Import Geant4 11.4.0.beta source tree

This commit is contained in:
Gabriele Cosmo
2025-06-26 09:17:29 +02:00
parent 20a218bbe1
commit a499fb82e9
1941 changed files with 203285 additions and 95593 deletions
@@ -0,0 +1,65 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
/// @file ActionInitialization.cc
/// @brief Define action initialization
#include "ActionInitialization.hh"
#include "EventAction.hh"
#include "MedicalBeam.hh"
#include "RunAction.hh"
#include "RunActionMaster.hh"
#include "G4Threading.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
ActionInitialization::ActionInitialization(G4bool useNtuple, G4bool mergeNtuple)
: G4VUserActionInitialization(), fUseNtuple(useNtuple), fMergeNtuple(mergeNtuple)
{}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
ActionInitialization::~ActionInitialization() {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void ActionInitialization::BuildForMaster() const
{
SetUserAction(new RunActionMaster(fUseNtuple, fMergeNtuple));
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void ActionInitialization::Build() const
{
G4cout << "ActionInitialization::Build()" << G4endl;
SetUserAction(new MedicalBeam);
SetUserAction(new EventAction);
if (G4Threading::IsMultithreadedApplication())
SetUserAction(new RunAction(fUseNtuple, fMergeNtuple));
else
SetUserAction(
new RunActionMaster(fUseNtuple, fMergeNtuple)); // Use master version for sequential
}
@@ -0,0 +1,165 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
/// @file Analysis.cc
/// @brief Define histograms and ntuples
#include "Analysis.hh"
#include "G4AutoDelete.hh"
#include "G4SystemOfUnits.hh"
// Note: ntuple merging is supported only with Root format
#ifndef G4MULTITHREADED
# include "G4RootMpiAnalysisManager.hh"
using G4AnalysisManager = G4RootMpiAnalysisManager;
#else
# include "G4RootAnalysisManager.hh"
using G4AnalysisManager = G4RootAnalysisManager;
#endif
G4ThreadLocal G4int Analysis::fincidentFlag = false;
G4ThreadLocal Analysis* the_analysis = 0;
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
Analysis* Analysis::GetAnalysis()
{
if (!the_analysis) {
the_analysis = new Analysis();
G4AutoDelete::Register(the_analysis);
}
return the_analysis;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
Analysis::Analysis()
: fUseNtuple(true),
fMergeNtuple(true),
fincident_x_hist(0),
fincident_map(0),
fdose_hist(0),
fdose_map(0),
fdose_prof(0),
fdose_map_prof(0),
fdose_map3d(0)
{}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void Analysis::Book()
{
G4cout << "Analysis::Book start, fUseNtuple: " << fUseNtuple << G4endl;
G4AnalysisManager* mgr = G4AnalysisManager::Instance();
mgr->SetVerboseLevel(1);
#ifdef G4MULTITHREADED
// MT ntuple merging
mgr->SetNtupleMerging(fMergeNtuple);
#endif
fincident_x_hist = mgr->CreateH1("incident_x", "Incident X", 100, -5 * cm, 5 * cm, "cm");
fincident_map = mgr->CreateH2("incident_map", "Incident Map", 50, -5 * cm, 5 * cm, 50, -5 * cm,
5 * cm, "cm", "cm");
fdose_hist = mgr->CreateH1("dose", "Dose distribution", 500, 0, 50 * cm, "cm");
fdose_map = mgr->CreateH2("dose_map", "Dose distribution", 500, 0, 50 * cm, 200, -10 * cm,
10 * cm, "cm", "cm");
fdose_map3d = mgr->CreateH3("dose_map_3d", "Dose distribution", 30, 0, 50 * cm, 20, -10 * cm,
10 * cm, 20, -10 * cm, 10 * cm, "cm", "cm", "cm");
fdose_prof =
mgr->CreateP1("dose_prof", "Dose distribution", 300, 0, 30 * cm, 0, 100 * MeV, "cm", "MeV");
fdose_map_prof = mgr->CreateP2("dose_map_prof", "Dose distribution", 300, 0, 30 * cm, 80, -4 * cm,
