVector &p, G4ThreeVector &center, G4double &closestDistance, G4double stepLim, G4VSolid* droplet, std::function<G4RotationMatrix (G4ThreeVector)> rotation);
// Get absolutely nearest droplet - must be public as FastAerosolSolid uses it
bool GetNearestDroplet(const G4ThreeVector &p, G4ThreeVector &center, G4double &closestDistance, G4double stepLim, G4VSolid* droplet, std::function<G4RotationMatrix (G4ThreeVector)> rotation);
// Get nearest droplet along a vector - must be public as FastAerosolSolid uses it
bool GetNearestDroplet(const G4ThreeVector &p, const G4ThreeVector &v, G4ThreeVector &center, G4double &closestDistance, G4double stepLim, G4VSolid* droplet, std::function<G4RotationMatrix (G4ThreeVector)> rotation);
// Get nearest droplet along a vector - must be public as FastAerosolSolid uses it
bool GetNearestDroplet(const G4ThreeVector &p, const G4ThreeVector &v, G4ThreeVector &center, G4double &closestDistance, G4double stepLim, G4VSolid* droplet, std::function<G4RotationMatrix (G4ThreeVector)> rotation);
// ======
// Inline
// ======
// Input quantities
inline G4String GetName() const; // aerosol name
inline G4VSolid* GetBulk() const; // bulk shape
inline G4double GetRadius() const; // droplet radius
inline G4double GetAvgNumDens() const; // droplet number density
//inline G4double GetPitch() const; // grid pitch
// ======
// Inline
// ======
// Input quantities
inline G4String GetName() const; //fasterosol name
inline G4VSolid* GetBulk() const; // bulk shape
inline G4double GetRadius() const; // droplet radius
inline G4double GetAvgNumDens() const; // droplet number density
//inline G4double GetPitch() const; // grid pitch
inline G4int GetNumDroplets() const; // in case the absolute number is more relevant than density
inline G4int GetNumDroplets() const;
// in case the absolute number is more relevant than density
// Bulk quantities
inline G4double GetXHalfLength() const;
inline G4double GetYHalfLength() const;
inline G4double GetZHalfLength() const;
inline void GetBoundingLimits(G4ThreeVector &pMin, G4ThreeVector &pMax) const;
inline G4double GetCubicVolume() const;
// Bulk quantities
inline G4double GetXHalfLength() const;
inline G4double GetYHalfLength() const;
inline G4double GetZHalfLength() const;
inline void GetBoundingLimits(G4ThreeVector &pMin, G4ThreeVector &pMax) const;
inline G4double GetCubicVolume() const;
inline G4double DistanceToCloud(const G4ThreeVector &p);
inline G4double DistanceToCloud(const G4ThreeVector &p, const G4ThreeVector &v);
inline G4double DistanceToCloud(const G4ThreeVector &p);
inline G4double DistanceToCloud(const G4ThreeVector &p, const G4ThreeVector &v);
// Misc getters and setters
inline long GetSeed();
inline void SetSeed(long seed);
// Misc getters and setters
inline long GetSeed();
inline void SetSeed(long seed);
inline G4int GetNumPlacementTries();
inline void SetNumPlacementTries(G4int numTries);
inline G4int GetNumPlacementTries();
inline void SetNumPlacementTries(G4int numTries);
inline G4int GetPreSphereR();
inline void SetPreSphereR(G4int fPreSphereRIn);
inline G4int GetPreSphereR();
inline void SetPreSphereR(G4int fPreSphereRIn);
inline std::function<G4double (G4ThreeVector)> GetDistribution(); // the droplet number density distribution
inline std::function<G4double (G4ThreeVector)> GetDistribution(); // the droplet number density distribution
inline G4double GetDropletsPerVoxel();
inline void SetDropletsPerVoxel(G4double newDropletsPerVoxel);
inline G4double GetDropletsPerVoxel();
inline void SetDropletsPerVoxel(G4double newDropletsPerVoxel);
// Printing diagnostic tool
inline void PrintPopulationReport();
// Printing diagnostic tool
inline void PrintPopulationReport();
private:
G4double kCarTolerance;
private:
G4double kCarTolerance;
// Parameters, set in constructor
G4String fName;
// Parameters, set in constructor
G4String fName;
G4VSolid* fCloud; // Solid volume of the cloud
G4double fDx, fDy, fDz; // Half widths
G4double fR; // Bounding radius of each droplet
G4double fR2; // Bounding radius squared of each droplet
G4double fdR; // Uncertainty in DistanceToIn droplet when just using knowledge of droplet center
G4VSolid* fCloud; // Solid volume of the cloud
G4double fDx, fDy, fDz; // Half widths
G4double fMinD; // Minimum distance allowed between faces of droplets when constructing random array of droplets
G4double fR; // Bounding radius of each droplet
G4double fR2; // Bounding radius squared of each droplet
std::function<G4double (G4ThreeVector)> fDistribution;
G4double fAvgNumDens; // Average droplet number density
G4double fdR; // Uncertainty in DistanceToIn droplet when just using knowledge of droplet center
long int fNumDroplets = 0;
// Number of droplets that have been created
G4double fMinD; // Minimum distance allowed between faces of droplets when constructing random array of droplets
G4double fGridPitch;
// Pitch of collision detection grid. Must be greater than diameter of droplets for correctness of collision detection.
std::function<G4double (G4ThreeVector)> fDistribution;
G4double fAvgNumDens; // Average droplet number density
long int fNumDroplets = 0; // Number of droplets that have been created
// Ramdom engine
CLHEP::HepJamesRandom fCloudEngine;
long fSeed = 0; // Global random seed
G4double fGridPitch; // Pitch of collision detection grid. Must be greater than diameter of droplets for correctness of collision detection.
G4double fDropletsPerVoxel = 4.0;
// Expected number of droplets per voxel
// Ramdom engine
CLHEP::HepJamesRandom fCloudEngine;
long fSeed = 0; // Global random seed
// How far the voxel center must be inside the bulk
//order for there to be no risk of placing a droplet outside
G4double fEdgeDistance;
G4double fDropletsPerVoxel = 4.0; // Expected number of droplets per voxel
// Grid variables
std::vector<std::vector<G4ThreeVector>> fGrid;
// Grid of lists of inidices to grid points,
//used for fast collsion checking
// How far the voxel center must be inside the bulk order for there to be no risk of placing a droplet outside
G4double fEdgeDistance;
std::vector<G4double> fGridMean;
// Array listing mean count for each voxel
// Grid variables
std::vector<std::vector<G4ThreeVector>> fGrid;// Grid of lists of inidices to grid points, used for fast collsion checking
std::vector<G4double> fGridMean; // Array listing mean count for each voxel
std::atomic<bool> *fGridValid; // Array listing validity of each grid. uses atomic variables
std::atomic<bool> *fGridValid;
// Array listing validity of each grid. uses atomic variables
G4int fNx, fNy, fNz; // Number of x, y, and z elements in fGrid
G4int fNxy; // Cached fNx*fNy
long int fNumGridCells; // Cached fNx*fNy*fNz
G4int fNx, fNy, fNz; // Number of x, y, and z elements in fGrid
G4int fNxy; // Cached fNx*fNy
long int fNumGridCells; // Cached fNx*fNy*fNz
G4double fCollisionLimit2; // Threshold distance squared when checking for collsion
G4int fNumNewPointTries = 100; // How many times we try to place droplets
G4double fMaxDropPercent = 1.0; // The maximal percentage of skipped droplets before crashing0
G4int fMaxDropCount; // The maximal number of skipped droplets before crashing
G4int fNumDropped = 0; // Number of skipped droplets due to collisions/out of bulk placement
G4int fNumCollisions = 0; // How many collisions occured when attempting to place
// Droplet search variables
G4int fVectorSearchRadius; // maximum vector search radius
// Droplet placement functions
// ===========================
void InitializeGrid();
G4bool FindNewPoint(G4bool edgeVoxel, G4double dX, G4double dY, G4double dZ, G4double minX, G4double minY, G4double minZ, G4ThreeVector &foundVec);
G4double VoxelOverlap(G4ThreeVector voxelCenter, G4int nStat, G4double epsilon);
bool CheckCollision(G4double x, G4double y, G4double z);
bool CheckCollisionInsideGrid(G4double x, G4double y, G4double z, unsigned int xi, unsigned int yi, unsigned int zi);
bool CheckCollisionWithDroplet(G4double x, G4double y, G4double z, G4ThreeVector p);
// Droplet distance functions
// ==========================
void SearchSphere(G4int searchRad, G4double &minDistance, std::vector<G4ThreeVector> &candidates, std::vector<G4double> &distances2, G4int xGrid, G4int yGrid, G4int zGrid, const G4ThreeVector &p);
void GetNearestDropletInsideRegion(G4double &minDistance, G4ThreeVector &center, int xGrid, int yGrid, int zGrid, int xWidth, int yWidth, int zWidth, const G4ThreeVector &p, const G4ThreeVector &v, G4VSolid* droplet, std::function<G4RotationMatrix (G4ThreeVector)> rotation);
void GetNearestDropletInsideGrid(G4double &minDistance, std::vector<G4ThreeVector> &candidates, std::vector<G4double> &distances2, unsigned int xGrid, unsigned int yGrid, unsigned int zGrid, const G4ThreeVector &p);
void GetNearestDropletInsideGrid(G4double &minDistance, G4ThreeVector &center, unsigned int xGrid, unsigned int yGrid, unsigned int zGrid, const G4ThreeVector &p, const G4ThreeVector &v, G4VSolid* droplet, std::function<G4RotationMatrix (G4ThreeVector)> rotation);
// Voxelized sphere methods
// ========================
// a collection of points as in {{x1,y1},{x2,y2},...}
typedef std::vector<std::vector<int>> fCircleType;
// a collection of points describing a spherical shell
// with points (x,y,z)=(i-R,j-R,sphere[i][j][k])
// that is, first index gives x-position, second index
// gives y-position, and the value gives z-position
//
// this is done so that searching may be optimized:
// if searching some x=i-R that is outside the
// aerosol's bounding box, immediately increment i
// (similar for y).
typedef std::vector<std::vector<std::vector<int>>> fSphereType;
G4int fMaxCircleR;
G4int fMaxSphereR;
G4int fPreSphereR = 20;
std::vector<fCircleType> fCircleCollection;
std::vector<fSphereType> fSphereCollection;
G4double fCollisionLimit2;
// Threshold distance squared when checking for collsion
fSphereType MakeSphere(G4int R);
fCircleType MakeCircle(G4int R);
fCircleType MakeHalfCircle(G4int R);
G4int fNumNewPointTries = 100;
// How many times we try to place droplets
G4double fMaxDropPercent = 1.0;
// The maximal percentage of skipped droplets before crashing0
void PopulateGrid(unsigned int xi, unsigned int yi, unsigned int zi, unsigned int& gi);
G4int fMaxDropCount;
// The maximal number of skipped droplets before crashing
G4int fNumDropped = 0;
// Number of skipped droplets due to collisions/out of bulk placement
// ======
// Inline
// ======
inline bool GetGrid(const G4ThreeVector &p, G4int &xGrid, G4int &yGrid, G4int &zGrid);
inline bool AnyIndexOutOfBounds(G4int xGrid, G4int yGrid, G4int zGrid);
G4int fNumCollisions = 0;
// How many collisions occured when attempting to place
inline unsigned int GetGridIndex(unsigned int xi, unsigned int yi, unsigned int zi);
inline G4ThreeVector GetIndexCoord(G4int index);
// Droplet search variables
G4int fVectorSearchRadius;
// maximum vector search radius
inline std::pair<G4int, G4int> GetMinMaxSide(G4int index, G4int numGrids);
// Droplet placement functions
// ===========================
void InitializeGrid();
G4bool FindNewPoint(G4bool edgeVoxel, G4double dX, G4double dY, G4double dZ, G4double minX, G4double minY, G4double minZ, G4ThreeVector &foundVec);
G4double VoxelOverlap(G4ThreeVector voxelCenter, G4int nStat, G4double epsilon);
bool CheckCollision(G4double x, G4double y, G4double z);
bool CheckCollisionInsideGrid(G4double x, G4double y, G4double z, unsigned int xi, unsigned int yi, unsigned int zi);
bool CheckCollisionWithDroplet(G4double x, G4double y, G4double z, G4ThreeVector p);
// Droplet distance functions
// ==========================
void SearchSphere(G4int searchRad, G4double &minDistance, std::vector<G4ThreeVector> &candidates, std::vector<G4double> &distances2, G4int xGrid, G4int yGrid, G4int zGrid, const G4ThreeVector &p);
void GetNearestDropletInsideRegion(G4double &minDistance, G4ThreeVector &center, int xGrid, int yGrid, int zGrid, int xWidth, int yWidth, int zWidth, const G4ThreeVector &p, const G4ThreeVector &v, G4VSolid* droplet, std::function<G4RotationMatrix (G4ThreeVector)> rotation);
void GetNearestDropletInsideGrid(G4double &minDistance, std::vector<G4ThreeVector> &candidates, std::vector<G4double> &distances2, unsigned int xGrid, unsigned int yGrid, unsigned int zGrid, const G4ThreeVector &p);
void GetNearestDropletInsideGrid(G4double &minDistance, G4ThreeVector &center, unsigned int xGrid, unsigned int yGrid, unsigned int zGrid, const G4ThreeVector &p, const G4ThreeVector &v, G4VSolid* droplet, std::function<G4RotationMatrix (G4ThreeVector)> rotation);
// Voxelized sphere methods
// ========================
// a collection of points as in {{x1,y1},{x2,y2},...}
typedef std::vector<std::vector<int>> fCircleType;
// a collection of points describing a spherical shell
// with points (x,y,z)=(i-R,j-R,sphere[i][j][k])
// that is, first index gives x-position, second index
// gives y-position, and the value gives z-position
//
// this is done so that searching may be optimized:
// if searching some x=i-R that is outside the
// aerosol's bounding box, immediately increment i
// (similar for y).
typedef std::vector<std::vector<std::vector<int>>> fSphereType;
G4int fMaxCircleR;
G4int fMaxSphereR;
G4int fPreSphereR = 20;
std::vector<fCircleType> fCircleCollection;
std::vector<fSphereType> fSphereCollection;
fSphereType MakeSphere(G4int R);
fCircleType MakeCircle(G4int R);
fCircleType MakeHalfCircle(G4int R);
void PopulateGrid(unsigned int xi, unsigned int yi, unsigned int zi, unsigned int& gi);
// ======
// Inline
// ======
inline bool GetGrid(const G4ThreeVector &p, G4int &xGrid, G4int &yGrid, G4int &zGrid);
inline bool AnyIndexOutOfBounds(G4int xGrid, G4int yGrid, G4int zGrid);
inline unsigned int GetGridIndex(unsigned int xi, unsigned int yi, unsigned int zi);
inline G4ThreeVector GetIndexCoord(G4int index);
inline std::pair<G4int, G4int> GetMinMaxSide(G4int index, G4int numGrids);
};
#include "FastAerosol.icc"
examples/advanced/fastAerosol/include/FastAerosolSolid.hh
+65 -64
View File
@@ -58,93 +58,94 @@
class FastAerosolSolid : public G4VSolid
{
public:
FastAerosolSolid(const G4String& pName,
FastAerosol* pCloud,
G4VSolid* pDroplet,
std::function<G4RotationMatrix (G4ThreeVector)> pRotation);
public:
FastAerosolSolid(const G4String& pName, FastAerosol* pCloud,
G4VSolid* pDroplet,
std::function<G4RotationMatrix (G4ThreeVector)> pRotation);
FastAerosolSolid(const G4String& pName,
FastAerosol* pCloud,
G4VSolid* pDroplet);
~FastAerosolSolid();
FastAerosolSolid(const G4String& pName, FastAerosol* pCloud,
G4VSolid* pDroplet);
~FastAerosolSolid()=default;
// Access functions
inline G4double GetCubicVolume();
inline G4double GetSurfaceArea();
// Access functions
inline G4double GetCubicVolume();
inline G4double GetSurfaceArea();
// Solid standard methods
G4bool CalculateExtent(const EAxis pAxis,
const G4VoxelLimits& pVoxelLimit,
const G4AffineTransform& pTransform,
G4double& pmin, G4double& pmax) const;
EInside Inside(const G4ThreeVector& p) const;
G4ThreeVector SurfaceNormal( const G4ThreeVector& p) const;
G4double DistanceToIn(const G4ThreeVector& p,
const G4ThreeVector& v) const;
G4double DistanceToIn(const G4ThreeVector& p) const;
G4double DistanceToOut(const G4ThreeVector& p,
const G4ThreeVector& v,
const G4bool calcNorm=G4bool(false),
G4bool *validNorm=0,
G4ThreeVector *n=0) const;
G4double DistanceToOut(const G4ThreeVector& p) const;
// Solid standard methods
G4bool CalculateExtent(const EAxis pAxis,
const G4VoxelLimits& pVoxelLimit,
const G4AffineTransform& pTransform,
G4double& pmin, G4double& pmax) const;
G4GeometryType GetEntityType() const;
EInside Inside(const G4ThreeVector& p) const;
G4ThreeVector SurfaceNormal(const G4ThreeVector& p) const;
G4double DistanceToIn(const G4ThreeVector& p,
const G4ThreeVector& v) const;
G4VSolid* Clone() const;
G4double DistanceToIn(const G4ThreeVector& p) const;
G4double DistanceToOut(const G4ThreeVector& p,
const G4ThreeVector& v,
const G4bool calcNorm=G4bool(false),
G4bool *validNorm=0, G4ThreeVector *n=0) const;
G4double DistanceToOut(const G4ThreeVector& p) const;
std::ostream& StreamInfo(std::ostream& os) const;
G4GeometryType GetEntityType() const;
G4ThreeVector GetPointOnSurface() const;
G4VSolid* Clone() const;
G4Polyhedron* GetPolyhedron () const;
void DescribeYourselfTo(G4VGraphicsScene& scene) const;
G4VisExtent GetExtent() const;
G4Polyhedron* CreatePolyhedron() const;
std::ostream& StreamInfo(std::ostream& os) const;
G4ThreeVector GetPointOnSurface() const;
public: // without description
FastAerosolSolid(__void__&);
//
// Fake default constructor for usage restricted to direct object
// persistency for clients requiring preallocation of memory for
// persistifiable objects.
G4Polyhedron* GetPolyhedron () const;
void DescribeYourselfTo(G4VGraphicsScene& scene) const;
G4VisExtent GetExtent() const;
G4Polyhedron* CreatePolyhedron() const;
FastAerosolSolid(const FastAerosolSolid& rhs);
FastAerosolSolid& operator=(const FastAerosolSolid& rhs);
// Copy constructor and assignment operator.
public: // without description
FastAerosolSolid(__void__&);
//
// Fake default constructor for usage restricted to direct object
// persistency for clients requiring preallocation of memory for
// persistifiable objects.
inline void SetStepLim(G4double newLim);
FastAerosolSolid(const FastAerosolSolid& rhs);
FastAerosolSolid& operator=(const FastAerosolSolid& rhs);
// Copy constructor and assignment operator.
private:
inline void SetStepLim(G4double newLim);
private:
inline void Initialize();
//
// Reset relevant values to zero
inline void Initialize();
//
// Reset relevant values to zero
G4double fStepLim = DBL_MAX; // Maximum step length. Allows speed up in droplet search
G4double fStepLim = DBL_MAX; // Maximum step length. Allows speed up in droplet search
FastAerosol* fCloud; // FastAerosol which handles brunt of work
G4VSolid* fDroplet; // Droplet shape
G4VSolid* fBulk; // Aerosol bulk
FastAerosol* fCloud; // FastAerosol which handles brunt of work
G4VSolid* fDroplet; // Droplet shape
G4VSolid* fBulk; // Aerosol bulk
G4double fR = 0.0; // Droplet bounding radius
G4double fR = 0.0; // Droplet bounding radius
G4double fVisDx, fVisDy, fVisDz; // Visual extent
G4double fVisDx, fVisDy, fVisDz; // Visual extent
G4double fCubicVolume = 0.0; // Cubic volume of all droplets
G4double fSurfaceArea = 0.0; // Surface area of all droplets
G4double fCubicVolume = 0.0; // Cubic volume of all droplets
G4double fSurfaceArea = 0.0; // Surface area of all droplets
G4double farFromCloudDist;
G4double farFromCloudDist;
std::function<G4RotationMatrix (G4ThreeVector)> fRotation; // rotation function
std::function<G4RotationMatrix (G4ThreeVector)> fRotation;
// rotation function
protected: // without description
protected: // without description
mutable G4bool fRebuildPolyhedron;
mutable G4Polyhedron* fpPolyhedron;
mutable G4bool fRebuildPolyhedron;
mutable G4Polyhedron* fpPolyhedron;
};
#include "FastAerosolSolid.icc"
examples/advanced/fastAerosol/src/FAActionInitialization.cc
+3 -7
View File
@@ -23,7 +23,6 @@
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
// (copied from B1ActionInitialization)
#include "FAActionInitialization.hh"
@@ -36,12 +35,9 @@ ActionInitialization::ActionInitialization()
: G4VUserActionInitialization()
{}
ActionInitialization::~ActionInitialization()
{}
void ActionInitialization::BuildForMaster() const
{
RunAction* runAction = new RunAction;
auto* runAction = new RunAction;
SetUserAction(runAction);
}
@@ -49,10 +45,10 @@ void ActionInitialization::Build() const
{
SetUserAction(new PrimaryGeneratorAction);
RunAction* runAction = new RunAction;
auto* runAction = new RunAction;
SetUserAction(runAction);
EventAction* eventAction = new EventAction(runAction);
auto* eventAction = new EventAction(runAction);
SetUserAction(eventAction);
SetUserAction(new SteppingAction(eventAction));
examples/advanced/fastAerosol/src/FACloudParameterisation.cc
+2 -6
View File
@@ -23,7 +23,6 @@
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
// (adapted from B2bChamberParameterisation)
// Author: A.Knaian (ara@nklabs.com), N.MacFadden (natemacfadden@gmail.com)
@@ -38,14 +37,11 @@ CloudParameterisation::CloudParameterisation(
const std::vector<G4ThreeVector>& positions)
: G4VPVParameterisation()
{
fPositions = positions;
fPositions = positions;
}
CloudParameterisation::~CloudParameterisation()
{ }
void CloudParameterisation::ComputeTransformation
(const G4int copyNo, G4VPhysicalVolume* physVol) const
{
physVol->SetTranslation(fPositions[copyNo]);
}
}
examples/advanced/fastAerosol/src/FADetectorConstruction.cc
+365 -427
View File
@@ -63,499 +63,437 @@
// to save distribution
#include <sys/stat.h>
#include <ctime> // for measuring FastAerosol droplet center population time
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
#include <ctime>
// for measuring FastAerosol droplet center population time
DetectorConstruction::DetectorConstruction()
: G4VUserDetectorConstruction(),
fScoringVolume(0)
fScoringVolume(nullptr)
{
fMessenger = new DetectorConstructionMessenger(this);
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
DetectorConstruction::~DetectorConstruction()
{
delete fMessenger;
delete fStepLimits;
delete fCloudShape;
delete fDropletShape;
delete fCloud;
delete fMessenger;
delete fStepLimits;
delete fCloudShape;
delete fDropletShape;
delete fCloud;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
G4VPhysicalVolume* DetectorConstruction::Construct()
{
//
// Check cloud build settings
//
if (fFastAerosolCloud + fParameterisedCloud + fSmoothCloud > 1)
{
std::ostringstream message;
message << "Must select at most one build type! Selections:" << G4endl
<< " fFastAerosolCloud = " << fFastAerosolCloud << G4endl
<< " fParameterisedCloud = " << fParameterisedCloud << G4endl
<< " fSmoothCloud = " << fSmoothCloud << G4endl;
//
// Check cloud build settings
//
if (fFastAerosolCloud + fParameterisedCloud + fSmoothCloud > 1)
{
std::ostringstream message;
message << "Must select at most one build type! Selections:" << G4endl
<< " fFastAerosolCloud = " << fFastAerosolCloud << G4endl
<< " fParameterisedCloud = " << fParameterisedCloud << G4endl
<< " fSmoothCloud = " << fSmoothCloud << G4endl;
G4Exception("DetectorConstruction::Construct()", "GeomSolids0002",
FatalException, message);
}
//
// Get nist material manager
//
G4NistManager* nist = G4NistManager::Instance();
//
// Option to switch on/off checking of volumes overlaps
//
G4bool checkOverlaps = false;
//
// Large scale geometry dimensions
//
G4double cloud_sizeXY = 0.5*m;
G4double cloud_sizeZ = 5.0*m;
G4double world_sizeXY = 1.1*(cloud_sizeXY);
G4double world_sizeZ= 1.1*(cloud_sizeZ);
//
// Cloud shape
//
if (fCloudShapeStr == "box")
{
G4cout << "Cloud shape = box" << G4endl;
fCloudShape = new G4Box("cloudShape", 0.5*cloud_sizeXY, 0.5*cloud_sizeXY, 0.5*cloud_sizeZ);
}
else if (fCloudShapeStr == "ellipsoid")
{
G4cout << "Cloud shape = ellipsoid" << G4endl;
fCloudShape = new G4Ellipsoid("cloudShape", 0.5*cloud_sizeXY, 0.5*cloud_sizeXY, 0.5*cloud_sizeZ, 0, 0);
}
else if (fCloudShapeStr == "cylinder")
{
G4cout << "Cloud shape = cylinder" << G4endl;
fCloudShape = new G4Tubs("cloudShape", 0.0, 0.5*cloud_sizeXY, 0.5*cloud_sizeZ, 0, 360*deg);
}
else if (fCloudShapeStr == "pipe")
{
G4cout << "Cloud shape = pipe" << G4endl;
fCloudShape = new G4Tubs("cloudShape", 0.25*cloud_sizeXY, 0.5*cloud_sizeXY, 0.5*cloud_sizeZ, 0, 360.*deg);
}
else
{
std::ostringstream message;
message << "Invalid cloud shape = " << fCloudShapeStr << "!";
G4Exception("DetectorConstruction::Construct()", "GeomSolids0002",
FatalException, message);
}
//
// Droplet Shape
//
// The difference in radii of the maximal sphere (centered at the origin) contained in the droplet and the minimal sphere (centered at the origin) containing the droplet
G4double sphericalUncertainty = 0.0;
if (fDropletShapeStr == "sphere")
{
G4cout << "Droplet shape = sphere" << G4endl;
fDropletShape = new G4Orb("dropletSV", fDropletR);
sphericalUncertainty = 0.0;
}
else if (fDropletShapeStr == "halfSphere")
{
G4cout << "Droplet shape = halfSphere" << G4endl;
fDropletShape = new G4Sphere("dropletSV", 0.0, fDropletR, 0.0, 180.*deg, 0.0, 180.*deg);
sphericalUncertainty = fDropletR;
}
else if (fDropletShapeStr == "cylinder")
{
G4cout << "Droplet shape = cylinder" << G4endl;
fDropletShape = new G4Tubs("dropletSV", 0, fDropletR/std::sqrt(3), fDropletR/std::sqrt(3), 0, 360.*deg);
