Import Geant4 10.5.0 source tree
This commit is contained in:
Gabriele Cosmo
+205
@@ -0,0 +1,205 @@
|
||||
//
|
||||
// ********************************************************************
|
||||
// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// HadrontherapyRBE.hh;
|
||||
//
|
||||
|
||||
#ifndef HadrontherapyRBE_H
|
||||
#define HadrontherapyRBE_H 1
|
||||
|
||||
#include "globals.hh"
|
||||
#include <vector>
|
||||
#include <valarray>
|
||||
#include <map>
|
||||
#include "G4Pow.hh"
|
||||
|
||||
class G4GenericMessenger;
|
||||
|
||||
/**
|
||||
* @brief Main class of the RBE calculation.
|
||||
*
|
||||
* The calculation has to be explicitly enabled
|
||||
* (use macro command)
|
||||
*
|
||||
* Available macro commands:
|
||||
*
|
||||
* - /rbe/calculation 0/1 : enable or disable RBE calculation
|
||||
* - /rbe/verbose 0/1/2 : level of screen output detail
|
||||
* - /rbe/loadLemTable [path] : read a CSV file with alphas, betas, ...
|
||||
* - /rbe/cellLine [name] : select one of the cell lines from the data file
|
||||
* - /rbe/doseScale [number] : factor to make the survival/RBE calculation correct
|
||||
* - /rbe/accumulate 0/1 : enable or disable data summing over multiple runs
|
||||
* - /rbe/reset : clear accumulated data back to 0.
|
||||
*/
|
||||
class HadrontherapyRBE
|
||||
{
|
||||
public:
|
||||
virtual ~HadrontherapyRBE();
|
||||
|
||||
// Make a new & get instance pointer
|
||||
static HadrontherapyRBE* CreateInstance(G4int nX, G4int nY, G4int nZ, G4double massOfVoxel);
|
||||
static HadrontherapyRBE* GetInstance();
|
||||
|
||||
// If this is false (set with macro), nothing happens
|
||||
G4bool IsCalculationEnabled() const { return fCalculationEnabled; }
|
||||
|
||||
// If this is true, dose (and alpha/beta parameters) are accumulated over multiple runs
|
||||
G4bool IsAccumulationEnabled() const { return fAccumulate; }
|
||||
|
||||
// Initialization of data from a CSV file
|
||||
void LoadLEMTable(G4String path);
|
||||
|
||||
// Select the cell and update the pointer
|
||||
void SetCellLine(G4String name);
|
||||
|
||||
// Calculate alpha and beta for single deposition, {0,0} if not applicable
|
||||
std::tuple<G4double, G4double> GetHitAlphaAndBeta(G4double E, G4int Z);
|
||||
|
||||
// Parameter setting
|
||||
void SetDoseScale(G4double scale);
|
||||
void SetCalculationEnabled(G4bool enabled);
|
||||
void SetAccumulationEnabled(G4bool accumulate);
|
||||
|
||||
// Verbosity for output
|
||||
void SetVerboseLevel(G4int level) { fVerboseLevel = level; }
|
||||
G4int GetVerboseLevel() const { return fVerboseLevel; }
|
||||
|
||||
// Alias for matrix type
|
||||
using array_type = std::valarray<G4double>;
|
||||
|
||||
// Calculation
|
||||
void ComputeAlphaAndBeta();
|
||||
void ComputeRBE();
|
||||
|
||||
// Update the class with accumulated data
|
||||
// (To be used from HadrontherapyRBEAccumulable)
|
||||
void SetAlphaNumerator(const array_type alpha);
|
||||
void SetBetaNumerator(const array_type beta);
|
||||
void SetEnergyDeposit(const array_type eDep);
|
||||
void SetDenominator(const array_type denom);
|
||||
|
||||
// Accumulation variants necessary for multi-run sumation
|
||||
void AddAlphaNumerator(const array_type alpha);
|
||||
void AddBetaNumerator(const array_type beta);
|
||||
void AddEnergyDeposit(const array_type eDep);
|
||||
void AddDenominator(const array_type denom);
|
||||
|
||||
// Clear accumulated data
|
||||
void Reset();
|
||||
|
||||
// Output to text files (called at the end of run)
|
||||
void StoreAlphaAndBeta();
