Import Geant4 10.3.0 source tree
This commit is contained in:
Gabriele Cosmo
@@ -23,10 +23,10 @@
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// $Id: G4DNAChemistryManager.hh 93883 2015-11-03 08:25:04Z gcosmo $
|
||||
// $Id: G4DNAChemistryManager.hh 100802 2016-11-02 14:55:27Z gcosmo $
|
||||
//
|
||||
|
||||
// Author: Mathieu Karamitros, kara@cenbg.in2p3.fr
|
||||
// Author: Mathieu Karamitros
|
||||
//
|
||||
// The code is developed in the framework of the ESA AO7146
|
||||
//
|
||||
|
||||
@@ -0,0 +1,129 @@
|
||||
//
|
||||
// ********************************************************************
|
||||
// * License and Disclaimer *
|
||||
// * *
|
||||
// * The Geant4 software is copyright of the Copyright Holders of *
|
||||
// * the Geant4 Collaboration. It is provided under the terms and *
|
||||
// * conditions of the Geant4 Software License, included in the file *
|
||||
// * LICENSE and available at http://cern.ch/geant4/license . These *
|
||||
// * include a list of copyright holders. *
|
||||
// * *
|
||||
// * Neither the authors of this software system, nor their employing *
|
||||
// * institutes,nor the agencies providing financial support for this *
|
||||
// * work make any representation or warranty, express or implied, *
|
||||
// * regarding this software system or assume any liability for its *
|
||||
// * use. Please see the license in the file LICENSE and URL above *
|
||||
// * for the full disclaimer and the limitation of liability. *
|
||||
// * *
|
||||
// * This code implementation is the result of the scientific and *
|
||||
// * technical work of the GEANT4 collaboration. *
|
||||
// * By using, copying, modifying or distributing the software (or *
|
||||
// * any work based on the software) you agree to acknowledge its *
|
||||
// * use in resulting scientific publications, and indicate your *
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// $Id: G4DNADamages.hh 100781 2016-11-02 11:50:20Z matkara $
|
||||
//
|
||||
// Author: Mathieu Karamitros
|
||||
|
||||
// The code is developed in the framework of the ESA AO7146
|
||||
//
|
||||
// We would be very happy hearing from you, send us your feedback! :)
|
||||
//
|
||||
// In order for Geant4-DNA to be maintained and still open-source,
|
||||
// article citations are crucial.
|
||||
// If you use Geant4-DNA chemistry and you publish papers about your software,
|
||||
// in addition to the general paper on Geant4-DNA:
|
||||
//
|
||||
// Int. J. Model. Simul. Sci. Comput. 1 (2010) 157–178
|
||||
//
|
||||
// we would be very happy if you could please also cite the following
|
||||
// reference papers on chemistry:
|
||||
//
|
||||
// J. Comput. Phys. 274 (2014) 841-882
|
||||
// Prog. Nucl. Sci. Tec. 2 (2011) 503-508
|
||||
|
||||
#ifndef G4DNADAMAGE_HH
|
||||
#define G4DNADAMAGE_HH 1
|
||||
|
||||
#include "G4Molecule.hh"
|
||||
|
||||
class G4VDNAHit
|
||||
{
|
||||
public :
|
||||
G4VDNAHit(){;}
|
||||
virtual ~G4VDNAHit(){;}
|
||||
};
|
||||
|
||||
class G4DNAIndirectHit : public G4VDNAHit
|
||||
{
|
||||
public :
|
||||
G4DNAIndirectHit(const G4String& baseName, const G4Molecule* molecule,
|
||||
const G4ThreeVector& position, G4double time);
|
||||
virtual ~G4DNAIndirectHit();
|
||||
|
||||
inline const G4Molecule* GetMolecule() {return fpMolecule;}