sphericalUncertainty = fDropletR*(1-1/std::sqrt(3));
}
else if (fDropletShapeStr == "box")
{
G4cout << "Droplet shape = box" << G4endl;
fDropletShape = new G4Box("dropletSV", fDropletR/std::sqrt(3), fDropletR/std::sqrt(3), fDropletR/std::sqrt(3));
sphericalUncertainty = fDropletR*(1-1/std::sqrt(3));
}
else
{
std::ostringstream message;
message << "Invalid droplet shape = " << fCloudShapeStr << "!";
G4Exception("DetectorConstruction::Construct()", "GeomSolids0002",
FatalException, message);
}
//
// Materials
//
// Compute the density of air at 14 km using the Barometric formula
// see, e.g., https://en.wikipedia.org/wiki/Density_of_air
G4double h = 14.0*km;
G4double p0 = 101325*hep_pascal;
G4double T0 = 288.15*kelvin;
G4double grav = 9.80665*m/(s*s);
G4double La = 0.0065*kelvin/m;
G4double R = 8.31447*joule/(mole*kelvin);
G4double M = 0.0289644*kg/mole;
G4double T = T0 - La*h;
G4double p = p0*std::pow(1-La*h/T0,grav*M/(R*La));
G4double air_density = p*M/(R*T);
//
// Get nist material manager
//
G4NistManager* nist = G4NistManager::Instance();
// make materials and set densities
G4Material* air_mat = nist->BuildMaterialWithNewDensity("Atmosphere","G4_AIR",air_density);
G4Material* water_mat = nist->FindOrBuildMaterial("G4_WATER");
//
// Option to switch on/off checking of volumes overlaps
//
G4bool checkOverlaps = false;
//
// Large scale geometry dimensions
//
G4double cloud_sizeXY = 0.5*m;
G4double cloud_sizeZ = 5.0*m;
G4double world_sizeXY = 1.1*(cloud_sizeXY);
G4double world_sizeZ= 1.1*(cloud_sizeZ);
//
// Cloud shape
//
if (fCloudShapeStr == "box")
{
G4cout << "Cloud shape = box" << G4endl;
fCloudShape = new G4Box("cloudShape", 0.5*cloud_sizeXY, 0.5*cloud_sizeXY, 0.5*cloud_sizeZ);
}
else if (fCloudShapeStr == "ellipsoid")
{
G4cout << "Cloud shape = ellipsoid" << G4endl;
fCloudShape = new G4Ellipsoid("cloudShape", 0.5*cloud_sizeXY, 0.5*cloud_sizeXY, 0.5*cloud_sizeZ, 0, 0);
}
else if (fCloudShapeStr == "cylinder")
{
G4cout << "Cloud shape = cylinder" << G4endl;
fCloudShape = new G4Tubs("cloudShape", 0.0, 0.5*cloud_sizeXY, 0.5*cloud_sizeZ, 0, 360*deg);
}
else if (fCloudShapeStr == "pipe")
{
G4cout << "Cloud shape = pipe" << G4endl;
fCloudShape = new G4Tubs("cloudShape", 0.25*cloud_sizeXY, 0.5*cloud_sizeXY, 0.5*cloud_sizeZ, 0, 360.*deg);
}
else
{
std::ostringstream message;
message << "Invalid cloud shape = " << fCloudShapeStr << "!";
G4Exception("DetectorConstruction::Construct()", "GeomSolids0002",
FatalException, message);
}
//
// Droplet Shape
//
// The difference in radii of the maximal sphere (centered at the origin) contained in the droplet and the minimal sphere (centered at the origin) containing the droplet
G4double sphericalUncertainty = 0.0;
if (fDropletShapeStr == "sphere")
{
G4cout << "Droplet shape = sphere" << G4endl;
fDropletShape = new G4Orb("dropletSV", fDropletR);
sphericalUncertainty = 0.0;
}
else if (fDropletShapeStr == "halfSphere")
{
G4cout << "Droplet shape = halfSphere" << G4endl;
fDropletShape = new G4Sphere("dropletSV", 0.0, fDropletR,
0.0, 180.*deg,
0.0, 180.*deg);
sphericalUncertainty = fDropletR;
}
else if (fDropletShapeStr == "cylinder")
{
G4cout << "Droplet shape = cylinder" << G4endl;
fDropletShape = new G4Tubs("dropletSV", 0, fDropletR/std::sqrt(3), fDropletR/std::sqrt(3), 0, 360.*deg);
sphericalUncertainty = fDropletR*(1-1/std::sqrt(3));
}
else if (fDropletShapeStr == "box")
{
G4cout << "Droplet shape = box" << G4endl;
fDropletShape = new G4Box("dropletSV", fDropletR/std::sqrt(3), fDropletR/std::sqrt(3), fDropletR/std::sqrt(3));
sphericalUncertainty = fDropletR*(1-1/std::sqrt(3));
}
else
{
std::ostringstream message;
message << "Invalid droplet shape = " << fCloudShapeStr << "!";
G4Exception("DetectorConstruction::Construct()", "GeomSolids0002",
FatalException, message);
}
//
// Materials
//
// Compute the density of air at 14 km using the Barometric formula
// see, e.g., https://en.wikipedia.org/wiki/Density_of_air
G4double h = 14.0*km;
G4double p0 = 101325*hep_pascal;
G4double T0 = 288.15*kelvin;
G4double grav = 9.80665*m/(s*s);
G4double La = 0.0065*kelvin/m;
G4double R = 8.31447*joule/(mole*kelvin);
G4double M = 0.0289644*kg/mole;
G4double T = T0 - La*h;
G4double p = p0*std::pow(1-La*h/T0,grav*M/(R*La));
G4double air_density = p*M/(R*T);
// make materials and set densities
G4Material* air_mat = nist->BuildMaterialWithNewDensity("Atmosphere","G4_AIR",air_density);
G4Material* water_mat = nist->FindOrBuildMaterial("G4_WATER");
G4double water_density = water_mat->GetDensity();
G4double ice_density = 0.9168*g/cm3;
G4double water_density = water_mat->GetDensity();
G4double ice_density = 0.9168*g/cm3;
G4Material* ice_mat = new G4Material("Water ice ", ice_density, 1, kStateSolid, T, p);
ice_mat->AddMaterial(water_mat, 1.);
G4Material* ice_mat = new G4Material("Water ice ", ice_density, 1, kStateSolid, T, p);
ice_mat->AddMaterial(water_mat, 1.);
//
// Droplets
//
G4double droplet_density = water_density;
G4Material* droplet_mat = water_mat;
//
// Droplets
//
G4double droplet_density = water_density;
G4Material* droplet_mat = water_mat;
G4double droplet_count = fDropletNumDens*(fCloudShape->GetCubicVolume());
G4double droplet_count = fDropletNumDens*(fCloudShape->GetCubicVolume());
G4double droplet_volume = fDropletShape->GetCubicVolume();
G4double droplet_total_volume = droplet_count*droplet_volume;
G4double droplet_volume = fDropletShape->GetCubicVolume();
G4double droplet_total_volume = droplet_count*droplet_volume;
G4double droplet_total_mass = droplet_total_volume*droplet_density;
G4double droplet_total_mass = droplet_total_volume*droplet_density;
//
// Cloud macroscopic quantities
//
G4double cloud_volume = fCloudShape->GetCubicVolume();
G4double cloud_air_volume = cloud_volume - droplet_total_volume;
G4double cloud_air_mass = air_density*cloud_air_volume;
//
// Step limit
//
fStepLimits = new G4UserLimits(fStepLim);
//
// Cloud macroscopic quantities
//
G4double cloud_volume = fCloudShape->GetCubicVolume();
G4double cloud_air_volume = cloud_volume - droplet_total_volume;
G4double cloud_air_mass = air_density*cloud_air_volume;
//
// Build world
//
G4Box* solidWorld =new G4Box("World",//its name
0.5*world_sizeXY,//half x-span
0.5*world_sizeXY,//half y-span
0.5*world_sizeZ);//half z-span
G4LogicalVolume* logicWorld =
new G4LogicalVolume(solidWorld, //its solid
air_mat, //its material
"World");//its name
//
// Step limit
//
fStepLimits = new G4UserLimits(fStepLim);
//
// Build world
//
G4Box* solidWorld =
new G4Box("World", //its name
0.5*world_sizeXY, //half x-span
0.5*world_sizeXY, //half y-span
0.5*world_sizeZ); //half z-span
G4LogicalVolume* logicWorld =
new G4LogicalVolume(solidWorld, //its solid
air_mat, //its material
"World"); //its name
logicWorld->SetUserLimits(fStepLimits);
logicWorld->SetUserLimits(fStepLimits);
G4VPhysicalVolume* physWorld =
new G4PVPlacement(0, //no rotation
G4ThreeVector(), //at (0,0,0)
logicWorld, //its logical volume
"World", //its name
0, //its mothervolume
false, //no boolean operation
0, //copy number
checkOverlaps); //overlaps checking
G4VPhysicalVolume* physWorld = new G4PVPlacement(nullptr,//no rotation
G4ThreeVector(),//at (0,0,0)
logicWorld,//its logical volume
"World",//its name
nullptr,//its mothervolume
false,//no boolean operation
0, //copy number
checkOverlaps); //overlaps checking
//
// Build cloud
//
G4LogicalVolume* logicCloud;
//
// Build cloud
//
G4LogicalVolume* logicCloud;
// **********************************************************
//
// Build the cloud using the FastAerosol geometry class
//
// ***********************************************************
// **********************************************************
//
// Build the cloud using the FastAerosol geometry class
//
// ***********************************************************
if (fFastAerosolCloud) {
G4cout << "\nFastAerosol geometry with n=" << fDropletNumDens*mm3 << "/mm3, r=" << fDropletR/mm << "mm spheres.\n" << G4endl;
if (fFastAerosolCloud)
{
G4cout << "\nFastAerosol geometry with n=" << fDropletNumDens*mm3 << "/mm3, r=" << fDropletR/mm << "mm spheres.\n" << G4endl;
fCloud = new FastAerosol("cloud",
fCloudShape, //cloud shape
fDropletR, //bounding radius of droplets
fMinSpacing, //minimum spacing between droplets
fDropletNumDens, //approximate number of droplets in cloud
sphericalUncertainty); //uncertainty in distance to droplet surface from outside using just droplet's origin as info
fCloud->SetDropletsPerVoxel(4);
/*
fCloud = new FastAerosol("fCloud",
fCloudShape, //cloud shape
fDropletR, //bounding radius of droplets
fMinSpacing, //minimum spacing between droplets
fDropletNumDens, //approximate number of droplets in cloud
sphericalUncertainty, //uncertainty in distance to droplet surface from outside using just droplet's origin as info
[](G4ThreeVector pos) {return pos.x();}); //number density distribution function
*/
fCloud = new FastAerosol("cloud", fCloudShape,//cloud shape
fDropletR, //bounding radius of droplets
fMinSpacing,//minimum spacing between droplets
fDropletNumDens, //approximate number of droplets in cloud
sphericalUncertainty); //uncertainty in distance to droplet surface from outside using just droplet's origin as info
fCloud->SetDropletsPerVoxel(4);
FastAerosolSolid* solidCloud =
new FastAerosolSolid("cloudSV", //its name
fCloud, //its shape
fDropletShape); //its droplets
FastAerosolSolid* solidCloud = new FastAerosolSolid("cloudSV",//its name
fCloud, //its shape
fDropletShape); //its droplets
/*
FastAerosolSolid* solidCloud =
new FastAerosolSolid("cloudSV", //its name
fCloud, //its shape
fDropletShape, //its droplets
[](G4ThreeVector) {G4RotationMatrix rotm = G4RotationMatrix(); rotm.rotateY(90.0*deg); return rotm;}); //droplet rotation function
*/
solidCloud->SetStepLim(fStepLim);
//FastAerosol can use step limit to speed calculations
solidCloud->SetStepLim(fStepLim); //FastAerosol can use step limit to speed calculations
logicCloud = new G4LogicalVolume(solidCloud,//its solid
droplet_mat,//its material
"cloudLV");//its name
logicCloud->SetUserLimits(fStepLimits);
logicCloud->SetVisAttributes(G4VisAttributes(G4Colour(0.0,0.0,1.0,0.4)));
logicCloud =
new G4LogicalVolume(solidCloud, //its solid
droplet_mat, //its material
"cloudLV"); //its name
logicCloud->SetUserLimits(fStepLimits);
logicCloud->SetVisAttributes(G4VisAttributes(G4Colour(0.0,0.0,1.0,0.4)));
new G4PVPlacement(nullptr, G4ThreeVector(), logicCloud, "cloudPV", //its name
logicWorld,//its mother volume
false, //no boolean operation
0,//copy number
checkOverlaps);//overlaps checking
new G4PVPlacement(0, //no rotation
G4ThreeVector(), //at position
logicCloud, //its logical volume
"cloudPV", //its name
logicWorld, //its mother volume
false, //no boolean operation
0, //copy number
checkOverlaps); //overlaps checking
fCloud->SetSeed(fCloudSeed);
// fPrePopulate = whether to populate all voxels at the beginning or on the fly
if (fPrePopulate)
{
// populate (proving it to the user by printing population reports)
clock_t t;
t = clock();
fCloud->SetSeed(fCloudSeed);
G4cout << "\nBefore populating" << G4endl;
G4cout << "=================" << G4endl;
fCloud->PrintPopulationReport();
G4cout << "\nPopulating..." << G4endl;
fCloud->PopulateAllGrids();
G4cout << "\nAfter populating" << G4endl;
G4cout << "================" << G4endl;
fCloud->PrintPopulationReport();
G4cout << G4endl;
// fPrePopulate = whether to populate all voxels at the beginning or on the fly
if (fPrePopulate) {
// populate (proving it to the user by printing population reports)
clock_t t;
t = clock();
t = clock() - t;
G4cout << "\nBefore populating" << G4endl;
G4cout << "=================" << G4endl;
fCloud->PrintPopulationReport();
G4cout << "\nPopulating..." << G4endl;
fCloud->PopulateAllGrids();
G4cout << "\nAfter populating" << G4endl;
G4cout << "================" << G4endl;
fCloud->PrintPopulationReport();
G4cout << G4endl;
G4cout << "\nThis took " << ((float)t)/CLOCKS_PER_SEC << "s\n" << G4endl;
t = clock() - t;
// make filename variables to save data
G4String rStr = std::to_string(fDropletR/mm);
rStr.erase ( rStr.find_last_not_of('0') + 1, std::string::npos ); // drop trailing 0
replace( rStr.begin(), rStr.end(), '.', 'p');
if (rStr.back() == 'p') { rStr.pop_back(); } // don't write "3p" for 3.0, just write "3"
G4cout << "\nThis took " << ((float)t)/CLOCKS_PER_SEC << "s\n" << G4endl;
// want to represent the number density as 1E-ApB for some A, B
G4int order10 = (G4int) -round(10*std::log10(fDropletNumDens*mm3)); // gives 10x the exponent rounded to the int (10x so we get two decimals)
G4int leading = order10 / 10; // first number
G4int trailing = order10 % 10; // second number
G4String nStr = "1E-" + std::to_string(leading) + "p" + std::to_string(trailing);
// make filename variables to save data
G4String rStr = std::to_string(fDropletR/mm);
rStr.erase ( rStr.find_last_not_of('0') + 1, std::string::npos ); // drop trailing 0
replace( rStr.begin(), rStr.end(), '.', 'p');
if (rStr.back() == 'p') { rStr.pop_back(); } // don't write "3p" for 3.0, just write "3"
// save population time
std::ofstream file;
file.open("popTime_r" + rStr + "mm_n" + nStr + "mm-3.csv");
file << ((float)t)/CLOCKS_PER_SEC;
file.close();
// want to represent the number density as 1E-ApB for some A, B
G4int order10 = (G4int) -round(10*std::log10(fDropletNumDens*mm3)); // gives 10x the exponent rounded to the int (10x so we get two decimals)
G4int leading = order10 / 10; // first number
G4int trailing = order10 % 10; // second number
G4String nStr = "1E-" + std::to_string(leading) + "p" + std::to_string(trailing);
// save population time
std::ofstream file;
file.open("popTime_r" + rStr + "mm_n" + nStr + "mm-3.csv");
file << ((float)t)/CLOCKS_PER_SEC;
file.close();
// save distribution
G4String fName = "distribution_r" + rStr + "mm_n" + nStr + "mm-3.csv";
fCloud->SaveToFile(fName);
}
}
// **********************************************************
//
// (For comparision/benchmarking) Build the cloud using G4VParameterized (does not use FastAerosol)
//
// ***********************************************************
// the droplet positions for this cloud are those saved in the "distribution" folder of our data
// this is to make comparable simulations between FastAerosol and parameterised clouds
// this requires that we first simulate FastAerosol (pre-populated) to generate the positions
// save distribution
G4String fName = "distribution_r" + rStr + "mm_n" + nStr + "mm-3.csv";
fCloud->SaveToFile(fName);
}
}
// **********************************************************
//
// (For comparision/benchmarking) Build the cloud using G4VParameterized (does not use FastAerosol)
//
// ***********************************************************
// the droplet positions for this cloud are those saved in the "distribution" folder of our data
// this is to make comparable simulations between FastAerosol and parameterised clouds
// this requires that we first simulate FastAerosol (pre-populated) to generate the positions
else if (fParameterisedCloud)
{
G4cout << "\nParameterised geometry with n=" << fDropletNumDens*mm3 << "/mm3 and r=" << fDropletR/mm << "mm spheres.\n" << G4endl;
else if (fParameterisedCloud)
{
G4cout << "\nParameterised geometry with n=" << fDropletNumDens*mm3 << "/mm3 and r=" << fDropletR/mm << "mm spheres.\n" << G4endl;
std::vector<G4ThreeVector> positions;
G4double x,y,z;
// load distribution file
G4String fName;
G4String rStr = std::to_string(fDropletR/mm);
// load distribution file
G4String fName;
G4String rStr = std::to_string(fDropletR/mm);
rStr.erase ( rStr.find_last_not_of('0') + 1, std::string::npos ); // drop trailing 0
replace( rStr.begin(), rStr.end(), '.', 'p');
if (rStr.back() == 'p') { rStr.pop_back(); } // don't write "3p" for 3.0, just write "3"
// want to represent the number density as 1E-ApB for some A, B
G4int order10 = (G4int) -round(10*std::log10(fDropletNumDens*mm3)); // gives 10x the exponent rounded to the int (10x so we get two decimals)
G4int leading = order10 / 10; // first number
G4int trailing = order10 % 10; // second number
G4String nStr = "1E-" + std::to_string(leading) + "p" + std::to_string(trailing);
// want to represent the number density as 1E-ApB for some A, B
G4int order10 = (G4int) -round(10*std::log10(fDropletNumDens*mm3)); // gives 10x the exponent rounded to the int (10x so we get two decimals)
G4int leading = order10 / 10; // first number
G4int trailing = order10 % 10; // second number
G4String nStr = "1E-" + std::to_string(leading) + "p" + std::to_string(trailing);
fName = "distribution_r" + rStr + "mm_n" + nStr + "mm-3.csv";
std::ifstream infile(fName);
std::string line;
fName = "distribution_r" + rStr + "mm_n" + nStr + "mm-3.csv";
std::ifstream infile(fName);
std::string line;
while (getline(infile,line)) {
std::istringstream stream(line);
std::string field;
while (getline(infile,line)) {
std::istringstream stream(line);
std::string field;
getline(stream,field,','); x = stod(field)*mm;
getline(stream,field,','); y = stod(field)*mm;
getline(stream,field,','); z = stod(field)*mm;
getline(stream,field,','); x = stod(field)*mm;
getline(stream,field,','); y = stod(field)*mm;
getline(stream,field,','); z = stod(field)*mm;
positions.push_back(G4ThreeVector(x,y,z));
positions.push_back(G4ThreeVector(x,y,z));
}
G4VPVParameterisation* cloudParam =
G4VPVParameterisation* cloudParam =
new CloudParameterisation(positions);
G4Box* cloudBounding =
new G4Box("cloudBounding", //its name
0.5*cloud_sizeXY, //half x-span
0.5*cloud_sizeXY, //half y-span
0.5*cloud_sizeZ); //half z-span
logicCloud =
new G4LogicalVolume(cloudBounding, //its solid
air_mat, //its material
"cloudLV"); //its name
logicCloud->SetSmartless(fSmartless);
logicCloud->SetUserLimits(fStepLimits);
logicCloud->SetVisAttributes(G4VisAttributes(false));
new G4PVPlacement(0, //no rotation
G4ThreeVector(), //at position
logicCloud, //its logical volume
"cloudPV", //its name
logicWorld, //its mothervolume
false, //no boolean operation
0, //copy number
checkOverlaps); //overlaps checking
G4LogicalVolume* logicDroplet =
new G4LogicalVolume(fDropletShape, //its solid
droplet_mat, //its material
"dropletLV"); //its name
logicDroplet->SetUserLimits(fStepLimits);
/*G4PVParameterised* paramDroplet =*/
new G4PVParameterised("droplets", //its name
logicDroplet, //droplet logical volume
logicCloud, //mother logical volume
kUndefined, //droplets placed along this axis
positions.size(), //number of droplets
cloudParam); //the parametrisation
}
// **********************************************************
//
// (For comparision/benchmarking) Simulate the cloud by smearing droplets out into a single solid (does not use FastAerosol)
//
// ***********************************************************
else if (fSmoothCloud)
{
G4cout << "\nSmooth geometry based on a cloud of n=" << fDropletNumDens*mm3 << "/mm3 and r=" << fDropletR/mm << "mm spheres.\n" << G4endl;
// build cloud by smearing the droplets uniformly across the cloud volume, for comparison/benchmarking purposes (does not use FastAerosol)
G4Material* cloud_mat = new G4Material("Cloud", (droplet_total_mass+cloud_air_mass)/cloud_volume, 2);
cloud_mat->AddMaterial(droplet_mat, droplet_total_mass/(cloud_air_mass+droplet_total_mass));
cloud_mat->AddMaterial(air_mat, cloud_air_mass/(cloud_air_mass+droplet_total_mass));
logicCloud =
new G4LogicalVolume(fCloudShape, //its solid
cloud_mat, //its material
"cloudLV"); //its name
logicCloud->SetUserLimits(fStepLimits);
logicCloud->SetVisAttributes(G4VisAttributes(G4Colour(0.0,0.0,1.0,0.4)));
new G4PVPlacement(0, //no rotation
G4ThreeVector(), //at position
logicCloud, //its logical volume
"cloudPV", //its name
logicWorld, //its mothervolume
false, //no boolean operation
0, //copy number
checkOverlaps); //overlaps checking
}
else
{
G4cout << "\nNo cloud.\n" << G4endl;
}
//
// Build detector
//
G4double detector_sizeXY = cloud_sizeXY;
G4double detector_sizeZ = 0.05*m;
G4Material* detector_mat = nist->FindOrBuildMaterial("G4_Al");
G4ThreeVector detector_pos = G4ThreeVector(0, 0, 0.5*1.05*cloud_sizeZ);
G4Box* soldDetector =
new G4Box("detectorSV", //its name
0.5*detector_sizeXY, //half x-span
0.5*detector_sizeXY, //half y-span
0.5*detector_sizeZ); //half z-span
G4Box* cloudBounding = new G4Box("cloudBounding",//its name
0.5*cloud_sizeXY,//half x-span
0.5*cloud_sizeXY, //half y-span
0.5*cloud_sizeZ); //half z-span
G4LogicalVolume* logicDetector =
logicCloud = new G4LogicalVolume(cloudBounding, //its solid
air_mat,//its material
"cloudLV");//its name
logicCloud->SetSmartless(fSmartless);
logicCloud->SetUserLimits(fStepLimits);
logicCloud->SetVisAttributes(G4VisAttributes(false));
new G4PVPlacement(nullptr,//no rotation
G4ThreeVector(),//at position
logicCloud,//its logical volume
"cloudPV",//its name
logicWorld, //its mothervolume
false, //no boolean operation
0,//copy number
checkOverlaps);//overlaps checking
G4LogicalVolume* logicDroplet =
new G4LogicalVolume(fDropletShape,//its solid
droplet_mat,//its material
"dropletLV");//its name
logicDroplet->SetUserLimits(fStepLimits);
new G4PVParameterised("droplets",//its name
logicDroplet,//droplet logical volume
logicCloud,//mother logical volume
kUndefined,//droplets placed along this axis
positions.size(),//number of droplets
cloudParam);//the parametrisation
}
// **********************************************************
//
// (For comparision/benchmarking) Simulate the cloud by smearing droplets out into a single solid (does not use FastAerosol)
//
// ***********************************************************
else if (fSmoothCloud)
{
G4cout << "\nSmooth geometry based on a cloud of n=" << fDropletNumDens*mm3 << "/mm3 and r=" << fDropletR/mm << "mm spheres.\n" << G4endl;
// build cloud by smearing the droplets uniformly across the cloud volume, for comparison/benchmarking purposes (does not use FastAerosol)
G4Material* cloud_mat = new G4Material("Cloud", (droplet_total_mass+cloud_air_mass)/cloud_volume, 2);
cloud_mat->AddMaterial(droplet_mat, droplet_total_mass/(cloud_air_mass+droplet_total_mass));
cloud_mat->AddMaterial(air_mat, cloud_air_mass/(cloud_air_mass+droplet_total_mass));
logicCloud = new G4LogicalVolume(fCloudShape, //its solid
cloud_mat, //its material
"cloudLV"); //its name
logicCloud->SetUserLimits(fStepLimits);
logicCloud->SetVisAttributes(G4VisAttributes(G4Colour(0.0,0.0,1.0,0.4)));
new G4PVPlacement(nullptr, //no rotation
G4ThreeVector(), //at position
logicCloud,//its logical volume
"cloudPV", //its name
logicWorld, //its mothervolume
false, //no boolean operation
0,//copy number
checkOverlaps); //overlaps checking
}
else
{
G4cout << "\nNo cloud.\n" << G4endl;
}
//
// Build detector
//
G4double detector_sizeXY = cloud_sizeXY;
G4double detector_sizeZ = 0.05*m;
G4Material* detector_mat = nist->FindOrBuildMaterial("G4_Al");
G4ThreeVector detector_pos = G4ThreeVector(0, 0, 0.5*1.05*cloud_sizeZ);
G4Box* soldDetector = new G4Box("detectorSV", //its name
0.5*detector_sizeXY, //half x-span
0.5*detector_sizeXY, //half y-span
0.5*detector_sizeZ); //half z-span
G4LogicalVolume* logicDetector =
new G4LogicalVolume(soldDetector, //its solid
detector_mat, //its material
"detectorLV"); //its name
detector_mat, //its material
"detectorLV"); //its name
logicDetector->SetUserLimits(fStepLimits);
logicDetector->SetUserLimits(fStepLimits);
new G4PVPlacement(0, //no rotation
detector_pos, //at position
logicDetector, //its logical volume
"detectorPV", //its name
logicWorld, //its mothervolume
false, //no boolean operation
0, //copy number
checkOverlaps); //overlaps checking
new G4PVPlacement(nullptr,//no rotation
detector_pos, //at position
logicDetector, //its logical volume
"detectorPV", //its name
logicWorld, //its mothervolume
false, //no boolean operation
0, //copy number
checkOverlaps); //overlaps checking
//
// Scoring Volume
//
fScoringVolume = logicDetector;
//
// Scoring Volume
//
fScoringVolume = logicDetector;
return physWorld;
return physWorld;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
examples/advanced/fastAerosol/src/FAEventAction.cc
+4 -10
View File
@@ -23,7 +23,6 @@
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
// (copied from B1EventAction)
#include "FAEventAction.hh"
@@ -32,21 +31,16 @@
#include "G4RunManager.hh"
EventAction::EventAction(RunAction* runAction)
: G4UserEventAction(),
fRunAction(runAction),
fEdep(0.)
{}
EventAction::~EventAction()
: G4UserEventAction(), fRunAction(runAction), fEdep(0.)