4 * cm, 0, 100 * MeV, "cm", "cm", "MeV");
if (fUseNtuple) {
mgr->CreateNtuple("Dose", "Dose distribution"); // ntuple Id = 0
mgr->CreateNtupleDColumn("pz");
mgr->CreateNtupleDColumn("px");
mgr->CreateNtupleDColumn("dose");
mgr->FinishNtuple();
}
G4cout << "Analysis::Book finished " << G4endl;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
Analysis::~Analysis() {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void Analysis::OpenFile(const G4String& fname)
{
G4AnalysisManager* mgr = G4AnalysisManager::Instance();
mgr->OpenFile(fname.c_str());
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void Analysis::Save()
{
G4AnalysisManager* mgr = G4AnalysisManager::Instance();
mgr->Write();
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void Analysis::Close(G4bool reset)
{
G4AnalysisManager* mgr = G4AnalysisManager::Instance();
mgr->CloseFile(reset);
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void Analysis::FillIncident(const G4ThreeVector& p)
{
if (!fincidentFlag) {
G4AnalysisManager* mgr = G4AnalysisManager::Instance();
mgr->FillH2(fincident_map, p.x(), p.y());
mgr->FillH1(fincident_x_hist, p.x());
fincidentFlag = true;
}
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void Analysis::FillDose(const G4ThreeVector& p, G4double dedx)
{
const G4double dxy = 10. * mm;
if (std::abs(p.y()) < dxy) {
G4AnalysisManager* mgr = G4AnalysisManager::Instance();
const G4double Z0 = 25. * cm;
mgr->FillH2(fdose_map, p.z() + Z0, p.x(), dedx / GeV);
mgr->FillP2(fdose_map_prof, p.z() + Z0, p.x(), dedx);
mgr->FillH3(fdose_map3d, p.z() + Z0, p.x(), p.y(), dedx / GeV);
if (std::abs(p.x()) < dxy) {
mgr->FillH1(fdose_hist, p.z() + Z0, dedx / GeV);
mgr->FillP1(fdose_prof, p.z() + Z0, dedx);
}
if (fUseNtuple) {
// the same fill frequency as H2 "dose_map"
mgr->FillNtupleDColumn(0, p.z() + Z0);
mgr->FillNtupleDColumn(1, p.x());
mgr->FillNtupleDColumn(2, dedx / GeV);
mgr->AddNtupleRow();
}
}
}
@@ -0,0 +1,119 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
/// @file DetectorConstruction.hh
/// @brief Define geometry
#include "DetectorConstruction.hh"
#include "VoxelParam.hh"
#include "VoxelSD.hh"
#include "G4Box.hh"
#include "G4LogicalVolume.hh"
#include "G4NistManager.hh"
#include "G4PVParameterised.hh"
#include "G4PVPlacement.hh"
#include "G4SystemOfUnits.hh"
#include "G4VisAttributes.hh"
typedef G4LogicalVolume G4LV;
typedef G4PVPlacement G4PVP;
typedef G4VisAttributes G4VA;
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
DetectorConstruction::DetectorConstruction() : flv_voxel(NULL) {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
DetectorConstruction::~DetectorConstruction() {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
G4VPhysicalVolume* DetectorConstruction::Construct()
{
G4NistManager* nistManager = G4NistManager::Instance();
G4VisAttributes* va;
// world volume
const G4double DXYZ_WORLD = 200. * cm;
G4Box* sld_world = new G4Box("world", DXYZ_WORLD / 2., DXYZ_WORLD / 2., DXYZ_WORLD / 2.);
G4Material* vacuum = nistManager->FindOrBuildMaterial("G4_Galactic");
G4LV* lv_world = new G4LogicalVolume(sld_world, vacuum, "world");
G4PVP* world = new G4PVPlacement(0, G4ThreeVector(), "AREA", lv_world, 0, false, 0);
// vis. attributes
va = new G4VA(G4Color(1., 1., 1.));
va->SetVisibility(false);
lv_world->SetVisAttributes(va);
// water phantom
const G4double DXY_PHANTOM = 20. * cm;
const G4double DZ_PHANTOM = 50. * cm;
G4Box* sld_phantom = new G4Box("phantom", DXY_PHANTOM / 2., DXY_PHANTOM / 2., DZ_PHANTOM / 2.);
