Import Geant4 10.3.0 source tree

2016-12-09 12:35:28 +01:00
parent 4ec577e5c4
commit a3452e42ac
3514 changed files with 210500 additions and 89628 deletions
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+//
+// ********************************************************************
+// * License and Disclaimer                                           *
+// *                                                                  *
+// * The  Geant4 software  is  copyright of the Copyright Holders  of *
+// * the Geant4 Collaboration.  It is provided  under  the terms  and *
+// * conditions of the Geant4 Software License,  included in the file *
+// * LICENSE and available at  http://cern.ch/geant4/license .  These *
+// * include a list of copyright holders.                             *
+// *                                                                  *
+// * Neither the authors of this software system, nor their employing *
+// * institutes,nor the agencies providing financial support for this *
+// * work  make  any representation or  warranty, express or implied, *
+// * regarding  this  software system or assume any liability for its *
+// * use.  Please see the license in the file  LICENSE  and URL above *
+// * for the full disclaimer and the limitation of liability.         *
+// *                                                                  *
+// * This  code  implementation is the result of  the  scientific and *
+// * technical work of the GEANT4 collaboration.                      *
+// * By using,  copying,  modifying or  distributing the software (or *
+// * any work based  on the software)  you  agree  to acknowledge its *
+// * use  in  resulting  scientific  publications,  and indicate your *
+// * acceptance of all terms of the Geant4 Software license.          *
+// ********************************************************************
+//
+// $Id: G4DNADamage.cc 85152 2014-10-24 16:07:37Z matkara $
+//
+#include "G4DNADamage.hh"
+#include "G4UnitsTable.hh"
+
+G4ThreadLocal G4DNADamage* G4DNADamage::fpInstance(0);
+
+G4DNAIndirectHit::G4DNAIndirectHit(const G4String& baseName,
+                                   const G4Molecule* molecule,
+                                   const G4ThreeVector& position,
+                                   G4double time) :
+    G4VDNAHit(), fpMolecule(molecule)
+{
+  fBaseName = baseName;
+  fPosition = position;
+  fTime = time;
+}
+
+G4DNAIndirectHit::~G4DNAIndirectHit()
+{
+  if (fpMolecule) delete fpMolecule;
+  fpMolecule = 0;
+}
+
+void G4DNAIndirectHit::Print()
+{
+  G4cout << "Reaction : " << fpMolecule->GetName() << " + " << fBaseName
+         << " at position : " << G4BestUnit(fPosition, "Length")
+         << " and time : " << G4BestUnit(fTime, "Time") << G4endl;
+}
+
+G4DNADamage* G4DNADamage::Instance()
+{
+  if (!fpInstance) new G4DNADamage();
+
+  return fpInstance;
+}
+
+G4DNADamage::G4DNADamage()
+{
+  fJustCountDamage = false;
+  fNIndirectDamage = 0;
+  fpInstance = this;
+}
+
+G4DNADamage::~G4DNADamage()
+{
+  for (int i = 0; i < (int) fIndirectHits.size(); i++)
+  {
+    if (fIndirectHits[i]) delete fIndirectHits[i];
+  }
+  fIndirectHits.clear();
+}
+
+void G4DNADamage::DeleteInstance()
+{
+  if (fpInstance) delete fpInstance;
+  fpInstance = 0;
+}
+
+void G4DNADamage::Reset()
+{
+  fNIndirectDamage = 0;
+  for (int i = 0; i < (int) fIndirectHits.size(); i++)
+  {
+    if (fIndirectHits[i]) delete fIndirectHits[i];
+  }
+  fIndirectHits.clear();
+}
+
+void G4DNADamage::AddIndirectDamage(const G4String& baseName,
+                                    const G4Molecule* molecule,
+                                    const G4ThreeVector& position,
+                                    G4double time)
+{
+  if (fJustCountDamage)
+  {
+    fNIndirectDamage++;
+    return;
+  }
+
+  G4DNAIndirectHit* indirectHit = 0;
+  std::map<G4Molecule, const G4Molecule*>::iterator it = 
+   fMolMap.find(*molecule);
+
+  if (it == fMolMap.end())
+  {
+    G4Molecule* mol(0);
+    fMolMap[*molecule] = (mol = new G4Molecule(*molecule));
+    indirectHit = new G4DNAIndirectHit(baseName, mol, position, time);
+  }
+  else
+  {
+    indirectHit = new G4DNAIndirectHit(baseName, it->second, position, time);
+  }
+  fIndirectHits.push_back(indirectHit);
+}