|
||||
inline const G4ThreeVector& GetPosition() {return fPosition;}
|
||||
inline const G4String& GetBaseName() {return fBaseName;}
|
||||
inline double GetTime() {return fTime;}
|
||||
|
||||
void Print();
|
||||
|
||||
protected :
|
||||
const G4Molecule* fpMolecule;
|
||||
G4ThreeVector fPosition;
|
||||
G4double fTime;
|
||||
G4String fBaseName;
|
||||
};
|
||||
|
||||
class G4DNADamage
|
||||
{
|
||||
public:
|
||||
static G4DNADamage* Instance();
|
||||
static void DeleteInstance();
|
||||
|
||||
virtual void Reset();
|
||||
|
||||
//void AddDirectDamage();
|
||||
virtual void AddIndirectDamage(const G4String& baseName,
|
||||
const G4Molecule* molecule,
|
||||
const G4ThreeVector& position,
|
||||
double time);
|
||||
|
||||
inline const std::vector<G4DNAIndirectHit*>* GetIndirectHits();
|
||||
inline virtual int GetNIndirectHits() const
|
||||
{
|
||||
if(fJustCountDamage)
|
||||
return fNIndirectDamage;
|
||||
|
||||
return fIndirectHits.size();
|
||||
}
|
||||
|
||||
inline virtual void SetOnlyCountDamage(bool flag = true)
|
||||
{
|
||||
fJustCountDamage = flag;
|
||||
}
|
||||
|
||||
inline virtual bool OnlyCountDamage() const
|
||||
{
|
||||
return fJustCountDamage;
|
||||
}
|
||||
|
||||
protected :
|
||||
G4DNADamage();
|
||||
static G4ThreadLocal G4DNADamage* fpInstance;
|
||||
virtual ~G4DNADamage();
|
||||
|
||||
G4bool fJustCountDamage;
|
||||
G4int fNIndirectDamage;
|
||||
std::vector<G4DNAIndirectHit*> fIndirectHits;
|
||||
std::map<G4Molecule, const G4Molecule*> fMolMap;
|
||||
};
|
||||
|
||||
inline const std::vector<G4DNAIndirectHit*>* G4DNADamage::GetIndirectHits()
|
||||
{
|
||||
return &fIndirectHits;
|
||||
}
|
||||
|
||||
#endif // G4DNADAMAGES_HH
|
||||
@@ -23,11 +23,9 @@
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// $Id: G4DNAMolecularMaterial.hh 85244 2014-10-27 08:24:13Z gcosmo $
|
||||
// $Id: G4DNAMolecularMaterial.hh 101354 2016-11-15 08:27:51Z gcosmo $
|
||||
//
|
||||
// Author: Mathieu Karamitros, kara@cenbg.in2p3.fr
|
||||
|
||||
// The code is developed in the framework of the ESA AO7146
|
||||
// Author: Mathieu Karamitros
|
||||
//
|
||||
// We would be very happy hearing from you, send us your feedback! :)
|
||||
//
|
||||
@@ -54,6 +52,7 @@
|
||||
#include "G4VStateDependent.hh"
|
||||
|
||||
class G4Material;
|
||||
class G4MolecularConfiguration;
|
||||
|
||||
struct CompareMaterial
|
||||
{
|
||||
@@ -75,16 +74,32 @@ public:
|
||||
void Clear();
|
||||
|
||||
virtual G4bool Notify(G4ApplicationState requestedState);
|
||||
|
||||
//----------------------------------------------------------------------------
|
||||
|
||||
inline const std::vector<ComponentMap>* GetMassFractionTable() const;
|
||||
inline const std::vector<ComponentMap>* GetDensityTable() const;
|
||||
// const std::vector<double>* GetMassFractionTableFor(const G4Material*) const;
|
||||
const std::vector<double>* GetDensityTableFor(const G4Material*) const;
|
||||
const std::vector<double>* GetNumMolPerVolTableFor(const G4Material*) const;
|
||||
|
||||
inline const std::vector<ComponentMap>* GetMassFractionTable() const{
|
||||
return fpCompFractionTable;
|
||||
}
|
||||
inline const std::vector<ComponentMap>* GetDensityTable() const{
|
||||
return fpCompDensityTable;
|
||||
}
|
||||
|
||||
