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This commit is contained in:
Gabriele Cosmo
2016-06-10 12:08:39 +02:00
parent 286caacf06
commit c9b32a6c0a
5770 changed files with 1050949 additions and 367105 deletions
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examples/advanced/brachytherapy/src/BrachyActionInitialization.cc
+8 -5
View File
@@ -29,16 +29,19 @@
#include "BrachyPrimaryGeneratorAction.hh"
#include "BrachySteppingAction.hh"
#include "G4RunManager.hh"
#include "G4GeneralParticleSource.hh"
BrachyActionInitialization::BrachyActionInitialization(BrachyAnalysisManager* analysis_manager):
BrachyActionInitialization::BrachyActionInitialization():
G4VUserActionInitialization()
{
analysis = analysis_manager;
masterGPS = new G4GeneralParticleSource();
}
BrachyActionInitialization::~BrachyActionInitialization()
{}
{
delete masterGPS;
}
void BrachyActionInitialization::BuildForMaster() const
{
@@ -52,10 +55,10 @@ void BrachyActionInitialization::BuildForMaster() const
void BrachyActionInitialization::Build() const
{
// Initialize the primary particles
BrachyPrimaryGeneratorAction* primary = new BrachyPrimaryGeneratorAction(analysis);
BrachyPrimaryGeneratorAction* primary = new BrachyPrimaryGeneratorAction();
SetUserAction(primary);
BrachySteppingAction* stepping = new BrachySteppingAction(analysis);
BrachySteppingAction* stepping = new BrachySteppingAction();
SetUserAction(stepping);
}
examples/advanced/brachytherapy/src/BrachyAnalysisManager.cc
+42 -76
View File
@@ -35,103 +35,69 @@ Author: Susanna Guatelli
#include "G4UnitsTable.hh"
#include "G4SystemOfUnits.hh"
BrachyAnalysisManager* BrachyAnalysisManager::instance = 0;
BrachyAnalysisManager::BrachyAnalysisManager()
{
factoryOn = false;
// Initialization
// histograms
for (G4int k=0; k<MaxHisto; k++) fHistId[k] = 0;
// Initialization ntuple
for (G4int k=0; k<MaxNtCol; k++) {
fNtColId[k] = 0;
}
primaryParticleSpectrum = 0;
#ifdef ANALYSIS_USE
theTFile = 0;
histo = 0;
ntuple = 0;
#endif
}
BrachyAnalysisManager::~BrachyAnalysisManager()
{
#ifdef G4ANALYSIS_USE
delete theTFile; theTFile = 0;
delete histo; histo = 0;
delete ntuple; ntuple = 0;
#endif
}
BrachyAnalysisManager* BrachyAnalysisManager::GetInstance()
{
if (instance == 0) instance = new BrachyAnalysisManager;
return instance;
}
void BrachyAnalysisManager::book()
{
G4AnalysisManager* AnalysisManager = G4AnalysisManager::Instance();
AnalysisManager->SetVerboseLevel(2);
#ifdef ANALYSIS_USE
delete theTFile;
theTFile = new TFile("brachytherapy.root", "RECREATE");
// Create a root file
G4String fileName = "brachytherapy.root";
histo = new TH1F("h10","energy spectrum", 800, 0., 800);
ntuple = new TNtuple("ntuple","edep3D","xx:yy:zz:edep");
#endif
}
// Create directories
AnalysisManager->SetHistoDirectoryName("brachy_histo");
AnalysisManager->SetNtupleDirectoryName("brachy_ntuple");
G4bool fileOpen = AnalysisManager->OpenFile(fileName);
if (!fileOpen) {
G4cout << "\n---> HistoManager::book(): cannot open "
<< fileName[1]
<< G4endl;
return;
}
//creating a 1D histograms
AnalysisManager->SetFirstHistoId(1);
// Histogram containing the primary particle energy (MeV)
fHistId[1] = AnalysisManager -> CreateH1("1",
"Initial energy",
1000, 0., 1000.);
//Parameters of CreateH1: histoID, histo name, bins' number, xmin, xmax
primaryParticleSpectrum = AnalysisManager-> GetH1(fHistId[1]);
//creating a ntuple, containg 3D energy deposition in the phantom
AnalysisManager -> CreateNtuple("1", "3Dedep");
fNtColId[0] = AnalysisManager->CreateNtupleDColumn("xx");
fNtColId[1] = AnalysisManager->CreateNtupleDColumn("yy");
fNtColId[2] = AnalysisManager->CreateNtupleDColumn("zz");
fNtColId[3] = AnalysisManager->CreateNtupleDColumn("edep");
AnalysisManager->FinishNtuple();
factoryOn = true;
}
void BrachyAnalysisManager::FillPrimaryParticleHistogram(G4double primaryParticleEnergy)
{
// 1DHistogram: energy spectrum of primary particles
primaryParticleSpectrum -> fill(primaryParticleEnergy);
}
#ifdef ANALYSIS_USE
void BrachyAnalysisManager::FillNtupleWithEnergyDeposition(G4double xx,
G4double yy,
G4double zz,
G4double energyDep)
{
G4AnalysisManager* AnalysisManager = G4AnalysisManager::Instance();
AnalysisManager->FillNtupleDColumn(fNtColId[0], xx);