G4Material* water = nistManager->FindOrBuildMaterial("G4_WATER");
G4LV* lv_phantom = new G4LogicalVolume(sld_phantom, water, "phantom");
va = new G4VA(G4Color(0., 1., 1.));
lv_phantom->SetVisAttributes(va);
new G4PVP(0, G4ThreeVector(), lv_phantom, "phantom", lv_world, false, 0);
// voxel planes
const G4double DXY_VXP = 20. * cm;
const G4double DZ_VXP = 1. * mm;
G4Box* sld_vxp = new G4Box("vxplane", DXY_VXP / 2., DXY_VXP / 2., DZ_VXP / 2.);
G4LV* lv_vxp = new G4LV(sld_vxp, water, "vxplane");
va = new G4VA(G4Color(1., 0., 0.));
va->SetVisibility(false);
lv_vxp->SetVisAttributes(va);
for (G4int iz = 0; iz < 500; iz++) {
G4double z0 = -DZ_PHANTOM / 2. + (iz + 0.5) * DZ_VXP;
new G4PVP(0, G4ThreeVector(0., 0., z0), lv_vxp, "vxplane", lv_phantom, false, 1000 + iz);
}
// voxel parameterized
G4Box* sld_voxel = new G4Box("voxel", 1., 1., 1.); // dummy
flv_voxel = new G4LV(sld_voxel, water, "voxel");
va = new G4VA(G4Color(0., 1., 1.));
va->SetVisibility(false);
flv_voxel->SetVisAttributes(va);
const G4int nvoxels = 100 * 100;
new G4PVParameterised("voxle", flv_voxel, lv_vxp, kUndefined, nvoxels, new VoxelParam());
return world;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void DetectorConstruction::ConstructSDandField()
{
flv_voxel->SetSensitiveDetector(new VoxelSD("voxel"));
}
@@ -0,0 +1,50 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
/// @file EventAction.cc
/// @brief Describe event actions
#include "EventAction.hh"
#include "Analysis.hh"
#include "G4Event.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
EventAction::EventAction() {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
EventAction::~EventAction() {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void EventAction::BeginOfEventAction(const G4Event*)
{
Analysis* myana = Analysis::GetAnalysis();
myana->ClearIncidentFlag();
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void EventAction::EndOfEventAction(const G4Event*) {}
@@ -0,0 +1,124 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
/// @file MedicalBeam.cc
/// @brief Define beam profile as primary generator
#include "MedicalBeam.hh"
#include "G4Event.hh"
#include "G4ParticleTable.hh"
#include "G4PrimaryVertex.hh"
#include "Randomize.hh"
#include <cmath>
using namespace CLHEP;
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
MedicalBeam::MedicalBeam()
: fparticle(0),
fkineticE(1. * MeV),
fsourcePosition(G4ThreeVector()),
fSSD(1. * m),
ffieldShape(MedicalBeam::kSQUARE),
ffieldR(10. * cm)
{
G4ParticleTable* particleTable = G4ParticleTable::GetParticleTable();
fparticle = particleTable->FindParticle("proton");
fkineticE = 200. * MeV;
fsourcePosition = G4ThreeVector(0., 0., -125. * cm);
fSSD = 100. * cm;
ffieldXY[0] = ffieldXY[1] = 5. * cm;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
MedicalBeam::~MedicalBeam() {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
G4ThreeVector MedicalBeam::GenerateBeamDirection() const
{
// uniform distribution in a limitted solid angle
G4double dr;
if (ffieldShape == MedicalBeam::kSQUARE) {
dr = std::sqrt(sqr(ffieldXY[0] / 2.) + sqr(ffieldXY[1] / 2.));
}
else {
dr = ffieldR;
}
G4double sin0 = dr / fSSD;
G4double cos0 = std::sqrt(1. - sqr(sin0));
G4double dcos = 0.;
G4double dsin, dphi, z;
G4double x = DBL_MAX;
G4double y = DBL_MAX;
G4double xmax, ymax;
if (ffieldShape == MedicalBeam::kSQUARE) {
xmax = ffieldXY[0] / 2. / fSSD;
ymax = ffieldXY[1] / 2. / fSSD;
}
else {
xmax = ymax = DBL_MAX - 1.;
}
while (!(std::abs(x) < xmax && std::abs(y) < ymax)) {
dcos = G4RandFlat::shoot(cos0, 1.);