{}
void EventAction::BeginOfEventAction(const G4Event*)
{
fEdep = 0.;
fEdep = 0.;
}
void EventAction::EndOfEventAction(const G4Event*)
{
// accumulate statistics in run action
fRunAction->AddEdep(fEdep);
// accumulate statistics in run action
fRunAction->AddEdep(fEdep);
}
examples/advanced/fastAerosol/src/FAPrimaryGeneratorAction.cc
+39 -42
View File
@@ -23,7 +23,6 @@
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
// (adapted from B1PrimaryGeneratorAction)
// Author: A.Knaian (ara@nklabs.com), N.MacFadden (natemacfadden@gmail.com)
@@ -39,61 +38,59 @@
#include "Randomize.hh"
PrimaryGeneratorAction::PrimaryGeneratorAction()
: G4VUserPrimaryGeneratorAction(),
fParticleGun(0),
fWorldBox(0)
: G4VUserPrimaryGeneratorAction(), fParticleGun(nullptr), fWorldBox(nullptr)
{
G4int n_particle = 1;
fParticleGun = new G4ParticleGun(n_particle);
G4int n_particle = 1;
fParticleGun = new G4ParticleGun(n_particle);
// default particle kinematic
G4ParticleTable* particleTable = G4ParticleTable::GetParticleTable();
G4String particleName;
G4ParticleDefinition* particle
// default particle kinematic
G4ParticleTable* particleTable = G4ParticleTable::GetParticleTable();
G4String particleName;
G4ParticleDefinition* particle
= particleTable->FindParticle(particleName="proton");
fParticleGun->SetParticleDefinition(particle);
fParticleGun->SetParticleMomentumDirection(G4ThreeVector(0.,0.,1.));
fParticleGun->SetParticleEnergy(50.*MeV);
fParticleGun->SetParticleDefinition(particle);
fParticleGun->SetParticleMomentumDirection(G4ThreeVector(0.,0.,1.));
fParticleGun->SetParticleEnergy(50.*MeV);
}
PrimaryGeneratorAction::~PrimaryGeneratorAction()
{
delete fParticleGun;
delete fParticleGun;
}
void PrimaryGeneratorAction::GeneratePrimaries(G4Event* anEvent)
{
G4double worldSizeXY = 0;
G4double worldSizeZ = 0;
G4double worldSizeXY = 0;
G4double worldSizeZ = 0;
if (!fWorldBox)
{
G4LogicalVolume* worldLV
= G4LogicalVolumeStore::GetInstance()->GetVolume("World");
if ( worldLV ) fWorldBox = dynamic_cast<G4Box*>(worldLV->GetSolid());
}
if ( fWorldBox ) {
worldSizeXY = fWorldBox->GetXHalfLength()*2.;
worldSizeZ = fWorldBox->GetZHalfLength()*2.;
}
else {
G4ExceptionDescription msg;
msg << "World volume of box shape not found.\n";
msg << "Perhaps you have changed geometry.\n";
msg << "The gun will be place at the center.";
G4Exception("PrimaryGeneratorAction::GeneratePrimaries()",
if (!fWorldBox)
{
G4LogicalVolume* worldLV
= G4LogicalVolumeStore::GetInstance()->GetVolume("World");
if ( worldLV ) fWorldBox = dynamic_cast<G4Box*>(worldLV->GetSolid());
}
if ( fWorldBox )
{
worldSizeXY = fWorldBox->GetXHalfLength()*2.;
worldSizeZ = fWorldBox->GetZHalfLength()*2.;
}
else
{
G4ExceptionDescription msg;
msg << "World volume of box shape not found.\n";
msg << "Perhaps you have changed geometry.\n";
msg << "The gun will be place at the center.";
G4Exception("PrimaryGeneratorAction::GeneratePrimaries()",
"MyCode0002",JustWarning,msg);
}
}
// shoot on XY disk centered on Z-axis behind the cloud
G4double sigma = worldSizeXY/10.0; // spread in x and y
G4double x0 = G4RandGauss::shoot(0,sigma);
G4double y0 = G4RandGauss::shoot(0,sigma);
G4double z0 = 0.95 * (-0.5) * worldSizeZ;
// shoot on XY disk centered on Z-axis behind the cloud
G4double sigma = worldSizeXY/10.0; // spread in x and y
G4double x0 = G4RandGauss::shoot(0,sigma);
G4double y0 = G4RandGauss::shoot(0,sigma);
G4double z0 = 0.95 * (-0.5) * worldSizeZ;
fParticleGun->SetParticlePosition(G4ThreeVector(x0,y0,z0));
fParticleGun->GeneratePrimaryVertex(anEvent);
fParticleGun->SetParticlePosition(G4ThreeVector(x0,y0,z0));
fParticleGun->GeneratePrimaryVertex(anEvent);
}
examples/advanced/fastAerosol/src/FARunAction.cc
+7 -11
View File
@@ -61,18 +61,14 @@ RunAction::RunAction()
accumulableManager->RegisterAccumulable(fEdep2);
}
RunAction::~RunAction()
{}
void RunAction::BeginOfRunAction(const G4Run*)
{
// inform the runManager to save random number seed
G4RunManager::GetRunManager()->SetRandomNumberStore(false);
// reset accumulables to their initial values
G4AccumulableManager* accumulableManager = G4AccumulableManager::Instance();
accumulableManager->Reset();
// inform the runManager to save random number seed
G4RunManager::GetRunManager()->SetRandomNumberStore(false);
// reset accumulables to their initial values
G4AccumulableManager* accumulableManager = G4AccumulableManager::Instance();
accumulableManager->Reset();
}
void RunAction::EndOfRunAction(const G4Run* run)
@@ -92,7 +88,7 @@ void RunAction::EndOfRunAction(const G4Run* run)
G4double rms = edep2 - edep*edep/nofEvents;
if (rms > 0.) rms = std::sqrt(rms); else rms = 0.;
const DetectorConstruction* detectorConstruction
const auto* detectorConstruction
= static_cast<const DetectorConstruction*>
(G4RunManager::GetRunManager()->GetUserDetectorConstruction());
G4double mass = detectorConstruction->GetScoringVolume()->GetMass();
@@ -102,7 +98,7 @@ void RunAction::EndOfRunAction(const G4Run* run)
// Run conditions
// note: There is no primary generator action object for "master"
// run manager for multi-threaded mode.
const PrimaryGeneratorAction* generatorAction
const auto* generatorAction
= static_cast<const PrimaryGeneratorAction*>
(G4RunManager::GetRunManager()->GetUserPrimaryGeneratorAction());
G4String runCondition;
examples/advanced/fastAerosol/src/FASteppingAction.cc
+2 -5
View File
@@ -38,16 +38,13 @@
SteppingAction::SteppingAction(EventAction* eventAction)
: G4UserSteppingAction(),
fEventAction(eventAction),
fScoringVolume(0)
{}
SteppingAction::~SteppingAction()
fScoringVolume(nullptr)
{}
void SteppingAction::UserSteppingAction(const G4Step* step)
{
if (!fScoringVolume) {
const DetectorConstruction* detectorConstruction
const auto* detectorConstruction
= static_cast<const DetectorConstruction*>
(G4RunManager::GetRunManager()->GetUserDetectorConstruction());
fScoringVolume = detectorConstruction->GetScoringVolume();
examples/advanced/fastAerosol/src/FastAerosol.cc
+617 -644
View File
File diff suppressed because it is too large Load Diff
examples/advanced/fastAerosol/src/FastAerosolSolid.cc
+5 -14
View File
@@ -49,7 +49,7 @@
namespace
{
G4Mutex polyhedronMutex = G4MUTEX_INITIALIZER;
G4Mutex polyhedronMutex = G4MUTEX_INITIALIZER;
}
@@ -57,11 +57,9 @@ namespace
//
// Constructor
//
FastAerosolSolid::FastAerosolSolid(const G4String& pName,
FastAerosol* pCloud,
G4VSolid* pDroplet,
FastAerosolSolid::FastAerosolSolid(const G4String& pName, FastAerosol* pCloud, G4VSolid* pDroplet,
std::function<G4RotationMatrix (G4ThreeVector)> pRotation)
: G4VSolid(pName), fCloud(pCloud), fDroplet(pDroplet), fRotation(pRotation), fRebuildPolyhedron(false), fpPolyhedron(0)
: G4VSolid(pName), fCloud(pCloud), fDroplet(pDroplet), fRotation(pRotation), fRebuildPolyhedron(false), fpPolyhedron(nullptr)
{
// Get cloud size from fCloud
G4ThreeVector cloudPMin, cloudPMax;
@@ -105,17 +103,10 @@ FastAerosolSolid::FastAerosolSolid( __void__& a )
fCubicVolume(0.), fSurfaceArea(0.),
farFromCloudDist(0.),
fRotation([](G4ThreeVector) {return G4RotationMatrix();}),
fRebuildPolyhedron(false), fpPolyhedron(0)
fRebuildPolyhedron(false), fpPolyhedron(nullptr)
{
}
///////////////////////////////////////////////////////////////////////////////
//
// Destructor
//
FastAerosolSolid::~FastAerosolSolid() {
}
///////////////////////////////////////////////////////////////////////////////
//
// Copy constructor
@@ -453,4 +444,4 @@ G4Polyhedron* FastAerosolSolid::GetPolyhedron () const
l.unlock();
}
return fpPolyhedron;
}
}
examples/advanced/gammaknife/gammaknife.out
+406 -404
View File
File diff suppressed because it is too large Load Diff
examples/advanced/gammaray_telescope/gammaraytel.out
+15998 -14971
View File
File diff suppressed because it is too large Load Diff
examples/advanced/gorad/gorad.out
+9 -9
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -222,19 +222,19 @@ Index : 3 used in the geometry : Yes
Run terminated.
Run Summary
Number of events processed : 100000
User=156.380000s Real=157.658563s Sys=0.010000s
User=126.920000s Real=127.924804s Sys=0.000000s
/control/doifBatch /score/dumpAllQuantitiesToFile Probes Probes.csv
/score/dumpAllQuantitiesToFile Probes Probes.csv
# Mesh or volume name: Probes -- # Primitive scorer name: dose
bin 0,0,0 : statistical error 38.3446(%)
to reduce the statistical error below 10%, increase number of events approximately 14.7031 times.
bin 0,0,0 : statistical error 24.7746(%)
to reduce the statistical error below 10%, increase number of events approximately 6.13782 times.
# Mesh or volume name: Probes -- # Primitive scorer name: protonFlux
bin 0,0,0 : statistical error 30.7962(%)
to reduce the statistical error below 10%, increase number of events approximately 9.48408 times.
bin 0,0,0 : statistical error 21.2599(%)
to reduce the statistical error below 10%, increase number of events approximately 4.51983 times.
# Mesh or volume name: Probes -- # Primitive scorer name: volFlx
bin 0,0,0 : statistical error 27.6707(%)
to reduce the statistical error below 10%, increase number of events approximately 7.65669 times.
bin 0,0,0 : statistical error 19.3005(%)
to reduce the statistical error below 10%, increase number of events approximately 3.72508 times.
================== Deleting memory pools ===================
Number of memory pools allocated: 12 of which, static: 0
Dynamic pools deleted: 12 / Total memory freed: 1.5 MB
Dynamic pools deleted: 12 / Total memory freed: 1.2 MB
============================================================
examples/advanced/hadrontherapy/hadrontherapy.out
+16 -14
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -46,7 +46,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -269,7 +271,7 @@ ePairProd: for e- XStype:1 SubType=4
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -309,7 +311,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -341,7 +343,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -410,7 +412,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -442,7 +444,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -474,7 +476,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -506,7 +508,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -538,7 +540,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -570,7 +572,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -602,7 +604,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -688,12 +690,12 @@ Run 0 starts ...
Run terminated.
Run Summary
Number of events processed : 500
User=5.220000s Real=5.314105s Sys=0.050000s
User=4.800000s Real=4.979722s Sys=0.050000s
Graphics systems deleted.
Visualization Manager deleting...
The simulation took: 8.36214 s to run (real time)
The simulation took: 8.03673 s to run (real time)
Dose is being written to Dose.out
i j k Dose(Gy)================== Deleting memory pools ===================
Number of memory pools allocated: 14 of which, static: 0
Dynamic pools deleted: 14 / Total memory freed: 0.46 MB
Dynamic pools deleted: 14 / Total memory freed: 0.57 MB
============================================================
examples/advanced/human_phantom/human_phantom.out
+13 -11
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -43,7 +43,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -538,7 +540,7 @@ ePairProd: for e- XStype:1 SubType=4
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -578,7 +580,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -611,7 +613,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -681,7 +683,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -714,7 +716,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -747,7 +749,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -780,7 +782,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -813,7 +815,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -846,7 +848,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -879,7 +881,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
examples/advanced/iort_therapy/iort_therapy.out
+4 -2
View File
@@ -10,7 +10,7 @@
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -42,7 +42,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -590,7 +592,7 @@ Run 0 starts ...
Run terminated.
Run Summary
Number of events processed : 2000
User=9.460000s Real=9.814651s Sys=0.260000s
User=9.450000s Real=10.013765s Sys=0.200000s
/score/dumpQuantityToFile boxMesh_1 dose dose.out
Graphics systems deleted.
Visualization Manager deleting...
examples/advanced/lAr_calorimeter/lAr_calorimeter.out
+275 -265
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -50,7 +50,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -214,7 +216,7 @@ eBrem: for e- XStype:4 SubType=3
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -246,7 +248,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -278,7 +280,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -291,7 +293,6 @@ ionIoni: for GenericIon XStype:3 SubType=2
dE/dx and range tables from 100 eV to 100 TeV in 84 bins
Lambda tables from threshold to 100 TeV, 7 bins/decade, spline: 1
StepFunction=(0.2, 0.1 mm), integ: 3, fluct: 1, linLossLim= 0.02
Stopping Power data for 17 ion/material pairs
===== EM models for the G4Region DefaultRegionForTheWorld ======
BraggIon : Emin= 0 eV Emax= 2 MeV
BetheBloch : Emin= 2 MeV Emax= 100 TeV
@@ -337,7 +338,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -369,7 +370,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -401,7 +402,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -433,7 +434,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -465,7 +466,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -497,7 +498,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 7 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -529,7 +530,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -915,12 +916,21 @@ CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
================================================================
### G4LevelReader: broken transition 0 from level 24 to 24 for isotope Z= 89 A= 219 - use ground level
=======================================================================
====== Pre-compound/De-excitation Physics Parameters ========
====== Geant4 Native Pre-compound Model Parameters ========
=======================================================================
Type of pre-compound inverse x-section 3
Pre-compound model active 1
Pre-compound excitation low energy 100 keV
Pre-compound excitation high energy 30 MeV
Angular generator for pre-compound model 1
Use NeverGoBack option for pre-compound model 0
Use SoftCutOff option for pre-compound model 0
Use CEM transitions for pre-compound model 1
Use GNASH transitions for pre-compound model 0
Use HETC submodel for pre-compound model 0
=======================================================================
====== Nuclear De-excitation Module Parameters ========
=======================================================================
Type of de-excitation inverse x-section 3
Type of de-excitation factory Evaporation+GEM
Number of de-excitation channels 68
@@ -1050,13 +1060,13 @@ Start closing geometry.
G4GeometryManager::ReportVoxelStats -- Voxel Statistics
Total memory consumed for geometry optimisation: 395 kByte
Total CPU time elapsed for geometry optimisation: 0.32 seconds
Total CPU time elapsed for geometry optimisation: 0.26 seconds
Voxelisation: top CPU users:
Percent Total CPU System CPU Memory Volume
------- ---------- ---------- -------- ----------
50.00 0.16 0.00 152k EmModuleLogical
50.00 0.16 0.00 238k HadModuleLogical
50.00 0.13 0.00 152k EmModuleLogical
50.00 0.13 0.00 238k HadModuleLogical
0.00 0.00 0.00 4k Mother
0.00 0.00 0.00 0k CryostatLogical
0.00 0.00 0.00 0k LArgLogical
@@ -1067,8 +1077,8 @@ G4GeometryManager::ReportVoxelStats -- Voxel Statistics
Voxelisation: top memory users:
Percent Memory Heads Nodes Pointers Total CPU Volume
------- -------- ------ ------ -------- ---------- ----------
60.17 238k 1385 2370 3792 0.16 HadModuleLogical
38.50 152k 1129 1152 2426 0.16 EmModuleLogical
60.17 238k 1385 2370 3792 0.13 HadModuleLogical
38.50 152k 1129 1152 2426 0.13 EmModuleLogical
0.93 3k 8 42 146 0.00 Mother
0.12 0k 1 7 8 0.00 SolidWLogical
0.12 0k 1 7 8 0.00 CuPlateLogical
@@ -1086,352 +1096,352 @@ Read 2001 events from file data-tracks/tracks-20GeV.dat
---> Begin of event: 1
**** Primary : 1
Vertex : (5.55552,7.16569,32740)
Number of F1 Tiles with Positive energy : 59
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.71231 2.9493 3.44161
Visible Energy in Hole Counter (MeV)
0 32.0741
Visible Energy in Upstream Dead Materials
1372.65
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 61
N Secondaries 86
EmEdep is=17610.5 MeV
HadEdep is=13.7131 MeV
Edep in FCAL1 FCAl2 : 17610.5 13.7131
**** Primary : 2
Vertex : (-3.76032,10.9751,32740)
Number of F1 Tiles with Positive energy : 55
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.71231 2.98995 3.52679
1.52701 1.90627 1.52244
Visible Energy in Hole Counter (MeV)
0 59.2601
0 137.097
Visible Energy in Upstream Dead Materials
1744.46
1303.18
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 51
N Secondaries 86
EmEdep is=17318.5 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 17318.5 0
**** Primary : 2
Vertex : (-3.76032,10.9751,32740)
Number of F1 Tiles with Positive energy : 49
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.87162 1.92888 1.72147
Visible Energy in Hole Counter (MeV)
0 114.393
Visible Energy in Upstream Dead Materials
2341.52
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 95
N Secondaries 113
EmEdep is=16041 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 16041 0
N Tracks out of world 58
N Secondaries 128
EmEdep is=17359.5 MeV
HadEdep is=0.770403 MeV
Edep in FCAL1 FCAl2 : 17359.5 0.770403
**** Primary : 3
Vertex : (13.1951,2.677,32740)
Number of F1 Tiles with Positive energy : 47
Number of F1 Tiles with Positive energy : 43
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.82234 1.64612 1.57421
1.85161 1.72217 1.54485
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
30.6329
7.78697
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 5
N Secondaries 287
EmEdep is=19697.6 MeV
HadEdep is=6.17895 MeV
Edep in FCAL1 FCAl2 : 19697.6 6.17895
N Tracks out of world 1
N Secondaries 209
EmEdep is=19900 MeV
HadEdep is=1.8511 MeV
Edep in FCAL1 FCAl2 : 19900 1.8511
**** Primary : 4
Vertex : (-8.66148,-8.80731,32740)
Number of F1 Tiles with Positive energy : 48
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
2.24023 1.5691 1.99345
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
6.62809
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 6
N Secondaries 298
EmEdep is=19854.6 MeV
HadEdep is=2.18466 MeV
Edep in FCAL1 FCAl2 : 19854.6 2.18466
**** Primary : 5
Vertex : (4.75859,7.01622,32740)
Number of F1 Tiles with Positive energy : 44
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.71216 1.57322 1.81781
1.74477 1.72368 1.57059
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
7.393
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 3
N Secondaries 193
EmEdep is=19779.2 MeV
HadEdep is=7.92109 MeV
Edep in FCAL1 FCAl2 : 19779.2 7.92109
**** Primary : 6
Vertex : (1.94335,14.9228,32740)
Number of F1 Tiles with Positive energy : 40
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
2.80826 1.83647 1.71984
Visible Energy in Hole Counter (MeV)
0 56.4375
Visible Energy in Upstream Dead Materials
591.166
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 24
N Secondaries 216
EmEdep is=18665.4 MeV
HadEdep is=2.03402 MeV
Edep in FCAL1 FCAl2 : 18665.4 2.03402
**** Primary : 7
Vertex : (-10.9878,-6.7949,32740)
Number of F1 Tiles with Positive energy : 42
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.5804 1.96594 1.88546
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
8.46772
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 5
N Secondaries 128
EmEdep is=19800.9 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 19800.9 0
**** Primary : 8
Vertex : (10.9757,-1.49585,32740)
Number of F1 Tiles with Positive energy : 44
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.57833 1.6999 1.67647
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
3.29726
6.52953
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 2
N Secondaries 298
EmEdep is=19874.7 MeV
N Secondaries 203
EmEdep is=19703 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 19874.7 0
**** Primary : 9
Vertex : (-27.7734,3.36444,32740)
Number of F1 Tiles with Positive energy : 59
Edep in FCAL1 FCAl2 : 19703 0
**** Primary : 5
Vertex : (4.75859,7.01622,32740)
Number of F1 Tiles with Positive energy : 54
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.93688 2.49148 1.68114
1.55138 4.94933 1.7509
Visible Energy in Hole Counter (MeV)
0 69.3636
0 73.5589
Visible Energy in Upstream Dead Materials
7002.76
821.666
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 191
N Secondaries 152
EmEdep is=10752.3 MeV
HadEdep is=0.652787 MeV
Edep in FCAL1 FCAl2 : 10752.3 0.652787
**** Primary : 10
Vertex : (-22.5474,4.1006,32740)
Number of F1 Tiles with Positive energy : 51
N Tracks out of world 34
N Secondaries 73
EmEdep is=17927.8 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 17927.8 0
**** Primary : 6
Vertex : (1.94335,14.9228,32740)
Number of F1 Tiles with Positive energy : 57
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.67064 2.37068 4.58452
1.54202 2.68524 1.85422
Visible Energy in Hole Counter (MeV)
0 144.546
Visible Energy in Upstream Dead Materials
1011.66
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 65
N Secondaries 133
EmEdep is=17463.2 MeV
HadEdep is=6.00078 MeV
Edep in FCAL1 FCAl2 : 17463.2 6.00078
**** Primary : 7
Vertex : (-10.9878,-6.7949,32740)
Number of F1 Tiles with Positive energy : 75
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.90567 3.40503 2.48706
Visible Energy in Hole Counter (MeV)
0 139.211
Visible Energy in Upstream Dead Materials
5765.37
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 184
N Secondaries 251
EmEdep is=11968 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 11968 0
**** Primary : 8
Vertex : (10.9757,-1.49585,32740)
Number of F1 Tiles with Positive energy : 47
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.66122 2.81189 3.22355
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
4.37874
3.07205
Visible Energy in Tail Catcher Scintillator
0.0548004 0 0 0 0 0 0
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0.00228468 0 0 0 0 0
N Tracks out of world 7
N Secondaries 268
EmEdep is=19709.1 MeV
HadEdep is=2.32481 MeV
Edep in FCAL1 FCAl2 : 19709.1 2.32481
0 0 0 0 0 0
N Tracks out of world 1
N Secondaries 294
EmEdep is=19819 MeV
HadEdep is=8.67455 MeV
Edep in FCAL1 FCAl2 : 19819 8.67455
**** Primary : 9
Vertex : (-27.7734,3.36444,32740)
Number of F1 Tiles with Positive energy : 67
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.52472 2.44428 1.84001
Visible Energy in Hole Counter (MeV)
0 129.115
Visible Energy in Upstream Dead Materials
8699.4
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 251
N Secondaries 320
EmEdep is=8992.89 MeV
HadEdep is=2.55865 MeV
Edep in FCAL1 FCAl2 : 8992.89 2.55865
**** Primary : 10
Vertex : (-22.5474,4.1006,32740)
Number of F1 Tiles with Positive energy : 42
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.56407 1.53001 1.82565
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
4.49519
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 0
N Secondaries 195
EmEdep is=19800.3 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 19800.3 0
---> Begin of event: 11
**** Primary : 11
Vertex : (-6.31939,21.5056,32740)
Number of F1 Tiles with Positive energy : 76
Number of F1 Tiles with Positive energy : 71
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.81065 1.66862 1.8954
1.54164 1.71126 1.59721
Visible Energy in Hole Counter (MeV)
0 96.6734
0 176.532
Visible Energy in Upstream Dead Materials
6898.98
6686.54
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 169
N Secondaries 72
EmEdep is=10591.5 MeV
HadEdep is=1.08337 MeV
Edep in FCAL1 FCAl2 : 10591.5 1.08337
0.118848 0 0 0 0 0
N Tracks out of world 242
N Secondaries 113
EmEdep is=10533.2 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 10533.2 0
**** Primary : 12
Vertex : (17.1015,6.30557,32740)
Number of F1 Tiles with Positive energy : 53
Number of F1 Tiles with Positive energy : 45
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.63468 1.58395 1.68024
1.48206 1.52776 1.68422
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
7.32858
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 5
N Secondaries 210
EmEdep is=19821.1 MeV
HadEdep is=0.715842 MeV
Edep in FCAL1 FCAl2 : 19821.1 0.715842
**** Primary : 13
Vertex : (-24.9484,11.8659,32740)
Number of F1 Tiles with Positive energy : 6
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.57473 2.597 2.02058
Visible Energy in Hole Counter (MeV)
0 41.2781
Visible Energy in Upstream Dead Materials
19234.2
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 156
N Secondaries 270
EmEdep is=154.305 MeV
HadEdep is=0.74704 MeV
Edep in FCAL1 FCAl2 : 154.305 0.74704
**** Primary : 14
Vertex : (-0.133696,18.3151,32740)
Number of F1 Tiles with Positive energy : 46
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
2.28961 3.49663 2.25446
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
21.9865
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 3
N Secondaries 202
EmEdep is=19696.6 MeV
HadEdep is=15.3392 MeV
Edep in FCAL1 FCAl2 : 19696.6 15.3392
**** Primary : 15
Vertex : (17.3196,17.6617,32740)
Number of F1 Tiles with Positive energy : 48
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
2.78029 2.20745 1.84498
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
4.84631
3.81244
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 2
N Secondaries 196
EmEdep is=19832.6 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 19832.6 0
N Secondaries 159
EmEdep is=19848.9 MeV
HadEdep is=0.219479 MeV
Edep in FCAL1 FCAl2 : 19848.9 0.219479
**** Primary : 13
Vertex : (-24.9484,11.8659,32740)
Number of F1 Tiles with Positive energy : 58
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
2.44751 1.90267 1.66902
Visible Energy in Hole Counter (MeV)
0 178.901
Visible Energy in Upstream Dead Materials
8717.33
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 212
N Secondaries 76
EmEdep is=9371.29 MeV
HadEdep is=1.80074 MeV
Edep in FCAL1 FCAl2 : 9371.29 1.80074
**** Primary : 14
Vertex : (-0.133696,18.3151,32740)
Number of F1 Tiles with Positive energy : 44
Number of F2 tiles with Positive energy : 1
Visisble Energy in S1 , S2 , S3 in (MeV)
2.66622 1.59886 1.54882
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
11.1094
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 3
N Secondaries 170
EmEdep is=19724.8 MeV
HadEdep is=12.2943 MeV
Edep in FCAL1 FCAl2 : 19724.8 12.2943
**** Primary : 15
Vertex : (17.3196,17.6617,32740)
Number of F1 Tiles with Positive energy : 47
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.55148 1.77448 1.57078
Visible Energy in Hole Counter (MeV)
0 0
Visible Energy in Upstream Dead Materials
10.0732
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 7
N Secondaries 220
EmEdep is=19809.2 MeV
HadEdep is=0.799317 MeV
Edep in FCAL1 FCAl2 : 19809.2 0.799317
**** Primary : 16
Vertex : (-20.8489,10.8988,32740)
Number of F1 Tiles with Positive energy : 49
Number of F1 Tiles with Positive energy : 70
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.90825 1.84779 1.53285
1.49907 1.65655 1.60126
Visible Energy in Hole Counter (MeV)
0 42.9954
0 104.195
Visible Energy in Upstream Dead Materials
765.322
4855.68
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 37
N Secondaries 165
EmEdep is=18342.9 MeV
HadEdep is=4.41746 MeV
Edep in FCAL1 FCAl2 : 18342.9 4.41746
N Tracks out of world 149
N Secondaries 224
EmEdep is=12949.8 MeV
HadEdep is=0.927821 MeV
Edep in FCAL1 FCAl2 : 12949.8 0.927821
**** Primary : 17
Vertex : (-9.96316,-9.33478,32740)
Number of F1 Tiles with Positive energy : 40
Number of F1 Tiles with Positive energy : 37
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.64259 1.91545 1.68632
1.53181 1.74553 1.50282
Visible Energy in Hole Counter (MeV)
0 13.568
0 0
Visible Energy in Upstream Dead Materials
124.717
13.3302
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 5
N Secondaries 222
EmEdep is=19688.5 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 19688.5 0
N Tracks out of world 2
N Secondaries 135
EmEdep is=19856.1 MeV
HadEdep is=4.95649 MeV
Edep in FCAL1 FCAl2 : 19856.1 4.95649
**** Primary : 18
Vertex : (-9.96316,-9.33478,32740)
Number of F1 Tiles with Positive energy : 63
Number of F1 Tiles with Positive energy : 45
Number of F2 tiles with Positive energy : 0
Visisble Energy in S1 , S2 , S3 in (MeV)
1.58896 2.0655 2.17158
2.45427 1.57577 2.00021
Visible Energy in Hole Counter (MeV)
0 122.447
0 0.546005
Visible Energy in Upstream Dead Materials
3752.91
5.05385
Visible Energy in Tail Catcher Scintillator
0 0 0 0 0 0 0
Visible Energy in Tail Catcher Absorber
0 0 0 0 0 0
N Tracks out of world 140
N Secondaries 234
EmEdep is=14452.3 MeV
HadEdep is=0 MeV
Edep in FCAL1 FCAl2 : 14452.3 0
N Tracks out of world 8
N Secondaries 102
EmEdep is=19752.8 MeV
HadEdep is=38.8907 MeV
Edep in FCAL1 FCAl2 : 19752.8 38.8907
Run terminated.
Run Summary
Number of events processed : 18
User=7.310000s Real=7.367683s Sys=0.010000s
User=6.520000s Real=6.567476s Sys=0.010000s
There are 4 h1 histograms
0 with 0 entries: Number of Out Of World
1 with 0 entries: Number of Secondaries
@@ -1454,25 +1464,25 @@ G4SDManager deleted.
EventManager deleted.
Units table cleared.
TransportationManager deleted.
Total navigation history collections cleaned: 44
Total navigation history collections cleaned: 42
G4RNGHelper object is deleted.