|
||||
void StoreRBE();
|
||||
|
||||
// Information about voxels
|
||||
size_t GetNumberOfVoxelsAlongX() const { return fNumberOfVoxelsAlongX; }
|
||||
size_t GetNumberOfVoxelsAlongY() const { return fNumberOfVoxelsAlongY; }
|
||||
size_t GetNumberOfVoxelsAlongZ() const { return fNumberOfVoxelsAlongZ; }
|
||||
|
||||
// Some basic output to the screen
|
||||
void PrintParameters();
|
||||
|
||||
protected:
|
||||
inline G4int Index(G4int i, G4int j, G4int k) {return (i * fNumberOfVoxelsAlongY + j) * fNumberOfVoxelsAlongZ + k;}
|
||||
|
||||
// Interpolation
|
||||
// G4int GetRowVecEnergy();
|
||||
// G4bool NearLookup(G4double E, G4double DE);
|
||||
// G4bool LinearLookup(G4double E, G4double DE, G4int Z);
|
||||
// void interpolation_onE(G4int k,G4int m, G4int indexE, G4double E, G4int Z);
|
||||
// G4bool interpolation_onLET1_onLET2_onE(G4int k,G4int m, G4int indexE, G4double E, G4double LET);
|
||||
// void InitDynamicVec(std::vector<G4double> &vecEnergy, G4int matrix_energy);
|
||||
|
||||
// Messenger initialization
|
||||
void CreateMessenger();
|
||||
|
||||
private:
|
||||
HadrontherapyRBE(G4int numberOfVoxelX, G4int numberOfVoxelY, G4int numberOfVoxelZ, G4double massOfVoxel);
|
||||
|
||||
G4GenericMessenger* fMessenger;
|
||||
G4Pow* g4pow = G4Pow::GetInstance();
|
||||
|
||||
static HadrontherapyRBE* instance;
|
||||
G4int fVerboseLevel { 1 };
|
||||
|
||||
// Parameters for calculation
|
||||
G4double fAlphaX { 0.0 };
|
||||
G4double fBetaX { 0.0 };
|
||||
G4double fDoseCut { 0.0 };
|
||||
G4double fDoseScale { 1.0 };
|
||||
|
||||
// Output paths (TODO: Change to analysis tools)
|
||||
G4String fAlphaBetaPath { "AlphaAndBeta.out" };
|
||||
G4String fRBEPath { "RBE.out" };
|
||||
|
||||
// Voxelization
|
||||
G4int fNumberOfVoxelsAlongX, fNumberOfVoxelsAlongY, fNumberOfVoxelsAlongZ;
|
||||
G4int fNumberOfVoxels;
|
||||
G4double fMassOfVoxel;
|
||||
|
||||
G4double* x; // TODO: Currently not used (that much)
|
||||
|
||||
G4bool fCalculationEnabled { false };
|
||||
G4bool fAccumulate { false };
|
||||
|
||||
// Matrices to be set when accumulated
|
||||
array_type fAlpha;
|
||||
array_type fBeta;
|
||||
array_type fDose; // Note: this is calculated from energyDeposit, massOfVoxel and doseScale
|
||||
|
||||
array_type fAlphaNumerator;
|
||||
array_type fBetaNumerator;
|
||||
array_type fDenominator;
|
||||
|
||||
// Matrices of calculated values
|
||||
array_type fLnS;
|
||||
array_type fSurvival;
|
||||
array_type fDoseX;
|
||||
array_type fRBE;
|
||||
|
||||
// Available tables and associated values.
|
||||
using vector_type = std::map<G4int, std::vector<G4double>>;
|
||||
std::map<G4String, vector_type> fTablesEnergy;
|
||||
// std::map<G4String, vector_type> fTablesLet;
|
||||
std::map<G4String, vector_type> fTablesAlpha;
|
||||
std::map<G4String, vector_type> fTablesBeta;
|
||||
std::map<G4String, G4double> fTablesAlphaX;
|
||||
std::map<G4String, G4double> fTablesBetaX;
|
||||
std::map<G4String, G4double> fTablesDoseCut;
|
||||
|
||||
// Selected tables and associated values.
|
||||
// (changed when the cell line is set)
|
||||
G4String fActiveCellLine = "";
|
||||
vector_type* fActiveTableEnergy { nullptr };
|
||||
// vector_type* fActiveTableLet { nullptr };
|
||||
vector_type* fActiveTableAlpha { nullptr };
|
||||
vector_type* fActiveTableBeta { nullptr };
|
||||
std::map<G4int, G4double> fMaxEnergies;
|
||||
std::map<G4int, G4double> fMinEnergies;
|
||||
G4int fMinZ;
|
||||
G4int fMaxZ;
|
||||
};
|
||||
#endif
|
||||
|
||||
Reference in New Issue
Block a user