dsin = std::sqrt(1. - sqr(dcos));
dphi = G4RandFlat::shoot(0., twopi);
x = std::cos(dphi) * dsin * dcos;
y = std::sin(dphi) * dsin * dcos;
}
z = dcos;
return G4ThreeVector(x, y, z);
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void MedicalBeam::GeneratePrimaries(G4Event* anEvent)
{
if (fparticle == NULL) return;
// create a new vertex
G4PrimaryVertex* vertex = new G4PrimaryVertex(fsourcePosition, 0. * ns);
// momentum
G4double mass = fparticle->GetPDGMass();
G4double p = std::sqrt(sqr(mass + fkineticE) - sqr(mass));
G4ThreeVector pmon = p * GenerateBeamDirection();
G4PrimaryParticle* primary = new G4PrimaryParticle(fparticle, pmon.x(), pmon.y(), pmon.z());
// set primary to vertex
vertex->SetPrimary(primary);
// set vertex to event
anEvent->AddPrimaryVertex(vertex);
}
@@ -0,0 +1,47 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
#include "Run.hh"
#include <atomic>
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
namespace
{
std::atomic_int g_ctr(0);
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
Run::Run()
{
fDummyCounter = g_ctr++;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void Run::Merge(const G4Run* other)
{
G4Run::Merge(other);
fDummyCounter += static_cast<const Run*>(other)->fDummyCounter;
}
@@ -0,0 +1,86 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
/// @file RunAction.cc
/// @brief Describe run actions
#include "RunAction.hh"
#include "Analysis.hh"
#include "Run.hh"
#include "toolx/mpi/wrmpi"
#include "G4MPImanager.hh"
#include "G4MPIscorerMerger.hh"
#include "G4Threading.hh"
#include <G4VUserMPIrunMerger.hh>
#include <stdio.h>
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
RunAction::RunAction(G4bool useNtuple, G4bool mergeNtuple) : G4UserRunAction()
{
// Book analysis in ctor
Analysis* myana = Analysis::GetAnalysis();
myana->SetUseNtuple(useNtuple);
myana->SetMergeNtuple(mergeNtuple);
G4cout << "Book analysis on rank: " << G4MPImanager::GetManager()->GetRank() << G4endl;
;
myana->Book();
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
RunAction::~RunAction() {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
G4Run* RunAction::GenerateRun()
{
return new Run;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void RunAction::BeginOfRunAction(const G4Run*)
{
G4cout << "RunAction::BeginOfRunAction" << G4endl;
Analysis* myana = Analysis::GetAnalysis();
// ntuples will be written on each rank
G4int rank = G4MPImanager::GetManager()->GetRank();
std::ostringstream fname;
fname << "dose-rank" << rank;
myana->OpenFile(fname.str());
// OpenFile triggeres creating collecting/sending ntuples objects;
// must be called at BeginOfRunAction
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void RunAction::EndOfRunAction(const G4Run*)
{
G4cout << "RunAction::EndOfRunAction" << G4endl;
Analysis* myana = Analysis::GetAnalysis();
myana->Save();
}
@@ -0,0 +1,255 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
/// @file RunActionMaster.cc
/// @brief Describe run actions
#include "RunActionMaster.hh"
#include "Analysis.hh"
#include "RunMerger.hh"
#include "G4MPImanager.hh"
#include "G4Threading.hh"
#include <stdio.h>
#ifndef G4MULTITHREADED
# include "G4RootMpiAnalysisManager.hh"
using G4AnalysisManager = G4RootMpiAnalysisManager;
#else
# include "G4RootAnalysisManager.hh"
using G4AnalysisManager = G4RootAnalysisManager;
#endif
#include "Run.hh"
#include "G4Filesystem.hh"
#include "G4MPIhistoMerger.hh"
#include "G4MPIntupleMerger.hh"
#include "G4MPIscorerMerger.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