================== Deleting memory pools ===================
Pool ID '20G4NavigationLevelRep', size : 0.0615 MB
Pool ID '20G4NavigationLevelRep', size : 0.0606 MB
Pool ID '24G4ReferenceCountedHandleIvE', size : 0.000961 MB
Pool ID '17G4DynamicParticle', size : 0.103 MB
Pool ID '17G4DynamicParticle', size : 0.0856 MB
Pool ID '16G4SmartVoxelNode', size : 0.112 MB
Pool ID '17G4SmartVoxelProxy', size : 0.0942 MB
Pool ID '7G4Event', size : 0.000961 MB
Pool ID '15G4PrimaryVertex', size : 0.000961 MB
Pool ID '17G4PrimaryParticle', size : 0.000961 MB
Pool ID '15G4HCofThisEvent', size : 0.000961 MB
Pool ID '7G4Track', size : 0.206 MB
Pool ID '18G4TouchableHistory', size : 0.00577 MB
Pool ID '7G4Track', size : 0.17 MB
Pool ID '18G4TouchableHistory', size : 0.00481 MB
Pool ID '15G4CountedObjectIvE', size : 0.000961 MB
Pool ID '10G4Fragment', size : 0.00192 MB
Pool ID '17G4ReactionProduct', size : 0.00192 MB
Number of memory pools allocated: 14 of which, static: 0
Dynamic pools deleted: 14 / Total memory freed: 0.59 MB
Dynamic pools deleted: 14 / Total memory freed: 0.54 MB
============================================================
G4Allocator objects are deleted.
UImanager deleted.
examples/advanced/medical_linac/medical_linac.out
+20 -20
View File
@@ -10,7 +10,7 @@
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -393,7 +393,7 @@ ePairProd: for e- XStype:1 SubType=4
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -432,7 +432,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -464,7 +464,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -533,7 +533,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -565,7 +565,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -597,7 +597,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -629,7 +629,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -661,7 +661,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -693,7 +693,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -725,7 +725,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -973,10 +973,10 @@ Launched 50000 random primary particles
Run terminated.
Run Summary
Number of events processed : 50000
User=17.640000s Real=17.789949s Sys=0.000000s
User=14.340000s Real=14.424118s Sys=0.000000s
PrimitiveScorer RUN PhantomSD,TotalDose
Number of entries 144
loop elapsed time [s] : 17.68
loop elapsed time [s] : 14.39
Region <DefaultRegionForTheWorld> -- -- appears in <worldPV> world volume
@@ -1200,10 +1200,10 @@ Launched 50000 random primary particles
Run terminated.
Run Summary
Number of events processed : 50000
User=17.110000s Real=17.247989s Sys=0.000000s
User=14.440000s Real=14.522564s Sys=0.000000s
PrimitiveScorer RUN PhantomSD,TotalDose
Number of entries 181
loop elapsed time [s] : 17.14
loop elapsed time [s] : 14.48
################ END NEW GEOMETRY ########################
/run/geometryModified
@@ -1497,10 +1497,10 @@ Launched 50000 random primary particles
Run terminated.
Run Summary
Number of events processed : 50000
User=17.440000s Real=17.590274s Sys=0.000000s
User=14.330000s Real=14.403898s Sys=0.000000s
PrimitiveScorer RUN PhantomSD,TotalDose
Number of entries 166
loop elapsed time [s] : 17.48
loop elapsed time [s] : 14.37
Region <DefaultRegionForTheWorld> -- -- appears in <worldPV> world volume
@@ -1724,13 +1724,13 @@ Launched 50000 random primary particles
Run terminated.
Run Summary
Number of events processed : 50000
User=17.310000s Real=17.454879s Sys=0.010000s
User=14.370000s Real=14.445436s Sys=0.000000s
PrimitiveScorer RUN PhantomSD,TotalDose
Number of entries 154
loop elapsed time [s] : 17.35
loop elapsed time [s] : 14.41
################ END NEW GEOMETRY ########################
loop elapsed time [s] : 73.15
loop elapsed time [s] : 60.76
G4 kernel has come to Quit state.
UserDetectorConstruction deleted.
examples/advanced/microbeam/microbeam.out
+12 -12
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -468,7 +468,7 @@ ePairProd: for e- XStype:1 SubType=4
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
UserMaxStep: SubType= 401 Step limit(mm)= 1
@@ -508,7 +508,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -540,7 +540,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -609,7 +609,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -641,7 +641,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -673,7 +673,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -705,7 +705,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -737,7 +737,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -769,7 +769,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -801,10 +801,10 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
##### Create analysis manager 0xf4f0a0
##### Create analysis manager 0x171ee70
Using analysis manager
All Ntuples have been created
-> Event # 1 generated
examples/advanced/microelectronics/microelectronics.out
+12 -10
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -47,7 +47,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -263,7 +265,6 @@ ionIoni: for GenericIon XStype:3 SubType=2
dE/dx and range tables from 100 meV to 10 TeV in 280 bins
Lambda tables from threshold to 10 TeV, 20 bins/decade, spline: 1
StepFunction=(0.2, 0.1 mm), integ: 3, fluct: 1, linLossLim= 0.02
Stopping Power data for 17 ion/material pairs
===== EM models for the G4Region DefaultRegionForTheWorld ======
BraggIon : Emin= 0 eV Emax= 2 MeV deltaVI
BetheBloch : Emin= 2 MeV Emax= 10 TeV deltaVI
@@ -338,7 +339,7 @@ G4GeometryManager::ReportVoxelStats -- Voxel Statistics
G4VisManager: Using G4TrajectoryDrawByCharge as fallback trajectory model.
See commands in /vis/modeling/trajectories/ for other options.
### Run 0 starts.
##### Create analysis manager 0x22f6c30
##### Create analysis manager 0x2817030
Using analysis manager
... set ntuple merging row mode : row-wise - done
... create file : microelectronics.root - done
@@ -350,24 +351,25 @@ Si
Reading TCS file
Elastic Total Cross file : Elastic/elsepa_elastic_cross_e_Si
loaddata : Elastic/elsepa_elastic_cross_e_Si
Elastic Cumulated Diff Cross : /cvmfs/geant4.cern.ch/share/data/G4EMLOW8.2/microelec/Elastic/elsepa_elastic_cumulated_diffcross_e_Si.dat
Elastic Cumulated Diff Cross : /cvmfs/geant4.cern.ch/share/data/G4EMLOW8.4/microelec/Elastic/elsepa_elastic_cumulated_diffcross_e_Si.dat
MicroElasticModel, Material 2 / 2 : G4_Si
Si
Reading TCS file
Elastic Total Cross file : Elastic/elsepa_elastic_cross_e_Si
loaddata : Elastic/elsepa_elastic_cross_e_Si
Elastic Cumulated Diff Cross : /cvmfs/geant4.cern.ch/share/data/G4EMLOW8.2/microelec/Elastic/elsepa_elastic_cumulated_diffcross_e_Si.dat
Elastic Cumulated Diff Cross : /cvmfs/geant4.cern.ch/share/data/G4EMLOW8.4/microelec/Elastic/elsepa_elastic_cumulated_diffcross_e_Si.dat
Run terminated.
Run Summary
Number of events processed : 10
User=0.330000s Real=0.345914s Sys=0.010000s
User=0.330000s Real=0.373924s Sys=0.020000s
... write file : microelectronics.root - done
... close file : microelectronics.root - done
... clear all data - done
Number and type of particles created outside region "Target" :
N e- : 1
_______________________
Number and type of particles created in region "Target" :
N e- : 2432
N e- : 6212
Graphics systems deleted.
Visualization Manager deleting...
G4 kernel has come to Quit state.
@@ -391,12 +393,12 @@ Pool ID '24G4ReferenceCountedHandleIvE', size : 0.000961 MB
Pool ID '7G4Event', size : 0.000961 MB
Pool ID '15G4PrimaryVertex', size : 0.000961 MB
Pool ID '17G4PrimaryParticle', size : 0.000961 MB
Pool ID '17G4DynamicParticle', size : 0.0115 MB
Pool ID '7G4Track', size : 0.0221 MB
Pool ID '17G4DynamicParticle', size : 0.0221 MB
Pool ID '7G4Track', size : 0.0433 MB
Pool ID '18G4TouchableHistory', size : 0.000961 MB
Pool ID '15G4CountedObjectIvE', size : 0.000961 MB
Number of memory pools allocated: 9 of which, static: 0
Dynamic pools deleted: 9 / Total memory freed: 0.047 MB
Dynamic pools deleted: 9 / Total memory freed: 0.079 MB
============================================================
G4Allocator objects are deleted.
UImanager deleted.
examples/advanced/nanobeam/OM50.grid
Executable → Regular
View File
examples/advanced/nanobeam/nanobeam.out
+4 -3
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -43,6 +43,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
G2 (T/m) = 16.4947
G3 (T/m) = 9.86677
G4 (T/m) = -6.24449
G4ChordFinder: stepperDriverId: 2
PhysicsList::SetCuts:CutLength : 1 um
-------- WWWW ------- G4Exception-START -------- WWWW -------
@@ -98,6 +99,7 @@ G4Material WARNING: duplicate name of material Vacuum
G2 (T/m) = 16.4953
G3 (T/m) = 9.86726
G4 (T/m) = -6.2448
G4ChordFinder: stepperDriverId: 2
=======================================================================
====== Electromagnetic Physics Parameters ========
=======================================================================
@@ -264,7 +266,6 @@ ionIoni: for GenericIon XStype:3 SubType=2
dE/dx and range tables from 100 eV to 100 TeV in 84 bins
Lambda tables from threshold to 100 TeV, 7 bins/decade, spline: 1
StepFunction=(0.2, 0.1 mm), integ: 3, fluct: 1, linLossLim= 0.02
Stopping Power data for 17 ion/material pairs
===== EM models for the G4Region DefaultRegionForTheWorld ======
BraggIon : Emin= 0 eV Emax= 2 MeV
BetheBloch : Emin= 2 MeV Emax= 100 TeV
@@ -293,7 +294,7 @@ Index : 0 used in the geometry : Yes
==================================================================
##### Create analysis manager 0x1e7ab50
##### Create analysis manager 0x13c4a00
Using analysis manager
Ntuple-1 created
Ntuple-2 created
examples/advanced/purging_magnet/purging_magnet.out
+15 -12
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -43,7 +43,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -229,6 +231,7 @@ After reordering if neccesary
---> Dif values x,y,z (range): 10 22 36 cm in z
-----------------------------------------------------------
DeltaStep 0.01mm
G4ChordFinder: stepperDriverId: 2
PurgMagPhysicsList::SetCuts:CutLength : 1 um
-------- WWWW ------- G4Exception-START -------- WWWW -------
@@ -382,7 +385,7 @@ ePairProd: for e- XStype:1 SubType=4
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -422,7 +425,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -454,7 +457,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -523,7 +526,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -555,7 +558,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -587,7 +590,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -619,7 +622,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -651,7 +654,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -683,7 +686,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -715,7 +718,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -774,7 +777,7 @@ Total number of event = 100000
------- MixMaxRng engine status -------
Current state vector is:
mixmax state, file version 1.0
N=17 V[N]={178715393884003041, 1924215168640207574, 195555616801611567, 53107534660245820, 1825856043083475140, 1792951263768582503, 438669518415037562, 2246688480621702590, 2057578841139869913, 2169294347317174467, 1861954794404699023, 55325311607728307, 849425583492111153, 1865477072846557918, 2097575288325327119, 667094300280606690, 274384931326759230} counter= 13sumtot= 2107125416906148009
N=17 V[N]={77748014430414613, 1916023684659400533, 1170895291302529645, 1308717968961542533, 617576989286624977, 4159304169773412, 1773860259953165952, 1170460085642752549, 1346723549001032558, 2164775407857314692, 1400227920416410176, 1742052209028641158, 51329690927869269, 1772437326104352635, 406661536190202989, 1018565785029837114, 1261036022485472146} counter= 10sumtot= 756506971737785343
---------------------------------------
Graphics systems deleted.
Visualization Manager deleting...
examples/advanced/radioprotection/radioprotection.out
+24 -12
View File
@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-patch-02 (15-June-2023)
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -43,7 +43,9 @@ Registered graphics systems are:
Qt3D (Qt3D)
TOOLSSG_X11_GLES (TSG_X11_GLES, TSGX11, TSG_XT_GLES_FALLBACK)
TOOLSSG_XT_GLES (TSG_XT_GLES, TSGXt, TSG_QT_GLES_FALLBACK)
TOOLSSG_XT_ZB (TSG_XT_ZB, TSGXtZB)
TOOLSSG_QT_GLES (TSG_QT_GLES, TSGQt, TSG)
TOOLSSG_QT_ZB (TSG_QT_ZB, TSGQtZB)
Registering model factories...
@@ -241,7 +243,7 @@ ePairProd: for e- XStype:1 SubType=4
CoulombScat: for e- XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -280,7 +282,7 @@ annihil: for e+ XStype:2 SubType=5 BuildTable=0
CoulombScat: for e+ XStype:1 SubType=1 BuildTable=1
Lambda table from 100 MeV to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 100 MeV Emax= 100 TeV
@@ -314,7 +316,7 @@ hPairProd: for proton XStype:1 SubType=4
CoulombScat: for proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -404,7 +406,7 @@ hPairProd: for anti_proton XStype:1 SubType=4
CoulombScat: for anti_proton XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -438,7 +440,7 @@ hPairProd: for kaon+ XStype:1 SubType=4
CoulombScat: for kaon+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -472,7 +474,7 @@ hPairProd: for kaon- XStype:1 SubType=4
CoulombScat: for kaon- XStype:1 SubType=1 BuildTable=1
Used Lambda table of kaon+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -506,7 +508,7 @@ muPairProd: for mu+ XStype:1 SubType=4
CoulombScat: for mu+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -540,7 +542,7 @@ muPairProd: for mu- XStype:1 SubType=4
CoulombScat: for mu- XStype:1 SubType=1 BuildTable=1
Used Lambda table of mu+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
NeutronHP: /Capture file for Z = 6, A = 12 is not found and NeutronHP will use /cvmfs/geant4.cern.ch/share/data/G4NDL4.7/Capture/CrossSection/6_nat_Carbon
@@ -562,6 +564,7 @@ NeutronHP: /Elastic file for Z = 6, A = 12 is not found and NeutronHP will use /
ProduceFissionFragments ? 0
UseWendtFissionModel ? 0
UseNRESP71Model ? 0
UseDBRC ? 0
=======================================================
@@@ G4ParticleHPInelastic instantiated for particle neutron data directory variable is G4NEUTRONHPDATA pointing to /cvmfs/geant4.cern.ch/share/data/G4NDL4.7/Inelastic
@@ -598,7 +601,7 @@ hPairProd: for pi+ XStype:1 SubType=4
CoulombScat: for pi+ XStype:1 SubType=1 BuildTable=1
Lambda table from threshold to 100 TeV, 20 bins/decade, spline: 0
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
@@ -632,7 +635,7 @@ hPairProd: for pi- XStype:1 SubType=4
CoulombScat: for pi- XStype:1 SubType=1 BuildTable=1
Used Lambda table of pi+
ThetaMin(p) < Theta(degree) < 180 pLimit(GeV^1)= 0.139531
ThetaMin(p) < Theta(degree) < 180, pLimit(GeV^1)= 0.139531
===== EM models for the G4Region DefaultRegionForTheWorld ======
eCoulombScattering : Emin= 0 eV Emax= 100 TeV
======================================================================
@@ -967,12 +970,21 @@ Threshold for very long decay time at rest 3.171e+10 y
================================================================
=======================================================================
====== Pre-compound/De-excitation Physics Parameters ========
====== Geant4 Native Pre-compound Model Parameters ========
=======================================================================
Type of pre-compound inverse x-section 3
Pre-compound model active 1
Pre-compound excitation low energy 100 keV
Pre-compound excitation high energy 30 MeV
Angular generator for pre-compound model 1
Use NeverGoBack option for pre-compound model 0
Use SoftCutOff option for pre-compound model 0
Use CEM transitions for pre-compound model 1
Use GNASH transitions for pre-compound model 0
Use HETC submodel for pre-compound model 0
=======================================================================
====== Nuclear De-excitation Module Parameters ========
=======================================================================
Type of de-excitation inverse x-section 3
Type of de-excitation factory Evaporation+GEM
Number of de-excitation channels 68
examples/advanced/stim_pixe_tomography/CMakeLists.txt
+64
View File
@@ -0,0 +1,64 @@
#----------------------------------------------------------------------------
# Setup the project
cmake_minimum_required(VERSION 3.16...3.21)
project(stim_pixe_tomography)
#----------------------------------------------------------------------------
# Find Geant4 package, activating all available UI and Vis drivers by default
# You can set WITH_GEANT4_UIVIS to OFF via the command line or ccmake/cmake-gui
# to build a batch mode only executable
#
option(WITH_GEANT4_UIVIS "Build example with Geant4 UI and Vis drivers" ON)
if (WITH_GEANT4_UIVIS)
find_package(Geant4 REQUIRED ui_all vis_all)
else ()
find_package(Geant4 REQUIRED)
endif ()
#----------------------------------------------------------------------------
# Setup Geant4 include directories and compile definitions
#
include(${Geant4_USE_FILE})
#----------------------------------------------------------------------------
# Locate sources and headers for this project
#
include_directories(${PROJECT_SOURCE_DIR}/include
${Geant4_INCLUDE_DIR})
file(GLOB sources ${PROJECT_SOURCE_DIR}/src/*.cc)
file(GLOB headers ${PROJECT_SOURCE_DIR}/include/*.hh)
#----------------------------------------------------------------------------
# Add the executable, and link it to the Geant4 libraries
#
add_executable(stim_pixe_tomography stim_pixe_tomography.cc ${sources} ${headers})
target_link_libraries(stim_pixe_tomography ${Geant4_LIBRARIES})
#----------------------------------------------------------------------------
# Copy all scripts to the build directory, i.e. the directory in which we
# build stim_pixe_tomography. This is so that we can run the executable directly because it
# relies on these scripts being in the current working directory.
#
set(stim_pixe_tomography_SCRIPTS
pixe3d.mac
pixe3d_stim.mac
pixe3d_initial.mac
GPSPointLoop.C
test.in
vis.mac
init_vis.mac
)
foreach (_script ${stim_pixe_tomography_SCRIPTS})
configure_file(
${PROJECT_SOURCE_DIR}/${_script}
${PROJECT_BINARY_DIR}/${_script}
COPYONLY
)
endforeach ()
#----------------------------------------------------------------------------
# Install the executable to 'bin' directory under CMAKE_INSTALL_PREFIX
#
install(TARGETS stim_pixe_tomography DESTINATION bin)
examples/advanced/stim_pixe_tomography/GPSPointLoop.C
+126
View File
@@ -0,0 +1,126 @@
//***********************************************************************************************************
// GPSPointLoop.C
// Root command file
// Type: root GPSPointLoop.C
//
// It generates a macro file to run the simulation.
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
// include <stdio.h>
// include <string.h>
// include <stdint.h>
// include <vector>
// include <math.h>
// using namespace std;
void GPSPointLoop()
{
gSystem->CopyFile("pixe3d_initial.mac", "pixe3d.mac", true);
FILE* pfile = fopen("pixe3d.mac", "a+");
// gSystem->CopyFile("pixe3d_initial.mac", "pixe3d_stim.mac", true);
// FILE* pfile = fopen("pixe3d_stim.mac", "a+");
//***********************************************
//***(begin)** Define scan parameters************
//***********************************************
//***********************************************
int NumberOfProjections = 10; // Define the number of Projections from zero to TotalAngleSpan
// (last value "TotalAngleSpan" is excluded)
int NumberOfSlices = 1; // Define the number of Slices
int NumberOfPixels = 20; // Define the number of Pixels for square YZ Scan
double TotalAngleSpan = 180; // scan angular range in degrees
double ScanSize = 40 * 1.8; // unit um, scan size for cube of 40 um
// double ScanSize = 42.48*1.8; // unit um, scan size for C.elegans
// double ScanSize = 500; // unit um, scan size for GDP
double ScanHeight = ScanSize; // Height of the scan, it depends on the need
// double ScanHeight = 201.127; //Height of the scan for STIM-T simulatio of C. elegans, for 128
// slices
int NbParticles = 1000000;
double energy = 1.5; // MeV
char typeParticle[10] = "proton";
double PixelWidth = 1. * ScanSize / NumberOfPixels; // Width of each pixel
double SliceHeight = 1. * ScanHeight / NumberOfSlices; // Height of each
// slice
double AngleStep =
1. * TotalAngleSpan / NumberOfProjections; // angular increment (in degrees)
// between two consecutive projections
//
// The beam position is at the center of each pixel
// Starting position of the beam = StartScan + 0.5 x PixelWidth
// The scan starts from the bottom left of the square
//
double StartScanXY = -0.5 * ScanSize;
double StartScanZ = -0.5 * ScanHeight;
// double StartScanZ = 0;
bool isInterrupted = false;
int P_interrupt = 0; // the start of projection index to resume a simulation
//***********************************************
//***(end)** Define scan parameters**************
//***********************************************
//************************************
//***(begin)** SCAN IMPLEMENTATION ***
//************************************
fprintf(pfile, "/tomography/run/scanParameters %d %d %d\n", NumberOfProjections, NumberOfSlices,
NumberOfPixels);
fprintf(pfile, "#\n");
if (isInterrupted) {
fprintf(pfile, "/tomography/run/resumeSimulation true\n");
fprintf(pfile, "/tomography/run/resumeProjectionIndex %d\n", P_interrupt);
fprintf(pfile, "#\n");
}
fprintf(pfile, "/run/initialize\n");
fprintf(pfile, "#\n");
fprintf(pfile, "/run/printProgress 500000\n");
fprintf(pfile, "#\n");
fprintf(pfile, "# Source definition : energy, type\n");
fprintf(pfile, "#\n");
fprintf(pfile, "/gps/energy %.2f MeV\n", energy);
fprintf(pfile, "/gps/particle %s\n", typeParticle);
fprintf(pfile, "#\n");
fprintf(pfile, "# SOURCE POSITION AND DIRECTION\n");
fprintf(pfile, "#\n");
for (int projectionIndex = 0; projectionIndex < NumberOfProjections;
++projectionIndex) // projections
{
if (isInterrupted) {
if (projectionIndex < P_interrupt) continue;
}
for (int sliceIndex = 0; sliceIndex < NumberOfSlices; ++sliceIndex) // slices
{
// if(sliceIndex<15) continue;
for (int pixelIndex = 0; pixelIndex < NumberOfPixels; ++pixelIndex) // pixels
{
double px = cos(projectionIndex * AngleStep * TMath::DegToRad()); // beam direction
double py = sin(projectionIndex * AngleStep * TMath::DegToRad());
double pz = 0.0;
double x =
StartScanXY * px - (StartScanXY + (pixelIndex + 0.5) * PixelWidth) * py; // beam position
double y = StartScanXY * py + (StartScanXY + (pixelIndex + 0.5) * PixelWidth) * px;
double z = StartScanZ + (sliceIndex + 0.5) * SliceHeight;
// z = 18.07; //if z is fixed
// z = z + 1.953125;
// z = z + 3.90625;
fprintf(pfile, "/gps/direction %f %f %f\n", px, py, pz);
// fprintf(pfile, "/gps/pos/centre %.6f %.6f %.6f um\n",x, y, z );
fprintf(pfile, "/gps/pos/centre %f %f %f um\n", x, y, z);
fprintf(pfile, "/run/beamOn %d\n", NbParticles);
fprintf(pfile, "#\n");
}
}
}
fclose(pfile);
//************************************
//***(end)** SCAN IMPLEMENTATION ***
//************************************
}
examples/advanced/stim_pixe_tomography/History
+8
View File
@@ -0,0 +1,8 @@
# Example stim_pixe_tomography History
See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
which **must** added in reverse chronological order (newest at the top). It must **not**
be used as a substitute for writing good git commit messages!
## 2023-03-15 Z.Li (stim_pixe_tomography-V11-01-00)
- Added first version of stim_pixe_tomography example
examples/advanced/stim_pixe_tomography/README
+178
View File
@@ -0,0 +1,178 @@
stim_pixe_tomography advanced example
The stim_pixe_tomography advanced example is developed to simulate three dimensional STIM or
PIXE tomography experiments. The simulation results are written in a binary file and can be easily accessed using the
provided scripts.
Publications:
[1] Li Z, Incerti S, Beasley D, Shen H, Wang S, Seznec H, et al. Accuracy of three-dimensional proton imaging of an
inertial confinement fusion target assessed by Geant4 simulation. Nucl Instrum Methods Phys Res B. 2023;
536:38-44. https://doi.org/10.1016/j.nimb.2022.12.026.
[2] Michelet C, Li Z, Jalenques H, Incerti S, Barberet P, Devs G, et al. A Geant4 simulation of X-ray emission
for three-dimensional proton imaging of microscopic samples. Phys Med. 2022;94:85-93. https://doi.org/10.1016/j.ejmp.2021.12.002.
[3] Michelet C, Li Z, Yang W, Incerti S, Desbarats P, Giovannelli J-F, et al. A Geant4 simulation for
three-dimensional proton imaging of microscopic samples. Phys Med. 2019;65:172-80. https://doi.org/10.1016/j.ejmp.2019.08.022.
Contact:
michelet@lp2ib.in2p3.fr (Claire Michelet)
zhuxin.li@outlook.com (Zhuxin Li)
More information and a detailed UserGuide are available: http://geant4.in2p3.fr (Documentation section)
1 - GEOMETRY DEFINITION
Three phantoms are available, users can build up new phantoms or choose the following
three phantoms by setting the "phantom_type":
1) A simple cube (see publication [2-3]), phantom_type = 1
The absorber is a box made of a given material.
2) Upper part of Caenorhabditis elegans (C.elegans) worm (see publication [2-3]) , phantom_type = 2
C.elegans phantom is composed of 6 ellipsoids. The size and shape of ellipsoids are based on the
nanotoxicology studies carried-out at LP2I Bordeaux laboratory .
3) Inertial confinement fusion (ICF) target (see publication [1]), phantom_type = 3
ICF target is sphere shell, made of Ge-doped glow discharge polymer (GDP)
2 - PHYSICS LIST
Physics lists are based on modular design. Several modules are instantiated:
1) Transportation
2) EM physics
3) Decay physics
4) Hadron physics, optional
EM physics builders can be local or from G4 kernel physics_lists subdirectory.
- "emlivermore" default low-energy EM physics using Livermore data
- "local" local physics builders, options are explicit in PhysListEmStandard
- "emstandard_opt0" recommended standard EM physics for LHC
- "emstandard_opt1" best CPU performance standard physics for LHC
- "emstandard_opt2" similar fast simulation
- "emstandard_opt3" best standard EM options - analog to "local" above
- "emstandard_opt4" best current advanced EM options standard + lowenergy
- "emstandardWVI" standard EM physics and WentzelVI multiple scattering
- "emstandardSS" standard EM physics and single scattering model
- "emstandardGS" standard EM physics and Goudsmit-Saunderson multiple scatt.
- "empenelope" low-energy EM physics implementing Penelope models
- "emlowenergy" low-energy EM physics implementing experimental
Decay and StepMax processes are added to each list.
Optional components can be added:
- "elastic" elastic scattering of hadrons
- "binary" QBBC configuration of hadron inelastic models
- "binary_ion" Binary ion inelastic models
Physics lists and options can be (re)set with UI commands.
3 - HOW TO RUN
To run a PIXE tomography simulation in 'batch' mode using a pixe3d.mac file:
./stim_pixe_tomography -p pixe3d.mac
or if you want to specify the number of threads:
./stim_pixe_tomography -p pixe3d.mac N
N is the number of threads
An example of pixe3d.mac is provided.
It is designed for the PIXE-T simulation of the cube phantom of 40 um.
It is defined for 10 projections 1 slice 20 pixels. 1000000 protons are used for each beam.
To run a STIM tomography simulation:
./stim_pixe_tomography -s pixe3d_stim.mac
or if you want to specify the number of threads:
./stim_pixe_tomography -s pixe3d_stim.mac N
N is the number of threads
An example of pixe3d_stim.mac (arbitrarily name, you may rename it pixe3d.mac if you wish) is provided.
It is designed for the STIM-T simulation of the cube phantom of 40 um.
It is defined for 10 projections 1 slice 20 pixels. 100 protons are used for each beam.
4 - VISUALISATION
To visualize the phantoms, run:
./stim_pixe_tomography
5 - OUTPUT FILES
If a PIXE tomography simulation is made, two files are going to be generated:
1) GammaAtCreation.dat, which keeps the info of secondary photons at creation
2) GammaAtExit.dat, which keeps the info of secondary photons at exit of the phantom
If a STIM tomography simulation is made, ProtonAtExit.dat is generated, in which the info of primary protons is kept
6 - LIST OF MACROS AND SCRIPTS
Once you build the example, the following macros and script will be copied to your build directory:
pixe3d.mac: an example macro to run a PIXE-T simulation for cube of 40 um
pixe3d_stim.mac: an example macro to run a STIM-T simulation for cube of 40 um
pixe3d_initial.mac: it contains the information of physics processes
init_vis.mac and vis.mac: for the visualization
GPSPointLoop.C: it generates a macro file to run the simulation by reading pixe3d_initial.mac
In the Scripts folder, you will find other scripts for different uses.