AnalysisManager->FillNtupleDColumn(fNtColId[1], yy);
AnalysisManager->FillNtupleDColumn(fNtColId[2], zz);
AnalysisManager->FillNtupleDColumn(fNtColId[3], energyDep);
AnalysisManager->AddNtupleRow();
ntuple -> Fill(xx, yy, zz, energyDep);
}
void BrachyAnalysisManager::FillPrimaryParticleHistogram(G4double primaryParticleEnergy)
{
// 1DHistogram: energy spectrum of primary particles
histo-> Fill(primaryParticleEnergy);
}
#endif
void BrachyAnalysisManager::save()
{
if (factoryOn)
{
G4AnalysisManager* AnalysisManager = G4AnalysisManager::Instance();
AnalysisManager->Write();
AnalysisManager->CloseFile();
delete G4AnalysisManager::Instance();
factoryOn = false;
}
#ifdef ANALYSIS_USE
if (theTFile)
{
theTFile -> Write();
theTFile -> Close();
}
#endif
}
examples/advanced/brachytherapy/src/BrachyPrimaryGeneratorAction.cc
+9 -5
View File
@@ -37,25 +37,28 @@
// * *
// ********************************************
//
// $Id: BrachyPrimaryGeneratorAction.cc 74021 2013-09-19 13:41:54Z gcosmo $
// $Id: BrachyPrimaryGeneratorAction.cc 84280 2014-10-13 07:21:10Z gcosmo $
//
#include "globals.hh"
#include "BrachyPrimaryGeneratorAction.hh"
#include "Randomize.hh"
#include "G4Event.hh"
#include "G4GeneralParticleSource.hh"
#include "G4RunManager.hh"
#include "G4SystemOfUnits.hh"
#include "BrachyAnalysisManager.hh"
BrachyPrimaryGeneratorAction::BrachyPrimaryGeneratorAction(BrachyAnalysisManager* analysis_manager)
#ifdef ANALYSIS_USE
#include "BrachyAnalysisManager.hh"
#endif
BrachyPrimaryGeneratorAction::BrachyPrimaryGeneratorAction()
{
// Use the GPS to generate primary particles,
// Particle type, energy position, direction are specified in the
// the macro file primary.mac
gun = new G4GeneralParticleSource();
analysis = analysis_manager;
}
BrachyPrimaryGeneratorAction::~BrachyPrimaryGeneratorAction()
@@ -70,8 +73,9 @@ void BrachyPrimaryGeneratorAction::GeneratePrimaries(G4Event* anEvent)
#ifdef ANALYSIS_USE
if (gun -> GetParticleDefinition()-> GetParticleName()== "gamma")
{
BrachyAnalysisManager* analysis = BrachyAnalysisManager::GetInstance();
G4double energy = gun -> GetParticleEnergy();
analysis -> FillPrimaryParticleHistogram(energy);
analysis -> FillPrimaryParticleHistogram(energy/keV);
}
#endif
}
examples/advanced/brachytherapy/src/BrachySteppingAction.cc
+6 -1
View File
@@ -41,11 +41,15 @@
#include "G4TrackStatus.hh"
#include "G4ParticleDefinition.hh"
#include "G4Gamma.hh"
#ifdef ANALYSIS_USE
#include "BrachyAnalysisManager.hh"
#endif
#include "BrachySteppingAction.hh"
#include "G4SystemOfUnits.hh"
BrachySteppingAction::BrachySteppingAction(BrachyAnalysisManager* analysisMan):analysis(analysisMan)
BrachySteppingAction::BrachySteppingAction()
{
}
@@ -84,6 +88,7 @@ void BrachySteppingAction::UserSteppingAction(const G4Step* aStep)
if (process == "RadioactiveDecay")
{
#ifdef ANALYSIS_USE
BrachyAnalysisManager* analysis = BrachyAnalysisManager::GetInstance();
G4double energy = (*fSecondary)[lp1] -> GetKineticEnergy();
// Store the initial energy of particles in a 1D histogram
analysis -> FillPrimaryParticleHistogram(energy/keV);
examples/advanced/brachytherapy/src/BrachyUserScoreWriter.cc
+6 -2
View File
@@ -34,7 +34,11 @@ Original code from geant4/examples/extended/runAndEvent/RE03, by M. Asai
#include <fstream>
#include "BrachyUserScoreWriter.hh"
#include "G4SystemOfUnits.hh"
#ifdef ANALYSIS_USE
#include "BrachyAnalysisManager.hh"
#endif
#include "G4MultiFunctionalDetector.hh"
#include "G4SDParticleFilter.hh"
#include "G4VPrimitiveScorer.hh"
@@ -47,10 +51,9 @@ Original code from geant4/examples/extended/runAndEvent/RE03, by M. Asai
// The same information is stored in a ntuple, in the
// brachytherapy.root file
BrachyUserScoreWriter::BrachyUserScoreWriter(BrachyAnalysisManager* analysis_manager):
BrachyUserScoreWriter::BrachyUserScoreWriter():
G4VScoreWriter()
{
analysis = analysis_manager;
}
BrachyUserScoreWriter::~BrachyUserScoreWriter()
@@ -124,6 +127,7 @@ for(int x = 0; x < fNMeshSegments[0]; x++) {
#ifdef ANALYSIS_USE
// Save the same information in the output analysis file
BrachyAnalysisManager* analysis = BrachyAnalysisManager::GetInstance();
analysis -> FillNtupleWithEnergyDeposition(xx, yy, zz, *(value->second)/keV);
#endif
}}}}