RunActionMaster::RunActionMaster(G4bool useNtuple, G4bool mergeNtuple)
: G4UserRunAction(), fMPIntupleMerger(nullptr)
{
#ifndef G4MULTITHREADED
if (mergeNtuple && G4MPImanager::GetManager()->GetTotalSize() >= 2) {
// Activate MPI ntuple merging
// The merger must be created before creating G4AnalysisManager:
// (= the first call to G4AnalysisManager::Instance())
// and deleted only at the end of program
G4int nofReducedNtupleFiles = 0;
// Multiple reduced ntuple files are not yet supported
G4bool rowWise = false;
G4bool rowMode = true;
fMPIntupleMerger = new G4MPIntupleMerger(nofReducedNtupleFiles, rowWise, rowMode);
}
#endif
// Book analysis in ctor
Analysis* myana = Analysis::GetAnalysis();
myana->SetUseNtuple(useNtuple);
myana->SetMergeNtuple(mergeNtuple);
G4cout << "Book analysis on master on rank: " << G4MPImanager::GetManager()->GetRank() << G4endl;
;
myana->Book();
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
G4Run* RunActionMaster::GenerateRun()
{
return new Run;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
RunActionMaster::~RunActionMaster()
{
delete fMPIntupleMerger;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void RunActionMaster::BeginOfRunAction(const G4Run*)
{
G4cout << "RunActionMaster::BeginOfRunAction" << G4endl;
Analysis* myana = Analysis::GetAnalysis();
G4int rank = G4MPImanager::GetManager()->GetRank();
std::ostringstream fname;
fname << "dose-rank" << rank;
myana->OpenFile(fname.str());
// OpenFile triggeres creating collecting/sending ntuples objects;
// must be called at BeginOfRunAction
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void RunActionMaster::EndOfRunAction(const G4Run* arun)
{
G4cout << "RunActionMaster::EndOfRunAction" << G4endl;
// This is executed by master thread only. Worker threads have already
// merged their results into this master threads.
// We are going to merge the results via MPI for:
// 1. User-defined "Run" object
// 2. Command line scorers, if exists
// 3. G4Analysis objects
// For debugging purposes in the following we write out results twice:
// BEFORE and AFTER the merging, so that rank 0 actually
// writes two files, the one called "*rank000*" will contain the partial
// results only from rank #0,
// the file *merged* contains the reduction from all ranks.
// It should be very easy to adapt this code
const G4int rank = G4MPImanager::GetManager()->GetRank();
G4cout << "=====================================================" << G4endl;
G4cout << "Start EndOfRunAction for master thread in rank: " << rank << G4endl;
G4cout << "=====================================================" << G4endl;
if (!G4MPImanager::GetManager()->IsExtraWorker()) {
G4cout << "Go to merge on processing workers" << G4endl;
// Merging of G4Run object:
// All ranks > 0 merge to rank #0
RunMerger rm(static_cast<const Run*>(arun), G4MPImanager::kRANK_MASTER, 5);
G4int ver = 0; // Use 4 for lots of info
if (rank == 0 && ver == 0) ver = 1;
if (ver > 1) {
G4cout << "Before merge the Run object has test counter value: "
<< static_cast<const Run*>(arun)->GetCounter() << G4endl;
}
rm.SetVerbosity(ver);
rm.Merge();
if (ver > 1) {
G4cout << "After merge the Run object has test counter value: "
<< static_cast<const Run*>(arun)->GetCounter() << " (with 1 thread== number of ranks)"
<< G4endl;
}
// Merge of scorers
ver = 0;
if (G4ScoringManager::GetScoringManagerIfExist()) {
const auto scor = G4ScoringManager::GetScoringManager();
G4MPIscorerMerger sm(scor);
sm.SetVerbosity(ver);
// Debug!