To obtain the reconstruction data:
BinToStd_ProtonAtExit.C: it reads the STIM-T simulation results and generates the data file for STIM-T reconstruction using selection with particle momentum.
BinToStd_GammaAtCreation.C: it reads the PIXE-T simulation results for X-rays at creation and generates the data file for PIXE-T reconstruction using selection with particle momentum.
BinToStd_GammaAtExit.C: it reads the PIXE-T simulation results for X-rays at exit and generates the data file for PIXE-T reconstruction using selection with particle momentum.
BinToStd_proton_position.C: it reads the STIM-T simulation results and generates the data file for STIM-T reconstruction using selection with particle position and momentum
BinToStd_gamma_position.C: it reads the PIXE-T simulation results for X-rays and generates the data file for PIXE-T reconstruction using selection with particle position and momentum
To locate the interruption if an interruption of simulation occurs:
LocateInterruption_ProtonAtExit.C: in case of interruption, it locates the projection position of interruption for STIM-T simulation.
LocateInterruption_GammaAtExit.C: in case of interruption, it locates the projection position of interruption for PIXE-T simulation.
To obtain the reconstruction data in case of an interruption of simulation:***
Concatenate_BinToStd_ProtonAtExit.C: in case of one interruption, it reads STIM-T simulation results and generates the data file for STIM-T reconstruction.
Concatenate_BinToStd_GammaAtCreation.C: in case of one interruption, it reads PIXE-T simulation results for X-rays at creation and generates the data file for PIXE-T reconstruction.
Concatenate_BinToStd_GammaAtExit.C: in case of one interruption, it reads PIXE-T simulation results for X-rays at exit and generates the data file for PIXE-T reconstruction.
To visualize the spectrum:
Spectrum_proton.C: it visualizes the spectrum of protons and plots a histogram by reading simulation result ProtonAtExit.dat.
Spectrum_gamma.C: it visualizes the spectrum of X-rays and plots a histogram by reading simulation result GammaAtCreation.dat or GammaAtExit.dat.
TomoSpectrum_HIST_proton.C: it visualizes the spectrum of protons and plots a histogram by reading StimEvent data. It also writes the spectrum data in a txt file.
TomoSpectrum.C: it visualizes the spectrum of X-rays and plots a graph by reading PixeEvent data. It also writes the spectrum data in a txt file.
TomoSpectrum_HIST.C: it visualizes the spectrum of X-rays and plots a histogram by reading PixeEvent data. It also writes the spectrum data in a txt file.
Scripts for specific use:
Extract_Projection.C: it extracts 50 projections from a PixeEvent data file for tomographic reconstruction, which contains 100 projections. In fact, it extracts the projection 0, 2, 4, 6, 898 from projections 0-99. It eventually generates a new file with new index number of projections 0-49.
Check_PixeEventFile.C: it checks if the index of projections of a PixeEvent data file for tomographic reconstruction is correct. For example, if the user extract 50 projections from a data file composed 100 projections, it is necessary to make sure in the new data file, the index of projection starts from 0 and ends at 49.
Extract_Slice.C: it extracts a certain number of slice(s) from a PixeEvent data file for tomographic reconstruction. Users need to specify the first and the last slice to be extracted. Note that when writing a new data file, the index of slices will be initiated from 0.
Concatenate_BinToStd_GammaAtCreation_fabricate.C: if users make a PIXE-T simulation on a symmetrical object with only one projection, this script can be used to fabricate the other 99 projection data for X-rays at creation with same energy.
Concatenate_BinToStd_GammaAtExit_fabricate.C: if users make a PIXE-T simulation on a symmetrical object with only one projection, this script can be used to fabricate the other 99 projection data for X-rays at exit with same energy
Scripts to generate voxelized phantoms:***
In order to compare the reconstructed tomographic images with original
phantoms, it may be necessary to use a voxelized phantom.
generate_voxelized_sphere_phantom.py: it generates a voxelized phantom of an inertial confinement fusion target.
generate_voxelized_worm_phantom.py: it generates a voxelized phantom of the upper part of C. elegans.
More information can be found in the UserGuide.
examples/advanced/stim_pixe_tomography/README.md
+179
View File
@@ -0,0 +1,179 @@
# stim_pixe_tomography advanced example
The stim_pixe_tomography advanced example is developed to simulate three dimensional STIM or
PIXE tomography experiments. The simulation results are written in a binary file and can be easily accessed using the
provided scripts.
Publications:
[1] Li Z, Incerti S, Beasley D, Shen H, Wang S, Seznec H, et al. Accuracy of three-dimensional proton imaging of an
inertial confinement fusion target assessed by Geant4 simulation. Nucl Instrum Methods Phys Res B. 2023;
536:38-44. https://doi.org/10.1016/j.nimb.2022.12.026.
[2] Michelet C, Li Z, Jalenques H, Incerti S, Barberet P, Devs G, et al. A Geant4 simulation of X-ray emission
for three-dimensional proton imaging of microscopic samples. Phys Med. 2022;94:85-93. https://doi.org/10.1016/j.ejmp.2021.12.002.
[3] Michelet C, Li Z, Yang W, Incerti S, Desbarats P, Giovannelli J-F, et al. A Geant4 simulation for
three-dimensional proton imaging of microscopic samples. Phys Med. 2019;65:172-80. https://doi.org/10.1016/j.ejmp.2019.08.022.
Contact:
michelet@lp2ib.in2p3.fr (Claire Michelet)
zhuxin.li@outlook.com (Zhuxin Li)
More information and a detailed UserGuide are available:
http://geant4.in2p3.fr (Documentation section)
## 1 - GEOMETRY DEFINITION
Three phantoms are available, users can build up new phantoms or choose the following
three phantoms by setting the "phantom_type":
1) A simple cube (see publication [2-3]), phantom_type = 1
The absorber is a box made of a given material.
2) Upper part of Caenorhabditis elegans (C.elegans) worm (see publication [2-3]) , phantom_type = 2
C.elegans phantom is composed of 6 ellipsoids. The size and shape of ellipsoids are based on the
nanotoxicology studies carried-out at LP2I Bordeaux laboratory .
3) Inertial confinement fusion (ICF) target (see publication [1]), phantom_type = 3
ICF target is sphere shell, made of Ge-doped glow discharge polymer (GDP)
##2 - PHYSICS LIST
Physics lists are based on modular design. Several modules are instantiated:
1) Transportation
2) EM physics
3) Decay physics
4) Hadron physics, optional
EM physics builders can be local or from G4 kernel physics_lists subdirectory.
- "emlivermore" default low-energy EM physics using Livermore data
- "local" local physics builders, options are explicit in PhysListEmStandard
- "emstandard_opt0" recommended standard EM physics for LHC
- "emstandard_opt1" best CPU performance standard physics for LHC
- "emstandard_opt2" similar fast simulation
- "emstandard_opt3" best standard EM options - analog to "local" above
- "emstandard_opt4" best current advanced EM options standard + lowenergy
- "emstandardWVI" standard EM physics and WentzelVI multiple scattering
- "emstandardSS" standard EM physics and single scattering model
- "emstandardGS" standard EM physics and Goudsmit-Saunderson multiple scatt.
- "empenelope" low-energy EM physics implementing Penelope models
- "emlowenergy" low-energy EM physics implementing experimental
Decay and StepMax processes are added to each list.
Optional components can be added:
- "elastic" elastic scattering of hadrons
- "binary" QBBC configuration of hadron inelastic models
- "binary_ion" Binary ion inelastic models
Physics lists and options can be (re)set with UI commands.
##3 - HOW TO RUN
To run a PIXE tomography simulation in 'batch' mode using a pixe3d.mac file:
./stim_pixe_tomography -p pixe3d.mac
or if you want to specify the number of threads:
./stim_pixe_tomography -p pixe3d.mac N
N is the number of threads
An example of pixe3d.mac is provided.
It is designed for the PIXE-T simulation of the cube phantom of 40 um.
It is defined for 10 projections 1 slice 20 pixels. 1000000 protons are used for each beam.
To run a STIM tomography simulation:
./stim_pixe_tomography -s pixe3d_stim.mac
or if you want to specify the number of threads:
./stim_pixe_tomography -s pixe3d_stim.mac N
N is the number of threads
An example of pixe3d_stim.mac (arbitrarily name, you may rename it pixe3d.mac if you wish) is provided.
It is designed for the STIM-T simulation of the cube phantom of 40 um.
It is defined for 10 projections 1 slice 20 pixels. 100 protons are used for each beam.
##4 - VISUALISATION
To visualize the phantoms, run:
./stim_pixe_tomography
##5 - OUTPUT FILES
If a PIXE tomography simulation is made, two files are going to be generated:
1) GammaAtCreation.dat, which keeps the info of secondary photons at creation
2) GammaAtExit.dat, which keeps the info of secondary photons at exit of the phantom
If a STIM tomography simulation is made, ProtonAtExit.dat is generated, in which the info of primary protons is kept
##6 - LIST OF MACROS AND SCRIPTS
Once you build the example, the following macros and script will be copied to your build directory:
pixe3d.mac: an example macro to run a PIXE-T simulation for cube of 40 um
pixe3d_stim.mac: an example macro to run a STIM-T simulation for cube of 40 um
pixe3d_initial.mac: it contains the information of physics processes
init_vis.mac and vis.mac: for the visualization
GPSPointLoop.C: it generates a macro file to run the simulation by reading pixe3d_initial.mac
In the **Scripts** folder, you will find other scripts for different uses.
***To obtain the reconstruction data:***
BinToStd_ProtonAtExit.C: it reads the STIM-T simulation results and generates the data file for STIM-T reconstruction using selection with particle momentum.
BinToStd_GammaAtCreation.C: it reads the PIXE-T simulation results for X-rays at creation and generates the data file for PIXE-T reconstruction using selection with particle momentum.
BinToStd_GammaAtExit.C: it reads the PIXE-T simulation results for X-rays at exit and generates the data file for PIXE-T reconstruction using selection with particle momentum.
BinToStd_proton_position.C: it reads the STIM-T simulation results and generates the data file for STIM-T reconstruction using selection with particle position and momentum
BinToStd_gamma_position.C: it reads the PIXE-T simulation results for X-rays and generates the data file for PIXE-T reconstruction using selection with particle position and momentum
***To locate the interruption if an interruption of simulation occurs:***
LocateInterruption_ProtonAtExit.C: in case of interruption, it locates the projection position of interruption for STIM-T simulation.
LocateInterruption_GammaAtExit.C: in case of interruption, it locates the projection position of interruption for PIXE-T simulation.
***To obtain the reconstruction data in case of an interruption of simulation:***
Concatenate_BinToStd_ProtonAtExit.C: in case of one interruption, it reads STIM-T simulation results and generates the data file for STIM-T reconstruction.
Concatenate_BinToStd_GammaAtCreation.C: in case of one interruption, it reads PIXE-T simulation results for X-rays at creation and generates the data file for PIXE-T reconstruction.
Concatenate_BinToStd_GammaAtExit.C: in case of one interruption, it reads PIXE-T simulation results for X-rays at exit and generates the data file for PIXE-T reconstruction.
***To visualize the spectrum:***
Spectrum_proton.C: it visualizes the spectrum of protons and plots a histogram by reading simulation result ProtonAtExit.dat.
Spectrum_gamma.C: it visualizes the spectrum of X-rays and plots a histogram by reading simulation result GammaAtCreation.dat or GammaAtExit.dat.
TomoSpectrum_HIST_proton.C: it visualizes the spectrum of protons and plots a histogram by reading StimEvent data. It also writes the spectrum data in a txt file.
TomoSpectrum.C: it visualizes the spectrum of X-rays and plots a graph by reading PixeEvent data. It also writes the spectrum data in a txt file.
TomoSpectrum_HIST.C: it visualizes the spectrum of X-rays and plots a histogram by reading PixeEvent data. It also writes the spectrum data in a txt file.
***Scripts for specific use:***
Extract_Projection.C: it extracts 50 projections from a PixeEvent data file for tomographic reconstruction, which contains 100 projections. In fact, it extracts the projection 0, 2, 4, 6, 898 from projections 0-99. It eventually generates a new file with new index number of projections 0-49.
Check_PixeEventFile.C: it checks if the index of projections of a PixeEvent data file for tomographic reconstruction is correct. For example, if the user extract 50 projections from a data file composed 100 projections, it is necessary to make sure in the new data file, the index of projection starts from 0 and ends at 49.
Extract_Slice.C: it extracts a certain number of slice(s) from a PixeEvent data file for tomographic reconstruction. Users need to specify the first and the last slice to be extracted. Note that when writing a new data file, the index of slices will be initiated from 0.
Concatenate_BinToStd_GammaAtCreation_fabricate.C: if users make a PIXE-T simulation on a symmetrical object with only one projection, this script can be used to fabricate the other 99 projection data for X-rays at creation with same energy.
Concatenate_BinToStd_GammaAtExit_fabricate.C: if users make a PIXE-T simulation on a symmetrical object with only one projection, this script can be used to fabricate the other 99 projection data for X-rays at exit with same energy
***Scripts to generate voxelized phantoms:***
In order to compare the reconstructed tomographic images with original
phantoms, it may be necessary to use a voxelized phantom.
generate_voxelized_sphere_phantom.py: it generates a voxelized phantom of an inertial confinement fusion target.
generate_voxelized_worm_phantom.py: it generates a voxelized phantom of the upper part of C. elegans.
More information can be found in the UserGuide.
examples/advanced/stim_pixe_tomography/Scripts/BinToStd_GammaAtCreation.C
+199
View File
@@ -0,0 +1,199 @@
//******************************************************************************************
// BinToStd_GammaAtCreation.C
// Root command file
// Type: root BinToStd_GammaAtCreation.C
//
// Read the output file GammaAtCreation.dat that is generated by Geant4
// tomography simulation It read all the gamma at creation information, and
// rewrite the events in a binary file PixeEvent_std_AtCreation.DAT
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//*******************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
// Define a structure to read and write each event in the required binary format
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
struct Point
{
double m_x;
double m_y;
double m_z;
};
// double DegreeToRadian(double degree) { return (PI * degree / 180.); }
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else
return true;
}
void BinToStd_GammaAtCreation()
{
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 1;
const int nbPixel = 20;
double totalAngleSpan = 180.; // in degree
double angleOfDetector = 135.; // angle of detector relative to the incident
// direction of the primary protons //
double distanceObjectDetector = 22.; // 22 mm
double radiusOfDetector = 5.; // 5 mm
// double theta = atan(radiusOfDetector/distanceObjectDetector); //half apex
// angle of the right circular cone in radian
double theta = 70 * TMath::DegToRad(); // in radian
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
FILE* input = fopen("../build/GammaAtCreation.dat", "rb");
FILE* out = fopen("../build/PixeEvent_std_AtCreation.DAT", "wb");
if (input == NULL) {
printf("error for opening the input GammaAtCreation.dat file\n");
return;
}
RunInfo runInfo;
PixeEvent pixeEvent;
Point centerOfDetector;
Point gammaMomentum;
long long count = 0;
int runID = -1; // index of simulations, namely runID, starting from 0
// while(!feof(input)) //if not the end, read
while (fread(&runInfo, sizeof(RunInfo), 1, input)) {
runID++;
// if(runID==5) continue;
int nbParticle = runInfo.nbParticle;
//(begin)*****************************************************************
// the following codes are used only when in the simulation
// the index of projection, slice and pixel is not
// correctly configured
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
//(end)******************************************************************
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf(
"---------RunID=%d:\nProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d,"
"nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
if (!nbParticle) continue;
std::vector<ParticleInfo> gammaAtCreation(nbParticle);
fread(&gammaAtCreation[0], sizeof(ParticleInfo), nbParticle, input);
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means
// the angle between source direction and detector, which should be constant
// when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// gamma selection: energy should be lower than 4095*10eV = 49.45 keV
if (gammaAtCreation[i].energy_keV >= 40.95 || gammaAtCreation[i].energy_keV <= 0.9)
continue; // gamma selection
gammaMomentum.m_x = gammaAtCreation[i].mx;
gammaMomentum.m_y = gammaAtCreation[i].my;
gammaMomentum.m_z = gammaAtCreation[i].mz;
if (!IsDetected(centerOfDetector, gammaMomentum, theta))
continue;
else {
pixeEvent.energy_10eV = floor(100 * gammaAtCreation[i].energy_keV + 0.5);
pixeEvent.projectionIndex = runInfo.projectionIndex;
pixeEvent.sliceIndex = runInfo.sliceIndex;
pixeEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&pixeEvent, 7, 1, out);
count++;
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
// printf("momentum: (%f, %f, %f), energy: %f keV %d 10eV\n",
// gammaAtCreation[i].mx, gammaAtCreation[i].my, gammaAtCreation[i].mz,
// gammaAtCreation[i].energy_keV, pixeEvent.energy_10eV);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
}
}
}
printf(
"---------------Number of PixeEvent in total: "
"%lld------------------------\n",
count);
fclose(input);
fclose(out);
// Recheck the output file in case
// FILE* input2 = fopen("PixeEvent_std_AtCreation.DAT","rb");
// PixeEvent p;
// while(fread(&p, 7, 1, input2))
// {
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d,
// Energy_10eV=%d\n", p.projectionIndex, p.sliceIndex, p.pixelIndex,
// p.energy_10eV);
// }
// fclose(input2);
}
examples/advanced/stim_pixe_tomography/Scripts/BinToStd_GammaAtExit.C
+196
View File
@@ -0,0 +1,196 @@
//***********************************************************************************************************
// BinToStd_GammaAtExit.C
// Root command file
// Type: root BinToStd_GammaAtExit.C
//
// Read the output file ProtonAtExit.dat that is generated by Geant4 tomography
// simulation It read all the gamma at exit information, and rewrite the events
// in a binary file PixeEvent_std_AtExit.DAT
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
// Define a structure to read and write each event in the required binary format
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
struct Point
{
double m_x;
double m_y;
double m_z;
};
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else
return true;
}
void BinToStd_GammaAtExit()
{
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 1;
const int nbPixel = 20;
double totalAngleSpan = 180.; // in degree
double angleOfDetector = 135.; // angle of detector relative to the incident
// direction of the primary protons //
double distanceObjectDetector = 22.; // 22 mm
double radiusOfDetector = 5.; // 5 mm
// double theta = atan(radiusOfDetector/distanceObjectDetector); //half apex
// angle of the right circular cone in radian
double theta = 70 * TMath::DegToRad(); // in radian
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
FILE* input = fopen("../build/GammaAtExit.dat", "rb");
FILE* out = fopen("../build/PixeEvent_std_AtExit.DAT", "wb");
if (input == NULL) {
printf("error for opening the input GammaAtExit.dat file\n");
return;
}
RunInfo runInfo;
PixeEvent pixeEvent;
Point centerOfDetector;
Point gammaMomentum;
long long count = 0;
int runID = -1; // index of simulations, namely runID, starting from 0
// while(!feof(input)) //if not the end, read
while (fread(&runInfo, sizeof(RunInfo), 1, input)) {
runID++;
int nbParticle = runInfo.nbParticle;
// the following codes are used only when in the simulation
// ************(begin) the index of projection, slice and pixel is not
// correctly configured
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
//************************************************************************(end)
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf(
"---------RunID=%d:\nProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d,"
"nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
if (!nbParticle) continue;
std::vector<ParticleInfo> gammaAtExit(nbParticle);
fread(&gammaAtExit[0], sizeof(ParticleInfo), nbParticle, input);
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means
// the angle between source direction and detector, which should be constant
// when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// gamma selection: energy should be lower than 4095*10eV = 49.45 keV
if (gammaAtExit[i].energy_keV >= 40.95 || gammaAtExit[i].energy_keV <= 0.9) continue;
gammaMomentum.m_x = gammaAtExit[i].mx;
gammaMomentum.m_y = gammaAtExit[i].my;
gammaMomentum.m_z = gammaAtExit[i].mz;
if (!IsDetected(centerOfDetector, gammaMomentum, theta))
continue;
else {
pixeEvent.energy_10eV = floor(100 * gammaAtExit[i].energy_keV + 0.5);
pixeEvent.projectionIndex = runInfo.projectionIndex;
pixeEvent.sliceIndex = runInfo.sliceIndex;
pixeEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&pixeEvent, 7, 1, out);
count++;
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
// printf("momentum: (%f, %f, %f), energy: %f keV %d 10eV\n",
// gammaAtExit[i].mx, gammaAtExit[i].my, gammaAtExit[i].mz,
// gammaAtExit[i].energy_keV, pixeEvent.energy_10eV);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
}
}
}
printf(
"\n---------------Number of PixeEvent in total: "
"%lld------------------------\n",
count);
fclose(input);
fclose(out);
// Recheck the output file in case
// FILE* input2;
// input2 = fopen("PixeEvent_std_AtExit.DAT","rb");
// PixeEvent p;
// while(fread(&p, 7, 1, input2))
// {
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d,
// Energy_10eV=%d\n", p.projectionIndex, p.sliceIndex, p.pixelIndex,
// p.energy_10eV);
// }
// fclose(input2);
}
examples/advanced/stim_pixe_tomography/Scripts/BinToStd_ProtonAtExit.C
+184
View File
@@ -0,0 +1,184 @@
//***********************************************************************************************************
// BinToStd_ProtonAtExit.C
// Root command file
// Type: root BinToStd_ProtonAtExit.C
//
// Read the output file ProtonAtExit.dat that is generated by Geant4 tomography simulation
// It reads proton at exit information, and rewrite the events in a binary file StimEvent_std.DAT
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
// Define a structure to read and write each event in the required binary format
struct StimEvent
{
uint16_t energy_keV; // different from Pixe Event, it is in keV
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
struct Point
{
double m_x;
double m_y;
double m_z;
};
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else
return true;
}
void BinToStd_ProtonAtExit()
{
//***********************************************************************
//**************************Detection parameters (begin)****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 1;
const int nbPixel = 20;
double totalAngleSpan = 180.; // in degree
// angle of detector relative to the incident direction of the primary protons at first projection
// for proton, it is fixed to 0 degree, namely opposite to the source
double angleOfDetector = 0.;
double distanceObjectDetector = 22.; // 22 mm
double radiusOfDetector = 5.; // 5 mm
// double theta = atan(radiusOfDetector/distanceObjectDetector); //half apex angle of the right
// circular cone in radian
double theta = 10.2 * TMath::DegToRad(); // in radian
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
FILE* input = fopen("../build/ProtonAtExit.dat", "rb");
FILE* out = fopen("../build/StimEvent_std.DAT", "wb");
if (input == NULL) {
printf("error for opening the input ProtonAtExit.dat file\n");
return;
}
RunInfo runInfo;
StimEvent stimEvent;
Point centerOfDetector;
Point protonMomentum;
long long count = 0;
int runID = -1;
// while(!feof(input)) //if not the end, read
while (fread(&runInfo, sizeof(RunInfo), 1, input)) {
runID++;
int nbParticle = runInfo.nbParticle;
//(begin)***************************************************************
// the following codes are used only when in the simulation
// the index of projection, slice and pixel is not
// correctly configured
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
//(end)******************************************************************
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf("---------RunID=%d: ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
if (!nbParticle) continue;
std::vector<ParticleInfo> protonAtExit(nbParticle);
fread(&protonAtExit[0], sizeof(ParticleInfo), nbParticle, input);
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means the angle between
// source direction and detector, which should be constant when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// proton selection: energy should be lower than 4095 keV
if (protonAtExit[i].energy_keV >= 4095) continue; // proton selection
protonMomentum.m_x = protonAtExit[i].mx;
protonMomentum.m_y = protonAtExit[i].my;
protonMomentum.m_z = protonAtExit[i].mz;
if (!IsDetected(centerOfDetector, protonMomentum, theta))
continue;
else {
stimEvent.energy_keV = floor(protonAtExit[i].energy_keV + 0.5);
stimEvent.projectionIndex = runInfo.projectionIndex;
stimEvent.sliceIndex = runInfo.sliceIndex;
stimEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&stimEvent, 7, 1, out);
count++;
// printf("energy=%f keV\n",protonAtExit[i].energy_keV);
}
}
}
printf("---------------Number of StimEvent in total: %lld------------------------\n", count);
fclose(input);
fclose(out);
// FILE* input2;
// input2 = fopen("StimEvent_std.DAT","rb");
// StimEvent p;
// double eventId = -1;
// while(fread(&p, 7, 1, input2))
// {
// if(p.projectionIndex == 8 &&p.sliceIndex ==64 && p.pixelIndex==64)
// {
// eventId++;
// printf("StimEvent_%.0f ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_keV=%d keV\n",
// eventId, p.projectionIndex, p.sliceIndex, p.pixelIndex, p.energy_keV);
// }
// }
// fclose(input2);
}
examples/advanced/stim_pixe_tomography/Scripts/BinToStd_gamma_position.C
+296
View File
@@ -0,0 +1,296 @@
//***********************************************************************************************************
// BinToStd_gamma_position.C
// Root command file
// Type: root BinToStd_gamma_position.C
//
// Read the X-ray output file that is generated by Geant4 tomography
// simulation. It reads gamma information, either at creation, or at exit, and rewrite the events
// in a binary file PixeEvent_std.DAT
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
bool IsEqual(double a, double b, double eps, double releps)
{
if (a == b) {
return true;
}
if (fabs(a - b) <= releps * fabs(b)) {
return true;
}
if (fabs(a - b) < eps) {
return true;
}
return false;
}
double eps = 1e-20; // absolut difference
double releps = 1e-10; // relative difference
// Define a structure to read and write each event in the required binary format
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
float x;
float y;
float z;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
struct Point
{
double m_x;
double m_y;
double m_z;
};
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else {
// printf(" acos: %f, radius: %f\n", r, theta);
return true;
}
}
bool IsDetected_position(Point poi1, Point poi2, double r)
{
double a = sqrt((poi1.m_x - poi2.m_x) * (poi1.m_x - poi2.m_x)
+ (poi1.m_y - poi2.m_y) * (poi1.m_y - poi2.m_y)
+ (poi1.m_z - poi2.m_z) * (poi1.m_z - poi2.m_z));
// if(a <= r) return true;
if (a > r)
return false;
else {
// printf(" distance of two points: %f, radius: %f\n", a, r);
return true;
}
}
void BinToStd_gamma_position()
{
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 1;
const int nbSlice = 1;
const int nbPixel = 1;
double totalAngleSpan = 180.; // in degree
double angleOfDetector = 135.; // angle of detector relative to the incident
double distanceObjectDetector = 22000.; // um
// double theta = atan(radiusOfDetector/distanceObjectDetector); //half apex
// angle of the right circular cone in radian
double theta = 14.726 * TMath::DegToRad(); // in radian
double radiusOfDetector = distanceObjectDetector * tan(theta);
bool usePosition = true;
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
FILE* input = fopen("../build/GammaAtExit.dat", "rb");
FILE* out = fopen("../build/PixeEvent_std_AtExit.DAT", "wb");
if (input == NULL) {
printf("error for opening the input file\n");
return;
}
RunInfo runInfo;
PixeEvent pixeEvent;
Point centerOfDetector;
Point gammaMomentum;
Point gammaPosition;
Point intersectionPoint;
long long count = 0;
int runID = -1; // index of simulations, namely runID, starting from 0
// while(!feof(input)) //if not the end, read
while (fread(&runInfo, sizeof(RunInfo), 1, input)) {
runID++;
int nbParticle = runInfo.nbParticle;
//(begin)****************************************************************
// the following codes are used only when in the simulation
// the index of projection, slice and pixel is not
// correctly configured
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
//(end)******************************************************************