//----------------------------------------------------------------------------
|
||||
|
||||
G4MolecularConfiguration* GetMolecularConfiguration(const G4Material*) const;
|
||||
void SetMolecularConfiguration(const G4Material*,
|
||||
G4MolecularConfiguration*);
|
||||
void SetMolecularConfiguration(const G4Material*,
|
||||
const G4String&);
|
||||
|
||||
void SetMolecularConfiguration(const G4String& materialName,
|
||||
const G4String& molUserIF);
|
||||
|
||||
protected:
|
||||
static G4DNAMolecularMaterial* fInstance;
|
||||
// static G4ThreadLocal G4DNAMolecularMaterial* fInstance;
|
||||
G4DNAMolecularMaterial();
|
||||
G4DNAMolecularMaterial(const G4DNAMolecularMaterial& right);
|
||||
G4DNAMolecularMaterial& operator=(const G4DNAMolecularMaterial&);
|
||||
@@ -113,21 +128,12 @@ protected:
|
||||
mutable std::map<const G4Material*, std::vector<double>*, CompareMaterial>
|
||||
fAskedNumPerVolTable;
|
||||
mutable std::map<const G4Material*, bool, CompareMaterial> fWarningPrinted;
|
||||
|
||||
std::map<int /*Material ID*/,
|
||||
G4MolecularConfiguration*> fMaterialToMolecularConf;
|
||||
|
||||
G4bool fIsInitialized;
|
||||
size_t fNMaterials;
|
||||
};
|
||||
|
||||
inline const std::vector<ComponentMap>*
|
||||
G4DNAMolecularMaterial::GetMassFractionTable() const
|
||||
{
|
||||
return fpCompFractionTable;
|
||||
}
|
||||
|
||||
inline const std::vector<ComponentMap>*
|
||||
G4DNAMolecularMaterial::GetDensityTable() const
|
||||
{
|
||||
return fpCompDensityTable;
|
||||
}
|
||||
|
||||
#endif // G4DNAMolecularMaterial_HH
|
||||
|
||||
@@ -23,9 +23,9 @@
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// $Id: G4DNAMolecularReactionTable.hh 94218 2015-11-09 08:24:48Z gcosmo $
|
||||
// $Id: G4DNAMolecularReactionTable.hh 100802 2016-11-02 14:55:27Z gcosmo $
|
||||
//
|
||||
// Author: Mathieu Karamitros, kara@cenbg.in2p3.fr
|
||||
// Author: Mathieu Karamitros
|
||||
|
||||
// The code is developed in the framework of the ESA AO7146
|
||||
//
|
||||
|
||||
@@ -23,7 +23,7 @@
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// Author: Mathieu Karamitros, kara@cenbg.in2p3.fr
|
||||
// Author: Mathieu Karamitros
|
||||
|
||||
// The code is developed in the framework of the ESA AO7146
|
||||
//
|
||||
|
||||
@@ -23,7 +23,7 @@
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// Author: Mathieu Karamitros, kara@cenbg.in2p3.fr
|
||||
// Author: Mathieu Karamitros
|
||||
|
||||
// The code is developed in the framework of the ESA AO7146
|
||||
//
|
||||
|
||||
@@ -23,9 +23,9 @@
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// $Id: G4VDNAReactionModel.hh 91584 2015-07-27 13:01:48Z gcosmo $
|
||||
// $Id: G4VDNAReactionModel.hh 100802 2016-11-02 14:55:27Z gcosmo $
|
||||
//
|
||||
// Author: Mathieu Karamitros, kara@cenbg.in2p3.fr
|
||||
// Author: Mathieu Karamitros
|
||||
|
||||
// The code is developed in the framework of the ESA AO7146
|
||||
//
|
||||
|
||||
@@ -23,7 +23,7 @@
|
||||
// * acceptance of all terms of the Geant4 Software license. *
|
||||
// ********************************************************************
|
||||
//
|
||||
// Author: Mathieu Karamitros, kara@cenbg.in2p3.fr
|
||||
// Author: Mathieu Karamitros
|
||||
|
||||
// The code is developed in the framework of the ESA AO7146
|
||||
//
|
||||
|
||||
Reference in New Issue
Block a user