auto debugme = [&scor]() {
for (size_t idx = 0; idx < scor->GetNumberOfMesh(); ++idx) {
const auto m = scor->GetMesh(idx);
const auto map = m->GetScoreMap();
std::for_each(
map.begin(), map.end(), [](const G4VScoringMesh::MeshScoreMap::value_type& e) {
G4cout << e.first << "(" << e.second << "):" << G4endl;
const auto data = e.second->GetMap();
for (auto it = data->begin(); it != data->end(); ++it) {
G4cout << it->first
<< " => G4StatDouble(n,sum_w,sum_w2,sum_wx,sum_wx2): " << it->second->n()
<< " " << it->second->sum_w() << " " << it->second->sum_w2() << " "
<< it->second->sum_wx() << " " << it->second->sum_wx2() << G4endl;
}
});
}
};
// Debug!
if (ver > 4) {
G4cout << "Before merging: Meshes dump" << G4endl;
debugme();
}
// Write partial scorers from single ranks *before* merging
// Do not rely on UI command to write out scorers, because rank-specific
// files will have same file name: need to add rank # to file name
if (true) {
for (size_t idx = 0; idx < scor->GetNumberOfMesh(); ++idx) {
const auto m = scor->GetMesh(idx);
const auto& mn = m->GetWorldName();
std::ostringstream fname;
fname << "scorer-" << mn << "-rank" << rank << ".csv";
scor->DumpAllQuantitiesToFile(mn, fname.str());
}
}
// Now reduce all scorers to rank #0
sm.Merge();
// Debug!
if (ver > 4) {
G4cout << "After merging: Meshes dump" << G4endl;
debugme();
}
// For rank #0 write out the merged files
if (rank == 0) {
for (size_t idx = 0; idx < scor->GetNumberOfMesh(); ++idx) {
const auto m = scor->GetMesh(idx);
const auto& mn = m->GetWorldName();
std::ostringstream fname;
fname << "scorer-" << mn << "-merged.csv";
scor->DumpAllQuantitiesToFile(mn, fname.str());
}
}
}
// Save histograms *before* MPI merging for rank #0
// Can be done only if MPI merging is not activated
if (rank == 0 && (fMPIntupleMerger == nullptr)) {
Analysis* myana = Analysis::GetAnalysis();
myana->Save();
myana->Close(false); // close without resetting histograms
// Rename file in another file
G4fs::rename("dose-rank0.root", "dose-rank0-part.root");
}
// Merge of g4analysis objects
G4cout << "Go to merge histograms " << G4endl;
ver = 1;
G4MPIhistoMerger hm(G4AnalysisManager::Instance());
hm.SetVerbosity(ver);
hm.Merge();
G4cout << "Done merge histograms " << G4endl;
}
else {
G4cout << "Skip merging on the extra worker" << G4endl;
}
// Save g4analysis objects to a file
Analysis* myana = Analysis::GetAnalysis();
myana->OpenFile("dose-rank0.root");
myana->Save();
myana->Close();
if (rank == 0) {
// Rename files
G4fs::rename("dose-rank0.root", "dose-merged.root");
if (fMPIntupleMerger == nullptr) {
G4fs::rename("dose-rank0-part.root", "dose-rank0.root");
}
}
G4cout << "===================================================" << G4endl;
G4cout << "End EndOfRunAction for master thread in rank: " << rank << G4endl;
G4cout << "===================================================" << G4endl;
}
@@ -0,0 +1,45 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
#include "RunMerger.hh"
#include "Run.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void RunMerger::Pack()
{
// Very imporant, here fMyRun is const!