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf(
"---------RunID=%d:\nProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d,"
"nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
if (!nbParticle) continue;
std::vector<ParticleInfo> gammaAtExit(nbParticle);
fread(&gammaAtExit[0], sizeof(ParticleInfo), nbParticle, input);
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means
// the angle between source direction and detector, which should be constant
// when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// gamma selection: energy should be lower than 4095*10eV = 49.45 keV
if (gammaAtExit[i].energy_keV >= 40.95 || gammaAtExit[i].energy_keV <= 0.9) continue;
gammaMomentum.m_x = gammaAtExit[i].mx;
gammaMomentum.m_y = gammaAtExit[i].my;
gammaMomentum.m_z = gammaAtExit[i].mz;
if (!usePosition) {
if (!IsDetected(centerOfDetector, gammaMomentum, theta)) continue;
}
else {
double c =
distanceObjectDetector * (gammaMomentum.m_x * cos(ra) + gammaMomentum.m_y * sin(ra));
if (IsEqual(0, c, eps, releps)) continue; // parallel
gammaPosition.m_x = gammaAtExit[i].x;
gammaPosition.m_y = gammaAtExit[i].y;
gammaPosition.m_z = gammaAtExit[i].z;
double t = (distanceObjectDetector * distanceObjectDetector
- gammaPosition.m_x * distanceObjectDetector * cos(ra)
- gammaPosition.m_y * distanceObjectDetector * sin(ra))
/ c;
intersectionPoint.m_x = gammaPosition.m_x + gammaMomentum.m_x * t;
intersectionPoint.m_y = gammaPosition.m_y + gammaMomentum.m_y * t;
intersectionPoint.m_z = gammaPosition.m_z + gammaMomentum.m_z * t;
if (!IsDetected_position(centerOfDetector, intersectionPoint, radiusOfDetector)) continue;
// printf(" t = %f, intersection point: (%f, %f, %f) centor of detector: (%f, %f, %f)
// 111=%f, 222=%f \n", t, intersectionPoint.m_x,intersectionPoint.m_y,intersectionPoint.m_z,
// centerOfDetector.m_x,centerOfDetector.m_y,centerOfDetector.m_z,
// (distanceObjectDetector*distanceObjectDetector-gammaPosition.m_x*distanceObjectDetector*cos(ra)
// -gammaPosition.m_y*distanceObjectDetector*sin(ra)), c);
// printf(" distanceObjectDetector = %f, gammaPosition.m_x=%f,
// distanceObjectDetector*cos(ra)=%f, gammaPosition.m_y=%f,
// distanceObjectDetector*sin(ra)=%f\n", distanceObjectDetector, gammaPosition.m_x,
// distanceObjectDetector*cos(ra),
// gammaPosition.m_y,
// distanceObjectDetector*sin(ra));
double tt = (intersectionPoint.m_x - gammaPosition.m_x) * gammaMomentum.m_x
+ (intersectionPoint.m_y - gammaPosition.m_y) * gammaMomentum.m_y
+ (intersectionPoint.m_z - gammaPosition.m_z) * gammaMomentum.m_z;
if (tt < 0) continue;
}
pixeEvent.energy_10eV = floor(100 * gammaAtExit[i].energy_keV + 0.5);
pixeEvent.projectionIndex = runInfo.projectionIndex;
pixeEvent.sliceIndex = runInfo.sliceIndex;
pixeEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&pixeEvent, 7, 1, out);
count++;
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
if (!usePosition) {
printf(
"---------id = %d, RunID=%d ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, momentum: "
"(%f, %f, %f), energy: %f keV\n",
i, runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex,
gammaAtExit[i].mx, gammaAtExit[i].my, gammaAtExit[i].mz, gammaAtExit[i].energy_keV);
}
else {
// printf("---------id = %d, RunID=%d ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d,
// momentum: (%f, %f, %f), energy: %f keV, position: (%f, %f, %f)\n", i, runID,
// runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, gammaAtExit[i].mx,
// gammaAtExit[i].my, gammaAtExit[i].mz, gammaAtExit[i].energy_keV, gammaAtExit[i].x,
// gammaAtExit[i].y, gammaAtExit[i].z);
printf(
"---------id = %d, RunID=%d ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, momentum: "
"(%f, %f, %f), energy: %f keV\n",
i, runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex,
gammaAtExit[i].mx, gammaAtExit[i].my, gammaAtExit[i].mz, gammaAtExit[i].energy_keV);
}
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
}
}
printf(
"\n---------------Number of PixeEvent in total: "
"%lld------------------------\n",
count);
fclose(input);
fclose(out);
// Recheck the output file in case
// FILE* input2;
// input2 = fopen("PixeEvent_std_AtExit.DAT","rb");
// PixeEvent p;
// while(fread(&p, 7, 1, input2))
// {
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d,
// Energy_10eV=%d\n", p.projectionIndex, p.sliceIndex, p.pixelIndex,
// p.energy_10eV);
// }
// fclose(input2);
}
examples/advanced/stim_pixe_tomography/Scripts/BinToStd_proton_position.C
+305
View File
@@ -0,0 +1,305 @@
//***********************************************************************************************************
// BinToStd_proton_position.C
// Root command file
// Type: root BinToStd_proton_position.C
//
// Read the X-ray output file that is generated by Geant4 tomography
// simulation. It reads gamma information, either at creation, or at exit, and rewrite the events
// in a binary file StimEvent_std.DAT
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
bool IsEqual(double a, double b, double eps, double releps)
{
if (a == b) {
return true;
}
if (fabs(a - b) <= releps * fabs(b)) {
return true;
}
if (fabs(a - b) < eps) {
return true;
}
return false;
}
double eps = 1e-20; // absolut difference
double releps = 1e-10; // relative difference
// Define a structure to read and write each event in the required binary format
struct StimEvent
{
uint16_t energy_keV; // different from Pixe Event, it is in keV
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
float x;
float y;
float z;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
struct Point
{
double m_x;
double m_y;
double m_z;
};
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else {
// printf(" acos: %f, radius: %f\n", r, theta);
return true;
}
}
bool IsDetected_position(Point poi1, Point poi2, double r)
{
double a = sqrt((poi1.m_x - poi2.m_x) * (poi1.m_x - poi2.m_x)
+ (poi1.m_y - poi2.m_y) * (poi1.m_y - poi2.m_y)
+ (poi1.m_z - poi2.m_z) * (poi1.m_z - poi2.m_z));
// if(a <= r) return true;
if (a > r)
return false;
else {
// printf(" distance of two points: %f, radius: %f\n", a, r);
return true;
}
}
void BinToStd_proton_position()
{
// printf("%f %f %f\n", acos(1), acos(-1), acos(0));
// return;
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 1;
const int nbSlice = 1;
const int nbPixel = 1;
double totalAngleSpan = 180.; // in degree
double angleOfDetector = 0.; // angle of detector relative to the incident
double distanceObjectDetector = 22000.; // um
// double theta = atan(radiusOfDetector/distanceObjectDetector); //half apex
// angle of the right circular cone in radian
double theta = 10.2 * TMath::DegToRad(); // in radian
double radiusOfDetector = distanceObjectDetector * tan(theta);
bool usePosition = true;
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
FILE* input = fopen("../build/ProtonAtExit.dat", "rb");
FILE* out = fopen("../build/StimEvent_std", "wb");
if (input == NULL) {
printf("error for opening the input file\n");
return;
}
RunInfo runInfo;
StimEvent stimEvent;
Point centerOfDetector;
Point protonMomentum;
Point protonPosition;
Point intersectionPoint;
long long count = 0;
int runID = -1; // index of simulations, namely runID, starting from 0
// while(!feof(input)) //if not the end, read
while (fread(&runInfo, sizeof(RunInfo), 1, input)) {
runID++;
int nbParticle = runInfo.nbParticle;
//(begin)****************************************************************
// the following codes are used only when in the simulation
// the index of projection, slice and pixel is not
// correctly configured
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
//(end)*******************************************************************
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf(
"---------RunID=%d:\nProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d,"
"nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
if (!nbParticle) continue;
std::vector<ParticleInfo> protonAtExit(nbParticle);
fread(&protonAtExit[0], sizeof(ParticleInfo), nbParticle, input);
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means
// the angle between source direction and detector, which should be constant
// when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// proton selection: energy should be lower than 4095 keV
if (protonAtExit[i].energy_keV >= 4095) continue;
protonMomentum.m_x = protonAtExit[i].mx;
protonMomentum.m_y = protonAtExit[i].my;
protonMomentum.m_z = protonAtExit[i].mz;
if (!usePosition) {
if (!IsDetected(centerOfDetector, protonMomentum, theta)) continue;
}
else {
double c =
distanceObjectDetector * (protonMomentum.m_x * cos(ra) + protonMomentum.m_y * sin(ra));
if (IsEqual(0, c, eps, releps)) continue; // parallel
protonPosition.m_x = protonAtExit[i].x;
protonPosition.m_y = protonAtExit[i].y;
protonPosition.m_z = protonAtExit[i].z;
double t = (distanceObjectDetector * distanceObjectDetector
- protonPosition.m_x * distanceObjectDetector * cos(ra)
- protonPosition.m_y * distanceObjectDetector * sin(ra))
/ c;
intersectionPoint.m_x = protonPosition.m_x + protonMomentum.m_x * t;
intersectionPoint.m_y = protonPosition.m_y + protonMomentum.m_y * t;
intersectionPoint.m_z = protonPosition.m_z + protonMomentum.m_z * t;
if (!IsDetected_position(centerOfDetector, intersectionPoint, radiusOfDetector)) continue;
// printf(" t = %f, intersection point: (%f, %f, %f) centor of detector: (%f, %f, %f)
// 111=%f, 222=%f \n", t, intersectionPoint.m_x,intersectionPoint.m_y,intersectionPoint.m_z,
// centerOfDetector.m_x,centerOfDetector.m_y,centerOfDetector.m_z,
// (distanceObjectDetector*distanceObjectDetector-protonPosition.m_x*distanceObjectDetector*cos(ra)
// -protonPosition.m_y*distanceObjectDetector*sin(ra)), c);
// printf(" distanceObjectDetector = %f, protonPosition.m_x=%f,
// distanceObjectDetector*cos(ra)=%f, protonPosition.m_y=%f,
// distanceObjectDetector*sin(ra)=%f\n", distanceObjectDetector, protonPosition.m_x,
// distanceObjectDetector*cos(ra),
// protonPosition.m_y,
// distanceObjectDetector*sin(ra));
double tt = (intersectionPoint.m_x - protonPosition.m_x) * protonMomentum.m_x
+ (intersectionPoint.m_y - protonPosition.m_y) * protonMomentum.m_y
+ (intersectionPoint.m_z - protonPosition.m_z) * protonMomentum.m_z;
if (tt < 0) continue;
}
stimEvent.energy_10eV = floor(100 * protonAtExit[i].energy_keV + 0.5);
stimEvent.projectionIndex = runInfo.projectionIndex;
stimEvent.sliceIndex = runInfo.sliceIndex;
stimEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&stimEvent, 7, 1, out);
count++;
//***********************************************************************
//**************************Print information
//(begin)********************
//***********************************************************************
if (!usePosition) {
printf(
"---------id = %d, RunID=%d ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, momentum: "
"(%f, %f, %f), energy: %f keV\n",
i, runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex,
protonAtExit[i].mx, protonAtExit[i].my, protonAtExit[i].mz, protonAtExit[i].energy_keV);
}
else {
// printf("---------id = %d, RunID=%d ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d,
// momentum: (%f, %f, %f), energy: %f keV, position: (%f, %f, %f)\n", i, runID,
// runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, protonAtExit[i].mx,
// protonAtExit[i].my, protonAtExit[i].mz, protonAtExit[i].energy_keV, protonAtExit[i].x,
// protonAtExit[i].y, protonAtExit[i].z);
printf(
"---------id = %d, RunID=%d ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, momentum: "
"(%f, %f, %f), energy: %f keV\n",
i, runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex,
protonAtExit[i].mx, protonAtExit[i].my, protonAtExit[i].mz, protonAtExit[i].energy_keV);
}
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
}
}
printf(
"\n---------------Number of StimEvent in total: "
"%lld------------------------\n",
count);
fclose(input);
fclose(out);
// FILE* input2;
// input2 = fopen("StimEvent_std.DAT","rb");
// StimEvent p;
// double eventId = -1;
// while(fread(&p, 7, 1, input2))
// {
// if(p.projectionIndex == 8 &&p.sliceIndex ==64 && p.pixelIndex==64)
// {
// eventId++;
// printf("StimEvent_%.0f ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_keV=%d keV\n",
// eventId, p.projectionIndex, p.sliceIndex, p.pixelIndex, p.energy_keV);
// }
// }
// fclose(input2);
}
examples/advanced/stim_pixe_tomography/Scripts/Check_PixeEventFile.C
+85
View File
@@ -0,0 +1,85 @@
//***********************************************************************************************************
// Check_PixeEventFile.C
// Root command file
// Use it by typing in the command line of Root terminal: root Check_PixeEventFile.C
//
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
#define PI 3.14159265f
// Define a structure to read and write each event in the required binary format
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
double DegreeToRadian(double degree)
{
return (PI * degree / 180.);
}
struct Point
{
double m_x;
double m_y;
double m_z;
};
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else
return true;
}
void Check_PixeEventFile()
{
FILE* input2 =
fopen("../build/PixeEvent_std_AtExit_Detector135_Aperture70_50Projections.DAT", "rb");
PixeEvent ppp;
int proj = -1;
while (fread(&ppp, 7, 1, input2)) {
if (ppp.projectionIndex != proj) {
printf("__ProjectionIndex=%d\n", ppp.projectionIndex);
proj = ppp.projectionIndex;
}
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_10eV=%d\n",
// ppp.projectionIndex, ppp.sliceIndex, ppp.pixelIndex, ppp.energy_10eV);
}
fclose(input2);
}
examples/advanced/stim_pixe_tomography/Scripts/Concatenate_BinToStd_GammaAtCreation.C
+279
View File
@@ -0,0 +1,279 @@
//***********************************************************************************************************
// Concatenate_BinToStd_GammaAtCreation.C
// Root command file
// Type: root Concatenate_BinToStd_GammaAtCreation.C
//
// It is used in case of interruption
// Read 2 output files GammaAtCreation_1.dat and GammaAtCreation_2.dat that are generated by Geant4
// tomography simulation. It reads all the gamma at creation information, and rewrite the events in
// a binary file PixeEvent_std_AtCreation.DAT
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
// Define a structure to read and write each event in the required binary format
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
struct Point
{
double m_x;
double m_y;
double m_z;
};
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else
return true;
}
void Concatenate_BinToStd_GammaAtCreation()
{
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 1;
const int nbPixel = 20;
double totalAngleSpan = 180.; // in degree
double angleOfDetector =
135.; // angle of detector relative to the incident direction of the primary protons //
double distanceObjectDetector = 22.; // 22 mm
double radiusOfDetector = 5.; // 5 mm
// double theta = atan(radiusOfDetector/distanceObjectDetector); //half apex angle of the right
// circular cone in radian
double theta = 70 * TMath::DegToRad(); // in radian
int P_interrupt = 6; // Projection of interruption
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
// assuming there is one interruption
FILE* input1 = fopen("../build/GammaAtCreation_1.dat", "rb");
FILE* input2 = fopen("../build/GammaAtCreation_2.dat", "rb");
FILE* out = fopen("../build/PixeEvent_std_AtCreation.DAT", "wb");
if (input1 == NULL) {
printf("error for opening the input GammaAtCreation_1.dat file\n");
return;
}
if (input2 == NULL) {
printf("error for opening the input GammaAtCreation_2.dat file\n");
return;
}
RunInfo runInfo;
PixeEvent pixeEvent;
Point centerOfDetector;
Point gammaMomentum;
long long count1 = 0;
long long count2 = 0;
int runID = -1; // index of simulations, namely runID, starting from 0
// ************************************************************(begin)
// **********************READ FIRST FILE***********************
// ************************************************************
while (fread(&runInfo, sizeof(RunInfo), 1, input1)) {
runID++;
//(begin)***************************************************************
// the following codes are used only when in the simulation
// the index of projection, slice and pixel is not
// correctly configured
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
//(end)******************************************************************
if (runInfo.projectionIndex == P_interrupt) {
runID--;
break;
}
int nbParticle = runInfo.nbParticle;
std::vector<ParticleInfo> gammaAtCreation(nbParticle);
fread(&gammaAtCreation[0], sizeof(ParticleInfo), nbParticle, input1);
// if(runInfo.sliceIndex!=1) continue;
// if(runInfo.sliceIndex!=31&&runInfo.sliceIndex!=32) continue;
// if(runInfo.sliceIndex!=31) continue;
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf("-1--runId %d, ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means the angle between
// source direction and detector, which should be constant when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// gamma selection: energy should be lower than 4095*10eV = 49.45 keV
if (gammaAtCreation[i].energy_keV >= 40.95 || gammaAtCreation[i].energy_keV <= 0.9)
continue; // gamma selection
gammaMomentum.m_x = gammaAtCreation[i].mx;
gammaMomentum.m_y = gammaAtCreation[i].my;
gammaMomentum.m_z = gammaAtCreation[i].mz;
if (!IsDetected(centerOfDetector, gammaMomentum, theta))
continue;
else {
pixeEvent.energy_10eV = floor(100 * gammaAtCreation[i].energy_keV + 0.5);
pixeEvent.projectionIndex = runInfo.projectionIndex;
pixeEvent.sliceIndex = runInfo.sliceIndex;
pixeEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&pixeEvent, 7, 1, out);
count1++;
}
}
}
printf("---------------Number of PixeEvent in the first file: %lld------------------------\n",
count1);
fclose(input1);
// ************************************************************
// **********************READ FIRST FILE (end)*****************
// ************************************************************
// ************************************************************
// **********************READ SECOND FILE (begin)**************
// ************************************************************
while (fread(&runInfo, sizeof(RunInfo), 1, input2)) {
runID++;
//(begin)***************************************************************
// the following codes are used only when in the simulation
// the index of projection, slice and pixel is not
// correctly configured
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
//(end)******************************************************************
int nbParticle = runInfo.nbParticle;
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf("-2--runId %d, ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
if (!nbParticle) continue;
std::vector<ParticleInfo> gammaAtCreation(nbParticle);
fread(&gammaAtCreation[0], sizeof(ParticleInfo), nbParticle, input2);
// if(runInfo.sliceIndex!=1) continue;
// if(runInfo.sliceIndex!=31) continue;
// if(runInfo.sliceIndex!=31&&runInfo.sliceIndex!=32) continue;
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means the angle between
// source direction and detector, which should be constant when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// gamma selection: energy should be lower than 4095*10eV = 49.45 keV
if (gammaAtCreation[i].energy_keV >= 40.95 || gammaAtCreation[i].energy_keV <= 0.9)
continue; // gamma selection
gammaMomentum.m_x = gammaAtCreation[i].mx;
gammaMomentum.m_y = gammaAtCreation[i].my;
gammaMomentum.m_z = gammaAtCreation[i].mz;
if (!IsDetected(centerOfDetector, gammaMomentum, theta))
continue;
else {
pixeEvent.energy_10eV = floor(100 * gammaAtCreation[i].energy_keV + 0.5);
pixeEvent.projectionIndex = runInfo.projectionIndex;
pixeEvent.sliceIndex = runInfo.sliceIndex;
pixeEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&pixeEvent, 7, 1, out);
count2++;
}
}
}
printf("---------------Number of PixeEvent in in the second file: %lld------------------------\n",
count2);
// ************************************************************
// **********************READ SECOND FILE (end)****************
// ************************************************************
printf("---------------Number of PixeEvent in total: %lld------------------------\n",
count1 + count2);
fclose(input2);
fclose(out);
// Recheck the output file in case
// FILE* input2 = fopen("PixeEvent_std_AtCreation.DAT","rb");
// PixeEvent p;
// while(fread(&p, 7, 1, input2))
// {
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_10eV=%d\n",
// p.projectionIndex, p.sliceIndex, p.pixelIndex, p.energy_10eV);
// }
// fclose(input2);
}
examples/advanced/stim_pixe_tomography/Scripts/Concatenate_BinToStd_GammaAtCreation_fabricate.C
+226
View File
@@ -0,0 +1,226 @@
//***********************************************************************************************************
// Concatenate_BinToStd_GammaAtCreation_fabricate.C
// Root command file
// Use it by typing in the command line of Root terminal: root
// Concatenate_BinToStd_GammaAtCreation_fabricate.C
//
//
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
#define PI 3.14159265f
// Define a structure to read and write each event in the required binary format
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
double DegreeToRadian(double degree)
{
return (PI * degree / 180.);
}
struct Point
{
double m_x;
double m_y;
double m_z;
};
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else
return true;
}
void Concatenate_BinToStd_GammaAtCreation_fabricate()
{
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 100;
const int nbSlice = 1;
const int nbPixel = 128;
double totalAngleSpan = 180.; // in degree
double angleOfDetector =
135.; // angle of detector relative to the incident direction of the primary protons //
double distanceObjectDetector = 22.; // 22 mm
double radiusOfDetector = 5.; // 5 mm
// double theta = atan(radiusOfDetector/distanceObjectDetector); //half apex angle of the right
// circular cone in radian double theta = 14.726*TMath::DegToRad(); // in radian
double theta = 70 * TMath::DegToRad(); // in radian
// double theta = 70*TMath::DegToRad(); // in radian
// double theta = DegreeToRadian(70);
int P_interrupt = 1; // Projection of interruption
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
// assuming there is one interruption
FILE* input1 = fopen("../RT7_GDP_1Projs_1Slice_128Pixels_2000000_4MeV/GammaAtCreation.dat", "rb");
FILE* out =
fopen("../RT7_GDP_1Projs_1Slice_128Pixels_2000000_4MeV/PixeEvent_std_AtCreation.DAT", "wb");
// FILE* temp;
// temp =fopen("temp.DAT","wb");
if (input1 == NULL) {
printf("error for opening the input GammaAtCreation.dat file\n");
return;
}
RunInfo runInfo;
PixeEvent pixeEvent;
Point centerOfDetector;
Point gammaMomentum;
long long count1 = 0;
long long count2 = 0;
int runID = -1; // index of simulations, namely runID, starting from 0
std::vector<PixeEvent> eventVec;
// ************************************************************(begin)
// **********************READ FIRST FILE***********************
// ************************************************************
while (fread(&runInfo, sizeof(RunInfo), 1, input1)) {
runID++;
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
if (runInfo.projectionIndex == P_interrupt) {
runID--;
break;
}
int nbParticle = runInfo.nbParticle;
std::vector<ParticleInfo> gammaAtCreation(nbParticle);
fread(&gammaAtCreation[0], sizeof(ParticleInfo), nbParticle, input1);
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
// printf("-1--runId %d, ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle =
// %d\n",runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means the angle between
// source direction and detector, which should be constant when source is rotating
double ra =
DegreeToRadian(angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// gamma selection: energy should be lower than 4095*10eV = 49.45 keV
if (gammaAtCreation[i].energy_keV >= 40.95 || gammaAtCreation[i].energy_keV <= 0.9)
continue; // gamma selection
gammaMomentum.m_x = gammaAtCreation[i].mx;
gammaMomentum.m_y = gammaAtCreation[i].my;
gammaMomentum.m_z = gammaAtCreation[i].mz;
if (!IsDetected(centerOfDetector, gammaMomentum, theta))
continue;
else {
pixeEvent.energy_10eV = floor(100 * gammaAtCreation[i].energy_keV + 0.5);
pixeEvent.projectionIndex = runInfo.projectionIndex;
pixeEvent.sliceIndex = runInfo.sliceIndex;
pixeEvent.pixelIndex = runInfo.pixelIndex;
eventVec.push_back(pixeEvent);
// fwrite(&pixeEvent, 7, 1, temp);
// fwrite(&pixeEvent, 7, 1, out);
count1++;
}
}
}
printf("---------------Number of PixeEvent in the first file: %lld------------------------\n",
count1);
fclose(input1);
// fclose(temp);
// ************************************************************(end)
// **********************READ FIRST FILE***********************
// ************************************************************
PixeEvent pp;
PixeEvent p;
for (int i = 0; i < nbProjection; ++i) {
int size = eventVec.size();
for (int j = 0; j < size; ++j) {
p = eventVec[j];
pp.energy_10eV = p.energy_10eV;
pp.projectionIndex = p.projectionIndex + i;
pp.sliceIndex = p.sliceIndex; // index of slices should be reset, starting from 0
pp.pixelIndex = p.pixelIndex;
pp.pixelIndex = p.pixelIndex;
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_10eV=%d\n",
// pp.projectionIndex, pp.sliceIndex, pp.pixelIndex, pp.energy_10eV);
fwrite(&pp, 7, 1, out);
}
}
// fclose(temp);
fclose(out);
// Recheck the output file in case
FILE* input2 =
fopen("../RT7_GDP_1Projs_1Slice_128Pixels_2000000_4MeV/PixeEvent_std_AtCreation.DAT", "rb");
PixeEvent ppp;
int proj = -1;
while (fread(&ppp, 7, 1, input2)) {
if (ppp.projectionIndex != proj) {
printf("__ProjectionIndex=%d\n", ppp.projectionIndex);
proj = ppp.projectionIndex;
}
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_10eV=%d\n",
// ppp.projectionIndex, ppp.sliceIndex, ppp.pixelIndex, ppp.energy_10eV);
}
fclose(input2);
}
examples/advanced/stim_pixe_tomography/Scripts/Concatenate_BinToStd_GammaAtExit.C
+270
View File
@@ -0,0 +1,270 @@
//***********************************************************************************************************
// Concatenate_BinToStd_GammaAtExit.C
// Root command file
// Type: root Concatenate_BinToStd_GammaAtExit.C
//
// It is used in case of one interruption
// Read 2 output files GammaAtExit_1.dat and GammaAtExit_2.dat that are generated by Geant4
// tomography simulation It reads gamma at exit information, and rewrite the events in a binary file
// PixeEvent_std_AtExit.DAT
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
// Define a structure to read and write each event in the required binary format
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
struct Point
{
double m_x;
double m_y;
double m_z;
};
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else
return true;
}
void Concatenate_BinToStd_GammaAtExit()
{
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 1;
const int nbPixel = 20;
double totalAngleSpan = 180.; // in degree
double angleOfDetector =
135.; // angle of detector relative to the incident direction of the primary protons //
double distanceObjectDetector = 22.; // 22 mm
double radiusOfDetector = 5.; // 5 mm
// double theta = atan(radiusOfDetector/distanceObjectDetector); //half apex angle of the right
// circular cone in radian
double theta = 70 * TMath::DegToRad(); // in radian
int P_interrupt = 6; // Projection of interruption
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
// assuming there is one interruption
FILE* input1 = fopen("../build/GammaAtExit_1.dat", "rb");
FILE* input2 = fopen("../build/GammaAtExit_2.dat", "rb");
FILE* out = fopen("../build/PixeEvent_std_AtExit.DAT", "wb");
if (input1 == NULL) {
printf("error for opening the input GammaAtExit_1.dat file\n");
return;
}
if (input2 == NULL) {
printf("error for opening the input GammaAtExit_2.dat file\n");
return;
}
RunInfo runInfo;
PixeEvent pixeEvent;
Point centerOfDetector;
Point gammaMomentum;
long long count1 = 0;
long long count2 = 0;
int runID = -1; // index of simulations, namely runID, starting from 0
// ************************************************************
// **********************READ FIRST FILE (begin)***************
// ************************************************************
while (fread(&runInfo, sizeof(RunInfo), 1, input1)) {
runID++;
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
if (runInfo.projectionIndex == P_interrupt) {
runID--;
break;
}
int nbParticle = runInfo.nbParticle;
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf("-1--runId %d, ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
if (!nbParticle) continue;
std::vector<ParticleInfo> gammaAtExit(nbParticle);
fread(&gammaAtExit[0], sizeof(ParticleInfo), nbParticle, input1);
// if(runInfo.sliceIndex!=1) continue;
// if(runInfo.sliceIndex!=31&&runInfo.sliceIndex!=32) continue;
// if(runInfo.sliceIndex!=31) continue;
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means the angle between
// source direction and detector, which should be constant when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// gamma selection: energy should be lower than 4095*10eV = 49.45 keV
if (gammaAtExit[i].energy_keV >= 40.95 || gammaAtExit[i].energy_keV <= 0.9)
continue; // gamma selection
gammaMomentum.m_x = gammaAtExit[i].mx;
gammaMomentum.m_y = gammaAtExit[i].my;
gammaMomentum.m_z = gammaAtExit[i].mz;
if (!IsDetected(centerOfDetector, gammaMomentum, theta))
continue;
else {
pixeEvent.energy_10eV = floor(100 * gammaAtExit[i].energy_keV + 0.5);
pixeEvent.projectionIndex = runInfo.projectionIndex;
pixeEvent.sliceIndex = runInfo.sliceIndex;
pixeEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&pixeEvent, 7, 1, out);
count1++;
}
}
}
printf("---------------Number of PixeEvent in the first file: %lld------------------------\n",
count1);
fclose(input1);
// ************************************************************
// **********************READ FIRST FILE (end)*****************