// Register a user-data in the user Run class with MPI merger
InputUserData(const_cast<int*>(&(fMyRun->fDummyCounter)), MPI_INT, 1);
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
G4Run* RunMerger::UnPack()
{
// Create a dummy user-Run, used to contain data received via MPI
Run* aDummyRun = new Run;
OutputUserData(&(aDummyRun->fDummyCounter), MPI_INT, 1);
return aDummyRun;
}
@@ -0,0 +1,68 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
/// @file VoxelParam.cc
/// @brief Define voxel parameterization
#include "VoxelParam.hh"
#include "G4Box.hh"
#include "G4SystemOfUnits.hh"
#include "G4VPhysicalVolume.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
VoxelParam::VoxelParam() {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
VoxelParam::~VoxelParam() {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void VoxelParam::ComputeTransformation(const G4int id, G4VPhysicalVolume* vol) const
{
const G4int NX = 100;
G4int iy = id / NX;
G4int ix = id % NX;
const G4double dxyz = 1. * mm;
const G4double DXY = 10. * cm;
G4double x0 = -DXY / 2. + ix * dxyz;
G4double y0 = -DXY / 2. + iy * dxyz;
vol->SetTranslation(G4ThreeVector(x0, y0, 0.));
vol->SetRotation(0);
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void VoxelParam::ComputeDimensions(G4Box& box, const G4int, const G4VPhysicalVolume*) const
{
const G4double dxyz = 0.5 * mm;
box.SetXHalfLength(dxyz);
box.SetYHalfLength(dxyz);
box.SetZHalfLength(dxyz);
}
@@ -0,0 +1,79 @@
//
// ********************************************************************
// * License and Disclaimer *
// * *
// * The Geant4 software is copyright of the Copyright Holders of *
// * the Geant4 Collaboration. It is provided under the terms and *
// * conditions of the Geant4 Software License, included in the file *
// * LICENSE and available at http://cern.ch/geant4/license . These *
// * include a list of copyright holders. *
// * *
// * Neither the authors of this software system, nor their employing *
// * institutes,nor the agencies providing financial support for this *
// * work make any representation or warranty, express or implied, *
// * regarding this software system or assume any liability for its *
// * use. Please see the license in the file LICENSE and URL above *
// * for the full disclaimer and the limitation of liability. *
// * *
// * This code implementation is the result of the scientific and *
// * technical work of the GEANT4 collaboration. *
// * By using, copying, modifying or distributing the software (or *
// * any work based on the software) you agree to acknowledge its *
// * use in resulting scientific publications, and indicate your *
// * acceptance of all terms of the Geant4 Software license. *
// ********************************************************************
//
//
/// @file VoxelSD.cc
/// @brief Define detector sensitivity on voxels
// #include "G4MPImanager.hh"
#include "VoxelSD.hh"
#include "Analysis.hh"
#include "G4SDManager.hh"
#include "G4Step.hh"
#include "G4TouchableHistory.hh"
#include "G4Track.hh"
#include "G4VTouchable.hh"
#include "Randomize.hh"
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
VoxelSD::VoxelSD(const G4String& name) : G4VSensitiveDetector(name)
{
G4SDManager::GetSDMpointer()->AddNewDetector(this);
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
VoxelSD::~VoxelSD() {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
G4bool VoxelSD::ProcessHits(G4Step* astep, G4TouchableHistory*)
{
G4ThreeVector x0 = astep->GetPreStepPoint()->GetPosition();
G4ThreeVector x1 = astep->GetPostStepPoint()->GetPosition();
G4int tid = astep->GetTrack()->GetTrackID();
G4int iz = astep->GetPreStepPoint()->GetTouchable()->GetReplicaNumber(1);
Analysis* myana = Analysis::GetAnalysis();
// incident position
if (tid == 1 && iz == 1000) { // scored @ first layer
myana->FillIncident(x0);
}
// energy deposit
G4ThreeVector p = G4UniformRand() * (x1 - x0) + x0; // position sampling
G4double edep = astep->GetTotalEnergyDeposit();
myana->FillDose(p, edep);
return true;
}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void VoxelSD::Initialize(G4HCofThisEvent*) {}
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
void VoxelSD::EndOfEvent(G4HCofThisEvent*) {}