// ************************************************************
// ************************************************************
// **********************READ SECOND FILE (begin)**************
// ************************************************************
while (fread(&runInfo, sizeof(RunInfo), 1, input2)) {
runID++;
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
int nbParticle = runInfo.nbParticle;
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf("-2--runId %d, ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
if (!nbParticle) continue;
std::vector<ParticleInfo> gammaAtExit(nbParticle);
fread(&gammaAtExit[0], sizeof(ParticleInfo), nbParticle, input2);
// if(runInfo.sliceIndex!=1) continue;
// if(runInfo.sliceIndex!=31&&runInfo.sliceIndex!=32) continue;
// if(runInfo.sliceIndex!=31) continue;
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means the angle between
// source direction and detector, which should be constant when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// gamma selection: energy should be lower than 4095*10eV = 49.45 keV
if (gammaAtExit[i].energy_keV >= 40.95 || gammaAtExit[i].energy_keV <= 0.9)
continue; // gamma selection
gammaMomentum.m_x = gammaAtExit[i].mx;
gammaMomentum.m_y = gammaAtExit[i].my;
gammaMomentum.m_z = gammaAtExit[i].mz;
if (!IsDetected(centerOfDetector, gammaMomentum, theta))
continue;
else {
pixeEvent.energy_10eV = floor(100 * gammaAtExit[i].energy_keV + 0.5);
pixeEvent.projectionIndex = runInfo.projectionIndex;
pixeEvent.sliceIndex = runInfo.sliceIndex;
pixeEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&pixeEvent, 7, 1, out);
count2++;
}
}
}
printf("---------------Number of PixeEvent in in the second file: %lld------------------------\n",
count2);
// ************************************************************
// **********************READ SECOND FILE (end)****************
// ************************************************************
printf("---------------Number of PixeEvent in total: %lld------------------------\n",
count1 + count2);
fclose(input2);
fclose(out);
// Recheck the output file in case
// FILE* input2 = fopen("PixeEvent_std_AtExit.DAT","rb");
// PixeEvent p;
// while(fread(&p, 7, 1, input2))
// {
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_10eV=%d\n",
// p.projectionIndex, p.sliceIndex, p.pixelIndex, p.energy_10eV);
// }
// fclose(input2);
}
examples/advanced/stim_pixe_tomography/Scripts/Concatenate_BinToStd_GammaAtExit_fabricate.C
+232
View File
@@ -0,0 +1,232 @@
//***********************************************************************************************************
// Concatenate_BinToStd_GammaAtExit_fabricate.C
// Root command file
// Use it by typing in the command line of Root terminal: root
// Concatenate_BinToStd_GammaAtExit_fabricate.C
//
//
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
#define PI 3.14159265f
// Define a structure to read and write each event in the required binary format
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
double DegreeToRadian(double degree)
{
return (PI * degree / 180.);
}
struct Point
{
double m_x;
double m_y;
double m_z;
};
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else
return true;
}
void Concatenate_BinToStd_GammaAtExit_fabricate()
{
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 100;
const int nbSlice = 1;
const int nbPixel = 128;
double totalAngleSpan = 180.; // in degree
double angleOfDetector =
135.; // angle of detector relative to the incident direction of the primary protons //
double distanceObjectDetector = 22.; // 22 mm
double radiusOfDetector = 5.; // 5 mm
// double theta = atan(radiusOfDetector/distanceObjectDetector); //half apex angle of the right
// circular cone in radian double theta = 14.726*TMath::DegToRad(); // in radian
double theta = 70 * TMath::DegToRad(); // in radian
// double theta = 70*TMath::DegToRad(); // in radian
// double theta = DegreeToRadian(70);
int P_interrupt = 1; // Projection of interruption
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
// assuming there is one interruption
FILE* input1 = fopen("../RT7_GDP_1Projs_1Slice_128Pixels_2000000_4MeV/GammaAtExit.dat", "rb");
FILE* out =
fopen("../RT7_GDP_1Projs_1Slice_128Pixels_2000000_4MeV/PixeEvent_std_AtExit.DAT", "wb");
// FILE* temp;
// temp =fopen("temp.DAT","wb");
if (input1 == NULL) {
printf("error for opening the input GammaAtExit.dat file\n");
return;
}
RunInfo runInfo;
PixeEvent pixeEvent;
Point centerOfDetector;
Point gammaMomentum;
long long count1 = 0;
long long count2 = 0;
int runID = -1; // index of simulations, namely runID, starting from 0
std::vector<PixeEvent> eventVec;
// ************************************************************(begin)
// **********************READ FIRST FILE***********************
// ************************************************************
while (fread(&runInfo, sizeof(RunInfo), 1, input1)) {
runID++;
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
if (runInfo.projectionIndex == P_interrupt) {
runID--;
break;
}
int nbParticle = runInfo.nbParticle;
std::vector<ParticleInfo> gammaAtExit(nbParticle);
fread(&gammaAtExit[0], sizeof(ParticleInfo), nbParticle, input1);
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf("-1--runId %d, ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means the angle between
// source direction and detector, which should be constant when source is rotating
double ra =
DegreeToRadian(angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// gamma selection: energy should be lower than 4095*10eV = 49.45 keV
if (gammaAtExit[i].energy_keV >= 40.95 || gammaAtExit[i].energy_keV <= 0.9)
continue; // gamma selection
gammaMomentum.m_x = gammaAtExit[i].mx;
gammaMomentum.m_y = gammaAtExit[i].my;
gammaMomentum.m_z = gammaAtExit[i].mz;
if (!IsDetected(centerOfDetector, gammaMomentum, theta))
continue;
else {
pixeEvent.energy_10eV = floor(100 * gammaAtExit[i].energy_keV + 0.5);
pixeEvent.projectionIndex = runInfo.projectionIndex;
pixeEvent.sliceIndex = runInfo.sliceIndex;
pixeEvent.pixelIndex = runInfo.pixelIndex;
eventVec.push_back(pixeEvent);
count1++;
}
}
}
printf("---------------Number of PixeEvent in the first file: %lld------------------------\n",
count1);
fclose(input1);
// fclose(temp);
// ************************************************************(end)
// **********************READ FIRST FILE***********************
// ************************************************************
// ************************************************************(begin)
// **********************READ SECOND FILE**********************
// ************************************************************
// temp =fopen("temp.DAT","rb");
PixeEvent pp;
PixeEvent p;
for (int i = 0; i < nbProjection; ++i) {
int size = eventVec.size();
for (int j = 0; j < size; ++j) {
p = eventVec[j];
pp.energy_10eV = p.energy_10eV;
pp.projectionIndex = p.projectionIndex + i;
pp.sliceIndex = p.sliceIndex; // index of slices should be reset, starting from 0
pp.pixelIndex = p.pixelIndex;
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_10eV=%d\n",
// pp.projectionIndex, pp.sliceIndex, pp.pixelIndex, pp.energy_10eV);
fwrite(&pp, 7, 1, out);
}
}
// ************************************************************(end)
// **********************READ SECOND FILE**********************
// ************************************************************
// fclose(temp);
fclose(out);
// Recheck the output file in case
FILE* input2 =
fopen("../RT7_GDP_1Projs_1Slice_128Pixels_2000000_4MeV/PixeEvent_std_AtExit.DAT", "rb");
PixeEvent ppp;
int proj = -1;
while (fread(&ppp, 7, 1, input2)) {
if (ppp.projectionIndex != proj) {
printf("__ProjectionIndex=%d\n", ppp.projectionIndex);
proj = ppp.projectionIndex;
}
// if(proj<20) printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_10eV=%d\n",
// ppp.projectionIndex, ppp.sliceIndex, ppp.pixelIndex, ppp.energy_10eV);
}
fclose(input2);
}
examples/advanced/stim_pixe_tomography/Scripts/Concatenate_BinToStd_ProtonAtExit.C
+276
View File
@@ -0,0 +1,276 @@
//***********************************************************************************************************
// Concatenate_BinToStd_ProtonAtExit.C
// Root command file
// Type: root Concatenate_BinToStd_ProtonAtExit.C
//
// It is used in case of interruption
// Read 2 output files ProtonAtExit_1.dat and ProtonAtExit_2.dat that are generated by Geant4
// tomography simulation It reads protons at exit information, and rewrite the events in a binary
// file StimEvent_std.DAT
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
// Define a structure to read and write each event in the required binary format
struct StimEvent
{
uint16_t energy_keV; // different from Pixe Event, it is in keV
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
struct Point
{
double m_x;
double m_y;
double m_z;
};
bool IsDetected(Point poi1, Point poi2, double theta)
{
double a = (poi1.m_x * poi2.m_x + poi1.m_y * poi2.m_y + poi1.m_z * poi2.m_z)
/ sqrt(poi1.m_x * poi1.m_x + poi1.m_y * poi1.m_y + poi1.m_z * poi1.m_z)
/ sqrt(poi2.m_x * poi2.m_x + poi2.m_y * poi2.m_y + poi2.m_z * poi2.m_z);
if (a > 1.0) a = 1;
if (a < -1.0) a = -1;
double r = acos(a);
if (r > theta)
return false;
else
return true;
}
void Recheck()
{
// Recheck the output file in case
FILE* input3 = fopen("../build/StimEvent_std_Detector0_Aperture10.2.DAT", "rb");
StimEvent p;
double eventId = -1;
while (fread(&p, 7, 1, input3)) {
if (p.projectionIndex == 8 && p.sliceIndex == 64 && p.pixelIndex == 10) {
eventId++;
printf("StimEvent_%.0f ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_keV=%d keV\n",
eventId, p.projectionIndex, p.sliceIndex, p.pixelIndex, p.energy_keV);
}
}
fclose(input3);
}
void Concatenate_BinToStd_ProtonAtExit()
{
// Recheck();
// return;
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 128;
const int nbPixel = 20;
double totalAngleSpan = 180.; // in degree
// angle of detector relative to the incident direction of the primary protons at first projection
// for proton, it is fixed to 0 degree, namely opposite to the source
double angleOfDetector = 0.;
double distanceObjectDetector = 22.; // 22 mm
double radiusOfDetector = 5.; // 5 mm
// double theta = atan(radiusOfDetector/distanceObjectDetector); //half apex angle of the right
// circular cone in radian
double theta = 10.2 * TMath::DegToRad(); // in radian
int P_interrupt = 2; // Projection of interruption
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
// assuming there is one interruption
FILE* input1 = fopen("../build/ProtonAtExit_1.dat", "rb");
FILE* input2 = fopen("../build/ProtonAtExit_2.dat", "rb");
FILE* out = fopen("../build/StimEvent_std.DAT", "wb");
if (input1 == NULL) {
printf("error for opening the input ProtonAtExit_1.dat file\n");
return;
}
if (input2 == NULL) {
printf("error for opening the input ProtonAtExit_2.dat file\n");
return;
}
RunInfo runInfo;
StimEvent stimEvent;
Point centerOfDetector;
Point protonMomentum;
long long count1 = 0;
long long count2 = 0;
int runID = -1; // index of simulations, namely runID, starting from 0
// ************************************************************(begin)
// **********************READ FIRST FILE***********************
// ************************************************************
while (fread(&runInfo, sizeof(RunInfo), 1, input1)) {
runID++;
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
if (runInfo.projectionIndex == P_interrupt) {
runID--;
break;
}
int nbParticle = runInfo.nbParticle;
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf("-1--runId %d, ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
if (!nbParticle) continue;
std::vector<ParticleInfo> protonAtExit(nbParticle);
fread(&protonAtExit[0], sizeof(ParticleInfo), nbParticle, input1);
// if(runInfo.sliceIndex!=1) continue;
// if(runInfo.sliceIndex!=31&&runInfo.sliceIndex!=32) continue;
// if(runInfo.sliceIndex!=31) continue;
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means the angle between
// source direction and detector, which should be constant when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// proton selection: energy should be lower than 4095 keV
if (protonAtExit[i].energy_keV >= 4095) continue; // proton selection
protonMomentum.m_x = protonAtExit[i].mx;
protonMomentum.m_y = protonAtExit[i].my;
protonMomentum.m_z = protonAtExit[i].mz;
if (!IsDetected(centerOfDetector, protonMomentum, theta))
continue;
else {
stimEvent.energy_keV = floor(protonAtExit[i].energy_keV + 0.5);
stimEvent.projectionIndex = runInfo.projectionIndex;
stimEvent.sliceIndex = runInfo.sliceIndex;
stimEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&stimEvent, 7, 1, out);
count1++;
}
}
}
printf("---------------Number of StimEvent in the first file: %lld------------------------\n",
count1);
fclose(input1);
// ************************************************************
// **********************READ FIRST FILE (end)*****************
// ************************************************************
// ************************************************************
// **********************READ SECOND FILE (begin)**************
// ************************************************************
while (fread(&runInfo, sizeof(RunInfo), 1, input2)) {
runID++;
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
int nbParticle = runInfo.nbParticle;
//***********************************************************************
//**************************Print information (begin)********************
//***********************************************************************
printf("-2--runId %d, ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle = %d\n",
runID, runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
//***********************************************************************
//**************************Print information (end)**********************
//***********************************************************************
if (!nbParticle) continue;
std::vector<ParticleInfo> protonAtExit(nbParticle);
fread(&protonAtExit[0], sizeof(ParticleInfo), nbParticle, input2);
// if(runInfo.sliceIndex!=1) continue;
// if(runInfo.sliceIndex!=31) continue;
// if(runInfo.sliceIndex!=31&&runInfo.sliceIndex!=32) continue;
// angleOfDetector+totalAngleSpan/nbProjection*runInfo.projectionIndex means the angle between
// source direction and detector, which should be constant when source is rotating
double ra = TMath::DegToRad()
* (angleOfDetector + totalAngleSpan / nbProjection * runInfo.projectionIndex);
centerOfDetector.m_x = distanceObjectDetector * cos(ra);
centerOfDetector.m_y = distanceObjectDetector * sin(ra);
centerOfDetector.m_z = 0;
for (int i = 0; i < nbParticle; ++i) {
// proton selection: energy should be lower than 4095 keV
if (protonAtExit[i].energy_keV >= 4095) continue; // proton selection
protonMomentum.m_x = protonAtExit[i].mx;
protonMomentum.m_y = protonAtExit[i].my;
protonMomentum.m_z = protonAtExit[i].mz;
if (!IsDetected(centerOfDetector, protonMomentum, theta))
continue;
else {
stimEvent.energy_keV = floor(protonAtExit[i].energy_keV + 0.5);
stimEvent.projectionIndex = runInfo.projectionIndex;
stimEvent.sliceIndex = runInfo.sliceIndex;
stimEvent.pixelIndex = runInfo.pixelIndex;
fwrite(&stimEvent, 7, 1, out);
count2++;
}
}
}
printf("---------------Number of StimEvent in in the second file: %lld------------------------\n",
count2);
// ************************************************************
// **********************READ SECOND FILE (end)****************
// ************************************************************
printf("---------------Number of StimEvent in total: %lld------------------------\n",
count1 + count2);
fclose(input2);
fclose(out);
}
examples/advanced/stim_pixe_tomography/Scripts/Extract_Projection.C
+70
View File
@@ -0,0 +1,70 @@
//***********************************************************************************************************
// Extract_Slice.C
// Root command file
// Use it by typing in the command line of Root terminal: root Extract_Slice.C
//
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
#define PI 3.14159265f
// Define a structure to read and write each event in the required binary format
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
// to extract a certain slice or slices
void Extract_Projection()
{
// FILE *in =fopen("PixeEvent_std_AtCreation.DAT","rb");
FILE* in = fopen("../build/PixeEvent_std_AtExit_Detector135_Aperture70.DAT", "rb");
// FILE* out = fopen("PixeEvent_std_AtCreation_50Projections.DAT","wb");
FILE* out = fopen("../build/PixeEvent_std_AtExit_Detector135_Aperture70_50Projections.DAT", "wb");
if (in == NULL) {
printf("error for opening the intput file\n");
return;
}
PixeEvent p;
PixeEvent pp;
vector<int> valid_projections;
for (int i = 0; i < 50; ++i) {
int p = 2 * i;
valid_projections.push_back(p);
}
while (fread(&p, 7, 1, in)) {
int key = p.projectionIndex;
if (std::find(valid_projections.begin(), valid_projections.end(), key)
!= valid_projections.end()) {
pp.energy_10eV = p.energy_10eV;
pp.projectionIndex = p.projectionIndex / 2;
pp.sliceIndex = p.sliceIndex; // index of slices should be reset, starting from 0
pp.pixelIndex = p.pixelIndex;
pp.pixelIndex = p.pixelIndex;
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_10eV=%d\n",
// pp.projectionIndex, pp.sliceIndex, pp.pixelIndex, pp.energy_10eV);
fwrite(&pp, 7, 1, out);
}
}
fclose(in);
fclose(out);
}
examples/advanced/stim_pixe_tomography/Scripts/Extract_Slice.C
+66
View File
@@ -0,0 +1,66 @@
//***********************************************************************************************************
// Extract_Slice.C
// Root command file
// Use it by typing in the command line of Root terminal: root Extract_Slice.C
//
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
#define PI 3.14159265f
// Define a structure to read and write each event in the required binary format
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
// to extract a certain slice or slices
void Extract_Slice()
{
int start_slice = 0; // start_slice: the first slice you would like to select
int end_slice = 0; // end_slice: the last slice you would like to select
FILE* in = fopen("../build/PixeEvent_std_AtCreation.DAT", "rb");
// FILE *in =fopen("PixeEvent_std_AtExit.DAT.DAT","rb");
FILE* out = fopen("../build/PixeEvent_std_AtCreation_slice.DAT", "wb");
// FILE* out = fopen("PixeEvent_std_AtExit_slice.DAT","wb");
if (in == NULL) {
printf("error for opening the intput file\n");
return;
}
PixeEvent p;
PixeEvent pp;
while (fread(&p, 7, 1, in)) {
if (p.sliceIndex >= start_slice && p.sliceIndex <= end_slice) {
pp.energy_10eV = p.energy_10eV;
pp.projectionIndex = p.projectionIndex;
pp.sliceIndex =
p.sliceIndex - start_slice; // index of slices should be reset, starting from 0
pp.pixelIndex = p.pixelIndex;
pp.pixelIndex = p.pixelIndex;
// printf("__ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, Energy_10eV=%d\n",
// pp.projectionIndex, pp.sliceIndex, pp.pixelIndex, pp.energy_10eV);
fwrite(&pp, 7, 1, out);
}
}
fclose(in);
fclose(out);
}
examples/advanced/stim_pixe_tomography/Scripts/LocateInterruption_GammaAtExit.C
+93
View File
@@ -0,0 +1,93 @@
//***********************************************************************************************************
// LocateInterruption_GammaAtExit.C
// Root command file
// Type: root LocateInterruption_GammaAtExit.C
//
// It is used by reading GammaAtExit.dat file to locate at which projection the interruption happens
//
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
// struct ParticleInfo
// {
// float energy_keV;
// float mx;
// float my;
// float mz;
// float x;
// float y;
// float z;
// };
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
void LocateInterruption_GammaAtExit()
{
FILE* input = fopen("../build/GammaAtExit_1.dat", "rb");
if (input == NULL) {
printf("error for opening the input file\n");
return;
}
RunInfo runInfo;
int projection = 0; // the projection when interruption occurs
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 1;
const int nbPixel = 20;
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
int runID = -1;
while (fread(&runInfo, sizeof(RunInfo), 1, input)) {
runID++;
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
int nbParticle = runInfo.nbParticle;
std::vector<ParticleInfo> gammaAtExit(nbParticle);
fread(&gammaAtExit[0], sizeof(ParticleInfo), nbParticle, input);
printf("---------ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle = %d\n",
runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
projection = runInfo.projectionIndex;
}
printf("-----------------------It is interrupted at ProjectionIndex = %d--------------------\n",
projection);
fclose(input);
}
examples/advanced/stim_pixe_tomography/Scripts/LocateInterruption_ProtonAtExit.C
+93
View File
@@ -0,0 +1,93 @@
//***********************************************************************************************************
// LocateInterruption_ProtonAtExit.C
// Root command file
// Type: root LocateInterruption_ProtonAtExit.C
//
// It is used by reading ProtonAtExit.dat file to locate at which projection the interruption is
//
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
// struct ParticleInfo
// {
// float energy_keV;
// float mx;
// float my;
// float mz;
// float x;
// float y;
// float z;
// };
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
void LocateInterruption_ProtonAtExit()
{
FILE* input = fopen("../build/ProtonAtExit_1.dat", "rb");
if (input == NULL) {
printf("error for opening the input file\n");
return;
}
RunInfo runInfo;
int projection = 0; // the projection when interruption occurs
//***********************************************************************
//**************************Detection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 128;
const int nbPixel = 20;
//***********************************************************************
//**************************Detection parameters (end)*******************
//***********************************************************************
int runID = -1;
while (fread(&runInfo, sizeof(RunInfo), 1, input)) {
runID++;
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
int nbParticle = runInfo.nbParticle;
std::vector<ParticleInfo> protonAtExit(nbParticle);
fread(&protonAtExit[0], sizeof(ParticleInfo), nbParticle, input);
printf("---------ProjectionIndex=%d, SliceIndex=%d, PixelIndex=%d, nbParticle = %d\n",
runInfo.projectionIndex, runInfo.sliceIndex, runInfo.pixelIndex, nbParticle);
projection = runInfo.projectionIndex;
}
printf("-----------------------It is interrupted at ProjectionIndex = %d--------------------\n",
projection);
fclose(input);
}
examples/advanced/stim_pixe_tomography/Scripts/Spectrum_gamma.C
+143
View File
@@ -0,0 +1,143 @@
//***********************************************************************************************************
// Spectrum_gamma.C
// Root command file
// Type: root Spectrum_gamma.C
//
// It visualizes the spectrum of X-rays and plots a histogram by reading
// simulation result GammaAtCreation.dat or GammaAtExit.dat
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
// Define a structure to read and write each event in the required binary format
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
// struct ParticleInfo
//{
// float energy_keV;
// float mx;
// float my;
// float mz;
// float x;
// float y;
// float z;
//};
void Plot(vector<double>& energies, int bin, double eMin, double eMax)
{
auto mycanvas = new TCanvas("canvas", "canvas", 800, 50, 600, 600);
gPad->SetLeftMargin(0.15);
// unit is in keV
auto hist = new TH1D("hist (keV)", "Spectrum of photons", bin, eMin, eMax);
for (int i = 0; i < energies.size(); ++i) {
hist->Fill(energies[i]);
}
hist->Draw();
hist->GetXaxis()->SetTitle("Energy (keV)");
hist->GetYaxis()->SetTitle("Counts");
hist->GetXaxis()->CenterTitle();
hist->GetYaxis()->CenterTitle();
mycanvas->Print("spectrum_gamma.png");
}
void Spectrum_gamma()
{
FILE* input = fopen("../build/GammaAtExit.dat", "rb");
if (input == NULL) {
printf("error for opening the input file\n");
return;
}
//***********************************************************************
//**************************Selection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 1;
const int nbPixel = 20;
int projection_index_begin = 0; // starter of the projection selected
int projection_index_end = 0; // end of the projection selected
int slice_index_begin = 0; // starter of the slice selected
int slice_index_end = 0; // end of the slice selected
//********************Parameters for spectrum***************************
int bin = 100;
double eMin = 0; // keV
double eMax = 0; // keV
//***********************************************************************
//**************************Selection parameters (end)*******************
//***********************************************************************
RunInfo runInfo;
vector<double> energies;
int runID = -1; // index of simulations, namely runID, starting from 0
// while(!feof(input)) //if not the end, read
while (fread(&runInfo, sizeof(RunInfo), 1, input)) {
runID++;
int nbParticle = runInfo.nbParticle;
// ***********the following codes are used
// if**************************************(begin)
// ***********the index of projection, slice and pixel is not correctly
// configured in the simulation
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
//************************************************************************(end)
if (!nbParticle) continue;
std::vector<ParticleInfo> particles(nbParticle);
fread(&particles[0], sizeof(ParticleInfo), nbParticle, input);
if (runInfo.projectionIndex >= projection_index_begin
&& runInfo.projectionIndex <= projection_index_end)
{
if (runInfo.sliceIndex >= slice_index_begin && runInfo.sliceIndex <= slice_index_end) {
for (int i = 0; i < nbParticle; ++i) {
// printf("--%d, %.9e\n", i, particles[i].energy_keV);
energies.push_back(particles[i].energy_keV);
if (particles[i].energy_keV > eMax) eMax = particles[i].energy_keV;
}
}
}
else
break;
}
fclose(input);
Plot(energies, bin, eMin, eMax + 10);
}
examples/advanced/stim_pixe_tomography/Scripts/Spectrum_proton.C
+129
View File
@@ -0,0 +1,129 @@
//***********************************************************************************************************
// Spectrum_proton.C
// Root command file
// Type: root Spectrum_proton.C
//
// It visualizes the spectrum of protons and plots a histogram by reading
// simulation result ProtonAtExit.dat
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
// Define a structure to read and write each event in the required binary format
struct RunInfo
{
// uint_16t
uint8_t projectionIndex; // 1 byte
uint16_t sliceIndex; //
uint16_t pixelIndex;
uint32_t nbParticle; // 4 bytes int
};
struct ParticleInfo
{
float energy_keV;
float mx;
float my;
float mz;
};
void Plot(vector<double>& energies, int bin, double eMin, double eMax)
{
auto mycanvas = new TCanvas("canvas", "canvas", 800, 50, 600, 600);
gPad->SetLeftMargin(0.15);
// unit is in keV
auto hist = new TH1D("hist (keV)", "Spectrum of protons", bin, eMin, eMax);
for (int i = 0; i < energies.size(); ++i) {
hist->Fill(energies[i]);
}
hist->Draw();
hist->GetXaxis()->SetTitle("Energy (keV)");
hist->GetYaxis()->SetTitle("Counts");
hist->GetXaxis()->CenterTitle();
hist->GetYaxis()->CenterTitle();
mycanvas->Print("spectrum_proton.png");
}
void Spectrum_proton()
{
FILE* input = fopen("../build/ProtonAtExit.dat", "rb");
if (input == NULL) {
printf("error for opening the input file\n");
return;
}
//***********************************************************************
//**************************Selection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 128;
const int nbPixel = 20;
int projection_index_begin = 0; // starter of the projection selected
int projection_index_end = 0; // end of the projection selected
int slice_index_begin = 64; // starter of the slice selected
int slice_index_end = 64; // end of the slice selected
//********************Parameters for spectrum***************************
int bin = 100;
double eMin = 0; // keV
double eMax = 0; // keV
//***********************************************************************
//**************************Selection parameters (end)*******************
//***********************************************************************
RunInfo runInfo;
vector<double> energies;
int runID = -1; // index of simulations, namely runID, starting from 0
// while(!feof(input)) //if not the end, read
while (fread(&runInfo, sizeof(RunInfo), 1, input)) {
runID++;
int nbParticle = runInfo.nbParticle;
// ***********the following codes are used
// if**************************************(begin)
// ***********the index of projection, slice and pixel is not correctly
// configured in the simulation
runInfo.projectionIndex = runID / (nbSlice * nbPixel);
int remain = runID % (nbSlice * nbPixel);
runInfo.sliceIndex = remain / nbPixel;
runInfo.pixelIndex = remain % nbPixel;
//******************************************************************************************(end)
if (!nbParticle) continue;
std::vector<ParticleInfo> proton(nbParticle);
fread(&proton[0], sizeof(ParticleInfo), nbParticle, input);
if (runInfo.projectionIndex >= projection_index_begin
&& runInfo.projectionIndex <= projection_index_end)
{
if (runInfo.sliceIndex >= slice_index_begin && runInfo.sliceIndex <= slice_index_end) {
for (int i = 0; i < nbParticle; ++i) {
energies.push_back(proton[i].energy_keV);
if (proton[i].energy_keV > eMax) eMax = proton[i].energy_keV;
}
}
}
else
break;
}
fclose(input);
Plot(energies, bin, eMin, eMax + 10);
}
examples/advanced/stim_pixe_tomography/Scripts/TomoSpectrum.C
+103
View File
@@ -0,0 +1,103 @@
//***********************************************************************************************************
// TomoSpectrum.C
// Root command file
// Type: root TomoSpectrum.C
//
// It visualizes the spectrum of X-rays and plots a graph by reading PixeEvent data.
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
void Plot(int nbChannels, vector<int>& X, vector<int>& Y)
{
gROOT->Reset();
auto mycanvas = new TCanvas("canvas", "canvas", 800, 50, 600, 600);
mycanvas->ToggleEventStatus();
gPad->SetLeftMargin(0.15);
auto graph = new TGraph(nbChannels, X.data(), Y.data());
graph->SetLineColor(8);
graph->Draw("AL");
graph->SetLineColor(8);
graph->SetTitle("TOMO Energy Spectrum");
graph->GetXaxis()->SetTitle("ADC channels");
graph->GetYaxis()->SetTitle("Nb events");
graph->GetXaxis()->CenterTitle();
graph->GetYaxis()->CenterTitle();
mycanvas->Print("TomoSpectrum.png");
}
void TomoSpectrum()
{
FILE* input = fopen("../build/PixeEvent_std_AtExit_Detector135_Aperture70.DAT", "rb");
if (input == NULL) {
printf("----------error for opening the input file--------------\n");
return;
}
//***********************************************************************
//**************************Selection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 1;
const int nbPixel = 20;
int projection_index_begin = 0; // starter of the projection selected
int projection_index_end = 0; // end of the projection selected
int slice_index_begin = 0; // starter of the slice selected
int slice_index_end = 0; // end of the slice selected
//***********************************************************************
//**************************Selection parameters (end)*******************
//***********************************************************************
int nbChannels = 4096;
vector<int> X(nbChannels); // save channels 1-4096, index X: 0-4095
vector<int> Y(nbChannels); // save event counts for channel 1-4096, index Y: 0-4095
PixeEvent p;
while (fread(&p, 7, 1, input)) {
if (p.projectionIndex >= projection_index_begin && p.projectionIndex <= projection_index_end) {
if (p.sliceIndex >= slice_index_begin && p.sliceIndex <= slice_index_end) {
// printf("%d %d %d\n",p.projectionIndex, p.sliceIndex, p.energy_10eV);
Y[p.energy_10eV - 1] = Y[p.energy_10eV - 1] + 1;
}
}
}
fclose(input);
for (int i = 0; i < nbChannels; ++i) {
X[i] = 1 + i;
}
FILE* out = fopen("Spectrum.txt", "wb");
for (int i = 0; i < nbChannels; ++i) {
fprintf(out, "%d\t%d\n", X[i], Y[i]);
}
fclose(out);
Plot(nbChannels, X, Y);
}
examples/advanced/stim_pixe_tomography/Scripts/TomoSpectrum_HIST.C
+120
View File
@@ -0,0 +1,120 @@
//***********************************************************************************************************
// TomoSpectrum_HIST.C
// Root command file
// Type: root TomoSpectrum_HIST.C
//
// It visualizes the spectrum of X-rays and plots a histogram by reading PixeEvent data
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
struct PixeEvent
{
uint16_t energy_10eV;
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
void Plot(vector<double>& energies, int bin, double eMin, double eMax)
{
gROOT->Reset();
auto mycanvas = new TCanvas("canvas", "canvas", 800, 50, 600, 600);
mycanvas->ToggleEventStatus();
gPad->SetLeftMargin(0.15);
auto hist = new TH1D("HIST", "Spectrum", bin, eMin, eMax);
for (int i = 0; i < energies.size(); ++i) {
hist->Fill(energies[i]);
}
hist->Draw();
hist->SetTitle("TOMO Energy Spectrum");
hist->GetXaxis()->SetTitle("ADC channels");
hist->GetYaxis()->SetTitle("Nb events");
hist->GetXaxis()->CenterTitle();
hist->GetYaxis()->CenterTitle();
// hist->GetYaxis()->SetTitleOffset(2);
mycanvas->Print("TomoSpectrum_hist.png");
}
void TomoSpectrum_HIST()
{
FILE* input = fopen("../build/PixeEvent_std_AtExit_Detector135_Aperture70.DAT", "rb");
if (input == NULL) {
printf("----------error for opening the input file--------------\n");
return;
}
//***********************************************************************
//**************************Selection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 1;
const int nbPixel = 20;
int projection_index_begin = 0; // starter of the projection selected
int projection_index_end = 0; // end of the projection selected
int slice_index_begin = 0; // starter of the slice selected
int slice_index_end = 0; // end of the slice selected
//********************Parameters for spectrum***************************
int nbChannels = 4096;
double eMin = 0; // initialization
double eMax = 0; //
//***********************************************************************
//**************************Selection parameters (end)*******************
//***********************************************************************
vector<double> energies;
PixeEvent p;
while (fread(&p, 7, 1, input)) {
if (p.projectionIndex >= projection_index_begin && p.projectionIndex <= projection_index_end) {
if (p.sliceIndex >= slice_index_begin && p.sliceIndex <= slice_index_end) {
energies.push_back(p.energy_10eV);
if (p.energy_10eV > eMax) eMax = p.energy_10eV;
}
}
}
fclose(input);
long int size = energies.size();
vector<int> X(nbChannels); // save channels 1-4096
vector<int> Y(nbChannels);
for (long int i = 0; i < size; ++i) {
int energy = energies[i];
Y[energy - 1] = Y[energy - 1] + 1;
}
for (int i = 0; i < nbChannels; ++i) {
X[i] = 1 + i;
}
FILE* out = fopen("Spectrum_hist.txt", "wb");
for (int i = 0; i < nbChannels; ++i) {
fprintf(out, "%d\t%d\n", X[i], Y[i]);
}
fclose(out);
Plot(energies, nbChannels, 0, nbChannels);
}
examples/advanced/stim_pixe_tomography/Scripts/TomoSpectrum_HIST_proton.C
+122
View File
@@ -0,0 +1,122 @@
//***********************************************************************************************************
// TomoSpectrum_HIST_proton.C
// Root command file
// Type: root TomoSpectrum_HIST_proton.C
//
// It visualizes the spectrum of protons and plots a histogram by reading StimEvent data
//
// More information is available in UserGuide
// Created by Z.LI LP2i Bordeaux 2022
//***********************************************************************************************************
#include <math.h>
#include <stdint.h>
#include <stdio.h>
#include <string.h>
#include <vector>
// using namespace std;
struct StimEvent
{
uint16_t energy_keV; // different from Pixe Event, it is in keV
uint16_t pixelIndex;
uint16_t sliceIndex;
uint8_t projectionIndex;
};
void Plot(vector<double>& energies, int bin, double eMin, double eMax)
{
gROOT->Reset();
auto mycanvas = new TCanvas("canvas", "canvas", 800, 50, 600, 600);
mycanvas->ToggleEventStatus();
gPad->SetLeftMargin(0.15);
auto hist = new TH1D("HIST", "Spectrum", bin, eMin, eMax);
for (int i = 0; i < energies.size(); ++i) {
hist->Fill(energies[i]);
}
hist->Draw();
hist->SetTitle("TOMO Energy Spectrum");
hist->GetXaxis()->SetTitle("ADC channels");
hist->GetYaxis()->SetTitle("Nb events");
hist->GetXaxis()->CenterTitle();
hist->GetYaxis()->CenterTitle();
// hist->GetYaxis()->SetTitleOffset(2);
mycanvas->Print("TomoSpectrum_hist_proton.png");
}
void TomoSpectrum_HIST_proton()
{
FILE* input = fopen("../build/StimEvent_std_Detector0_Aperture10.2.DAT", "rb");
if (input == NULL) {
printf("----------error for opening the input file--------------\n");
return;
}
//***********************************************************************
//**************************Selection parameters (begin)*****************
//***********************************************************************
const int nbProjection = 10;
const int nbSlice = 128;
const int nbPixel = 20;
int projection_index_begin = 0; // starter of the projection selected
int projection_index_end = 0; // end of the projection selected
int slice_index_begin = 64; // starter of the slice selected
int slice_index_end = 64; // end of the slice selected
//********************Parameters for spectrum***************************
int nbChannels = 4096;
double eMin = 0; // initialization
double eMax = 0; //
//***********************************************************************
//**************************Selection parameters (end)*******************
//***********************************************************************
vector<double> energies;
StimEvent s;
while (fread(&s, 7, 1, input)) {
if (s.projectionIndex >= projection_index_begin && s.projectionIndex <= projection_index_end) {
if (s.sliceIndex >= slice_index_begin && s.sliceIndex <= slice_index_end) {
energies.push_back(s.energy_keV);
if (s.energy_keV > eMax) eMax = s.energy_keV;
}
}
}
fclose(input);
if (eMax > 4096) printf("---error in data----\n");
long int size = energies.size();
vector<int> X(nbChannels); // save channels 1-4096
vector<int> Y(nbChannels);
for (long int i = 0; i < size; ++i) {
int energy = energies[i];
Y[energy - 1] = Y[energy - 1] + 1;
}
for (int i = 0; i < nbChannels; ++i) {
X[i] = 1 + i;
}
FILE* out = fopen("Spectrum_hist_proton.txt", "wb");
for (int i = 0; i < nbChannels; ++i) {
fprintf(out, "%d\t%d\n", X[i], Y[i]);
}
fclose(out);
Plot(energies, nbChannels, 0, nbChannels);
}
examples/advanced/stim_pixe_tomography/Scripts/generate_voxelized_sphere_phantom.py
Executable
+180
View File
@@ -0,0 +1,180 @@
import sys
import struct
import math
import numpy as np
# lists for super resolution (vol_work) and regular resolution (vol_result)
vol_work = []
vol_result = []
############################################################################
# size image 128x128 -> 500 microm -> resol x,y : 3.90625 microm #
# nb slices 128 -> 500 microm -> resol z : 3.90625 microm #
############################################################################
sizex = 128
sizey = 128
sizez = 128
resolx = 3.90625
resoly = 3.90625
resolz = 3.90625
superres = 8 # factor of super resolution
# sphere 1 (radius) - outer sphere
r1 = 196
# sphere 2 (radius) - inner sphere
r2 = 171
# density values for sphere 1 and sphere 2
type = 2 # type for constructing a STIM or PIXE phantom
# type = 1, STIM phantom, density value for STIM in 0.01 g/cm3
# type =2, PIXE phantom, density value for PIXE in 0.000001 g/cm3, namely microgram/cm3
value1 = 0
value2 = 0
if type == 1:
value1 = 108
value2 = 0
elif type == 2:
value1 = 54000
value2 = 0
# center of two spheres
x0 = 0.0
y0 = 0.0
z0 = -1.953125
# size in super resolution by voxel
super_sizex = sizex * superres
super_sizey = sizey * superres
super_sizez = sizez * superres
center_shift = sizex / 2 # translation of half scan
def make_sphere_center(r, x, y, z, value):
rsample = (r / resolx) * superres # radius in super resolution by voxel
xsample = (x / resolx) * superres
ysample = (y / resoly) * superres
zsample = (z / resolz) * superres
center_shift_sample = center_shift * superres # translation of the center for x (i) and y (j) axis
print(rsample, xsample, ysample, zsample)
number = 0
for k in range(0, super_sizez):
for j in range(0, super_sizey):
for i in range(0, super_sizex):
ii = i + 0.5
jj = j + 0.5
kk = k + 0.5
res = pow((ii - xsample - center_shift_sample), 2) / (rsample * rsample) + \
pow((jj - ysample - center_shift_sample), 2) / (rsample * rsample) + \
pow((kk - zsample - center_shift_sample), 2) / (rsample * rsample) # z-axis correction done
# if the point (ii, jj, kk) is in the sphere, we attribute the voxel (i,j, k) value
if (res <= 1.0):
vol_work[i + j * super_sizex + k * super_sizex * super_sizey] = value
number += 1
print(number)
# initialisation for two tables vol_result (128*128*128), vol_work (128*superres)*(128*superres)*(128*superres)
def initialize():
for k in range(0, sizez):
for j in range(0, sizey):
for i in range(0, sizex):
vol_result.append(0.0)
for k in range(0, super_sizez):
for j in range(0, super_sizey):
for i in range(0, super_sizex):
vol_work.append(0.0)
# Calculate the vol_result based on vol_work
def undersample():
x = 0
y = 0
z = 0
for k in range(0, super_sizez, superres):
for j in range(0, super_sizey, superres):
for i in range(0, super_sizex, superres):
# print ("***",i,j,k)
total = 0
for kk in range(0, superres):
for jj in range(0, superres):
for ii in range(0, superres):
total = total + vol_work[
i + ii + (j + jj) * super_sizex + (k + kk) * (super_sizex * super_sizey)]
vol_result[x + y * sizex + z * (sizex * sizey)] = total / (superres * superres * superres)
# print ("###",vol_result[x+y*sizex+z*(sizex*sizey)])
x += 1
y += 1
x = 0
z += 1
y = 0
# save the total volume of super resolution
def save_whole_work(file):
fd = open(file, "wb")
for i in range(0, len(vol_work)):
fd.write(struct.pack("f", vol_work[i]))
fd.close()
# save one slice in super resolution vol_work
# 0<=slice<super_sizez (128*8=1024)
def save_workslice(file, slice):
fd = open(file, "wb")
for j in range(0, super_sizey):
for i in range(0, super_sizex):
fd.write(struct.pack("f", vol_work[i + j * super_sizex + slice * super_sizex * super_sizey]))
fd.close()
# save the total result volume
def save_whole_result(file):
fd = open(file, "wb")
for i in range(0, len(vol_result)):
fd.write(struct.pack("f", vol_result[i]))
fd.close()
# save one slie in regular resolution vol_result
# 0<=slice<128
def save_slice(file, slice):
fd = open(file, "wb")
for j in range(0, sizey):
for i in range(0, sizex):
fd.write(struct.pack("f", vol_result[i + j * sizex + slice * sizex * sizey]))
fd.close()
print("------intialisation------")
initialize()
print("------end intialisation------")
print("------begin sphere 1------")
make_sphere_center(r1, x0, y0, z0, value1)
print("------end sphere 1------")
print("------begin sphere 2------")
make_sphere_center(r2, x0, y0, z0, value2)
print("------end sphere 2------")
print("------begin undersample------")
undersample()
print("------end undersample------")
print("The length of vol_work: ", len(vol_work))
print("The length of vol_result: ", len(vol_result))
# print ("------begin save slice 63 ------")
# save_slice("./slice_63.dat",63)
# print ("------end save slice 63 ------")
save_whole_result("./vol_result.dat")
save_whole_work("./vol_work.dat")
print("------end save work------")
examples/advanced/stim_pixe_tomography/Scripts/generate_voxelized_worm_phantom.py
Executable
+265
View File
@@ -0,0 +1,265 @@
import sys
import struct
import math
# tables for super resolution (vol_work) and regular resolution (vol_result)
vol_work = []
vol_result = []
############################################################################
# size image 128x128 -> 76.464 microm -> resol x,y : 0,597375 microm #
# nb slices 128 -> 201,217 microm -> resol z : 1,57200781 microm #
# slice of interest : 11 -> 18,07 microm #
############################################################################
sizex = 128
sizey = 128
sizez = 128
double_sizez = 256 # for computation only
resolx = 0.597375
resoly = 0.597375
resolz = 1.57200781
superres = 8
slice = 11
# ellipsoide 1 (semi-axes, center, rotation z, value) - skin
a1 = 20.61
b1 = 21.42
c1 = 187.82
x1 = 0.0
y1 = 0.0
z1 = 0.0
rz1 = 0.0
value1 = 49.73
# ellipsoide 2 (semi-axes, center, rotation z, value) - body
a2 = 18.61
b2 = 19.01
c2 = 186.64
x2 = -0.39
y2 = 0.0
z2 = 0.0
rz2 = 0.0
value2 = 40.85
# ellipsoide 3 (semi-axes, center, rotation z, value) - core 1
a3 = 1.95
b3 = 3.23
c3 = 4.32
x3 = 1.97
y3 = -7.09
z3 = 18.07
rz3 = 0.0
value3 = 66.26
# ellipsoide 4 (semi-axes, center, rotation z, value) - core 2
a4 = 2.08
b4 = 2.46
c4 = 4.32
x4 = 8.27
y4 = -3.15
z4 = 18.07
rz4 = 0.0
value4 = 60.23
# ellipsoide 5 (semi-axes, center, rotation z, value) - intestine
a5 = 3.67
b5 = 16.48
c5 = 28.68
x5 = 1.25
y5 = 0.61
z5 = 0
rz5 = -58.99
value5 = 54.06
# ellipsoide 6 ((emi-axes, center, rotation z, value) - region titane
a6 = 1.62
b6 = 1.95
c6 = 1.62
x6 = 6.25
y6 = 3.61
z6 = 18.07
rz6 = 0.0
value6 = 75.14
# size in super resolution by voxel
super_sizex = sizex * superres
super_sizey = sizey * superres
super_sizez = double_sizez * superres # we will save only half of the z
center_shift = sizex / 2 # for x and y axis
center_shift_z = double_sizez / 2
def make_ellipse_center(a, b, c, x, y, z, rz, value):
asample = (a / resolx) * superres
bsample = (b / resoly) * superres
csample = (c / resolz) * superres
# if (rz != 0.0):
rzsample = math.radians(rz) # angle in radians
xsample = (x / resolx) * superres
ysample = (y / resoly) * superres
zsample = (z / resolz) * superres
center_shift_sample = center_shift * superres # translation of center for x and y axis
center_shift_z_sample = center_shift_z * superres # translation of center for z axis
print(asample, bsample, csample, xsample, ysample, zsample)
number = 0 ## debug
# a loop in axes of voxels
for k in range(0, super_sizez):
for j in range(0, super_sizey):
for i in range(0, super_sizex):
ii = i + 0.5
jj = j + 0.5
kk = k + 0.5
res = pow(((ii - xsample - center_shift_sample) * math.cos(rzsample) + (
jj - ysample - center_shift_sample) * math.sin(rzsample)), 2) / (asample * asample) + \
pow(((ii - xsample - center_shift_sample) * math.sin(rzsample) - (
jj - ysample - center_shift_sample) * math.cos(rzsample)), 2) / (bsample * bsample) + \
((kk - zsample - center_shift_z_sample) * (kk - zsample - center_shift_z_sample)) / (
csample * csample) # z-axis correction done
# print(res)
# if the voxel belongs to the ellipsoide, set the value
if (res <= 1.0):
vol_work[i + j * super_sizex + k * super_sizex * super_sizey] = value
number += 1
print(number)
# initialisation
def initialize():
for k in range(0, double_sizez):
for j in range(0, sizey):
for i in range(0, sizex):
vol_result.append(0.0)
for k in range(0, super_sizez):
for j in range(0, super_sizey):
for i in range(0, super_sizex):
vol_work.append(0.0)
# Calculate the vol_result based on vol_work
def undersample():
x = 0
y = 0
z = 0
for k in range(0, super_sizez, superres):
for j in range(0, super_sizey, superres):
for i in range(0, super_sizex, superres):
# on se place sur v1 et on recupere les valeurs de densite des 8 voxels du voisinage qui vont correspondre a 1 voxel de l'image finale
# v1 = vol_work[i+j*super_sizex+k*(super_sizex*super_sizey)]
# v2 = vol_work[i+j*super_sizex+k*(super_sizex*super_sizey) + 1]
# v3 = vol_work[i+j*super_sizex+k*(super_sizex*super_sizey) + super_sizex]
# v4 = vol_work[i+j*super_sizex+k*(super_sizex*super_sizey) + super_sizex + 1]
# v5 = vol_work[i+j*super_sizex+k*(super_sizex*super_sizey) + super_sizex*super_sizey]
# v6 = vol_work[i+j*super_sizex+k*(super_sizex*super_sizey) + 1 + super_sizex*super_sizey]
# v7 = vol_work[i+j*super_sizex+k*(super_sizex*super_sizey) + super_sizex + super_sizex*super_sizey]
# v8 = vol_work[i+j*super_sizex+k*(super_sizex*super_sizey) + super_sizex + 1 + super_sizex*super_sizey]
# vol_result[x+y*sizex+z*(sizex*sizey)] = (v1+v2+v3+v4+v5+v6+v7+v8)/8.0
# print ("***",i,j,k)
total = 0
for kk in range(0, superres):
for jj in range(0, superres):
for ii in range(0, superres):
total = total + vol_work[
i + ii + (j + jj) * super_sizex + (k + kk) * (super_sizex * super_sizey)]
vol_result[x + y * sizex + z * (sizex * sizey)] = total / (superres * superres * superres)
# print ("###",vol_result[x+y*sizex+z*(sizex*sizey)])
x += 1
y += 1
x = 0
z += 1
y = 0
# Save the total volume (including the negative parts of the ellipsoids)
def save_whole_work(file):
fd = open(file, "wb")
for i in range(0, len(vol_work)):
fd.write(struct.pack("f", vol_work[i]))
# Save half the volume (including only the positive parts of the ellipsoids)
def save_half_work(file):
fd = open(file, "wb")
for i in range(int(len(vol_work) / 2), len(vol_work)):
fd.write(struct.pack("f", vol_work[i]))
# save one slice in super resolution vol_work
# 0<=slice<super_sizez
def save_workslice(file, slice):
fd = open(file, "wb")
for j in range(0, super_sizey):
for i in range(0, super_sizex):
fd.write(struct.pack("f", vol_work[i + j * super_sizex + slice * super_sizex * super_sizey]))
# Save the total result volume (including the negative parts of the ellipsoids)
def save_whole_result(file):
fd = open(file, "wb")
for i in range(0, len(vol_result)):
fd.write(struct.pack("f", vol_result[i]))
# Save half of the result volume (including only the positive parts of the ellipsoids)
def save_half_result(file):
fd = open(file, "wb")
for i in range(int(len(vol_result) / 2), len(vol_result)):
fd.write(struct.pack("f", vol_result[i]))
# save one slie in regular resolution vol_result
# 0<=slice<128
def save_slice(file, slice):
fd = open(file, "wb")
for j in range(0, sizey):
for i in range(0, sizex):
fd.write(struct.pack("f", vol_result[i + j * sizex + slice * sizex * sizey]))
print("------intialisation------")
initialize()
print("------end intialisation------")
print("------begin ellipse 1------------")
make_ellipse_center(a1, b1, c1, x1, y1, z1, rz1, value1)
print("------end ellipse 1--------------")
print("------begin ellipse 2------------")
make_ellipse_center(a2, b2, c2, x2, y2, z2, rz2, value2)
print("------end ellipse 2--------------")
print("------begin ellipse 3------------")
make_ellipse_center(a3, b3, c3, x3, y3, z3, rz3, value3)
print("------end ellipse 3--------------")
print("------begin ellipse 4------------")
make_ellipse_center(a4, b4, c4, x4, y4, z4, rz4, value4)
print("------end ellipse 4--------------")
print("------begin ellipse 5------------")
make_ellipse_center(a5, b5, c5, x5, y5, z5, rz5, value5)
print("------end ellipse 5--------------")
print("------begin ellipse 6------------")
make_ellipse_center(a6, b6, c6, x6, y6, z6, rz6, value6)
print("------end ellipse 6--------------")
print("------begin undersample------")
undersample()
print("------end undersample------")
print("The length of vol_work: ", len(vol_work))
print("The length of vol_result: ", len(vol_result))
# print ("------begin save slice 139 ------")
save_slice("./slice_139.dat", 139)
# print ("------end save slice 139 ------")
save_half_result("./vol_result.dat")
# save_whole_work("./vol_work.dat")
print("------end save work------")
examples/advanced/stim_pixe_tomography/include/ActionInitialization.hh
+50
View File
@@ -0,0 +1,50 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
#ifndef ActionInitialization_h
#define ActionInitialization_h 1
#include <pwdefs.hh>
#include "G4VUserActionInitialization.hh"
/// Action initialization class.
///
class ActionInitialization : public G4VUserActionInitialization
{
public:
ActionInitialization(G4bool isP);
~ActionInitialization() override;
void BuildForMaster() const override;
void Build() const override;
private:
G4bool isPIXE;
};
#endif
examples/advanced/stim_pixe_tomography/include/DetectorConstruction.hh
+143
View File
@@ -0,0 +1,143 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
//
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
#ifndef DetectorConstruction_h
#define DetectorConstruction_h 1
#include "G4Cache.hh"
#include "G4LogicalVolume.hh"
#include "G4VUserDetectorConstruction.hh"
#include "globals.hh"
class G4Box;
class G4Ellipsoid;
class G4Sphere;
class G4VPhysicalVolume;
class G4Material;
class DetectorMessenger;
class G4GlobalMagFieldMessenger;
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
class DetectorConstruction : public G4VUserDetectorConstruction
{
public:
DetectorConstruction();
~DetectorConstruction() override;
void SetAbsorberMaterial(const G4String&);
void SetAbsorberThickness(G4double);
void SetAbsorberSizeYZ(G4double);
void SetAbsorberXpos(G4double);
void SetWorldMaterial(const G4String&);
void SetWorldSizeX(G4double);
void SetWorldSizeYZ(G4double);
void SetPhantomType(G4int value);
G4VPhysicalVolume* Construct() override;
void ConstructSDandField() override;
void PrintGeomParameters();
private:
void DefineMaterials();
void ComputeGeomParameters();
void ChangeGeometry();
void Construct_Phantom1();
void Construct_Phantom2();
void Construct_Phantom3();
G4int phantom_type;
G4Material* fAbsorberMaterial;
G4double fAbsorberThickness;
G4double fAbsorberSizeYZ;
G4double fXposAbs;
G4double fXstartAbs, fXendAbs;
G4Material* fWorldMaterial;
G4double fWorldSizeX;
G4double fWorldSizeYZ;
G4Box* fSolidWorld;
G4LogicalVolume* fLogicWorld;
G4VPhysicalVolume* fPhysiWorld;
G4Box* fSolidAbsorber;
G4LogicalVolume* fLogicAbsorber;
G4VPhysicalVolume* fPhysiAbsorber;
G4Material* material1;
G4Material* material2;
G4Material* material3;
G4Material* material4;
G4Material* material5;
G4Material* material6;
G4Material* material_GDP;
G4Ellipsoid* ellipse1;
G4LogicalVolume* logicEllipse1;
G4VPhysicalVolume* physiEllipse1;
G4Ellipsoid* ellipse2;
G4LogicalVolume* logicEllipse2;
G4VPhysicalVolume* physiEllipse2;
G4Ellipsoid* ellipse3;
G4LogicalVolume* logicEllipse3;
G4VPhysicalVolume* physiEllipse3;
G4Ellipsoid* ellipse4;
G4LogicalVolume* logicEllipse4;
G4VPhysicalVolume* physiEllipse4;
G4Ellipsoid* ellipse5;
G4LogicalVolume* logicEllipse5;
G4VPhysicalVolume* physiEllipse5;
G4Ellipsoid* ellipse6;
G4LogicalVolume* logicEllipse6;
G4VPhysicalVolume* physiEllipse6;
// Ge-doped glow discharge polymer (GDP)
G4Sphere* solid_GDP;
G4LogicalVolume* logic_GDP;
G4VPhysicalVolume* physi_GDP;
DetectorMessenger* fDetectorMessenger;
G4Cache<G4GlobalMagFieldMessenger*> fFieldMessenger;
};
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
#endif
examples/advanced/stim_pixe_tomography/include/DetectorMessenger.hh
+74
View File
@@ -0,0 +1,74 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
//
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
#ifndef DetectorMessenger_h
#define DetectorMessenger_h 1
#include "G4UImessenger.hh"
#include "globals.hh"
class DetectorConstruction;
class G4UIdirectory;
class G4UIcmdWithAString;
class G4UIcmdWithAnInteger;
class G4UIcmdWithADoubleAndUnit;
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
class DetectorMessenger : public G4UImessenger
{
public:
DetectorMessenger(DetectorConstruction*);
~DetectorMessenger() override;
void SetNewValue(G4UIcommand*, G4String) override;
private:
DetectorConstruction* fDetector;
G4UIdirectory* fTomoDir;
G4UIdirectory* fDetDir;
G4UIcmdWithAString* fAbsMaterCmd;
G4UIcmdWithADoubleAndUnit* fAbsThickCmd;
G4UIcmdWithADoubleAndUnit* fAbsSizYZCmd;
G4UIcmdWithADoubleAndUnit* fAbsXposCmd;
G4UIcmdWithAString* fWorldMaterCmd;
G4UIcmdWithADoubleAndUnit* fWorldXCmd;
G4UIcmdWithADoubleAndUnit* fWorldYZCmd;
G4UIcmdWithAnInteger* fPhantomType;
};
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
#endif
examples/advanced/stim_pixe_tomography/include/PhysListEmStandard.hh
+57
View File
@@ -0,0 +1,57 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
//
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
#ifndef PhysListEmStandard_h
#define PhysListEmStandard_h 1
#include "G4VPhysicsConstructor.hh"
#include "globals.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
class PhysListEmStandard : public G4VPhysicsConstructor
{
public:
PhysListEmStandard(const G4String& name = "local");
~PhysListEmStandard() override;
public:
// This method is dummy for physics
void ConstructParticle() override{};
// This method will be invoked in the Construct() method.
// each physics process will be instantiated and
// registered to the process manager of each particle type
void ConstructProcess() override;
};
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
#endif

Some files were not shown because too many files have changed in this diff Show More