Import Geant4 11.2.0 source tree

2023-12-08 10:43:34 +01:00
parent dd1f179cda
commit 860a2b92bf
3962 changed files with 139318 additions and 164259 deletions
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+//
+// ********************************************************************
+// * License and Disclaimer                                           *
+// *                                                                  *
+// * The  Geant4 software  is  copyright of the Copyright Holders  of *
+// * the Geant4 Collaboration.  It is provided  under  the terms  and *
+// * conditions of the Geant4 Software License,  included in the file *
+// * LICENSE and available at  http://cern.ch/geant4/license .  These *
+// * include a list of copyright holders.                             *
+// *                                                                  *
+// * Neither the authors of this software system, nor their employing *
+// * institutes,nor the agencies providing financial support for this *
+// * work  make  any representation or  warranty, express or implied, *
+// * regarding  this  software system or assume any liability for its *
+// * use.  Please see the license in the file  LICENSE  and URL above *
+// * for the full disclaimer and the limitation of liability.         *
+// *                                                                  *
+// * This  code  implementation is the result of  the  scientific and *
+// * technical work of the GEANT4 collaboration.                      *
+// * By using,  copying,  modifying or  distributing the software (or *
+// * any work based  on the software)  you  agree  to acknowledge its *
+// * use  in  resulting  scientific  publications,  and indicate your *
+// * acceptance of all terms of the Geant4 Software license.          *
+// ********************************************************************
+//
+//
+//
+/// \file AnalysisHandler.hh
+/// \brief Definition of the AnalysisHandler class
+
+#ifndef AnalysisHandler_h
+#define AnalysisHandler_h 1
+
+#include <memory>
+#include "ScanDamage.hh"
+#include "TLKModel.hh"
+#include "LEMIVModel.hh"
+#include "BelovModel.hh"
+
+class AnalysisHandler
+{
+    public:
+    AnalysisHandler(/* args */);
+    ~AnalysisHandler() = default;
+    void SetThresholdEnergy(double e);
+    void GetAllDamageAndScanSB();
+    void GiveMeSBs();
+    void ApplyDNAModel(const std::string dnamodel);
+    void SetBpForDSB(unsigned int pVal);
+    void SetParametersForTLKModel(double pLambda1 = 3.0,double pLambda2=0.03, 
+                                    double pBeta1=0.01, double pBeta2=0.06,double pEta=0.002);
+    void SetParametersForLEMIVModel(double pLoopLength=2e6,double pFunrej=0,
+                                    double pTfast=0.24,double pTslow=2.81);
+    void CreateSDD(std::string filename);
+private:
+    ///void GetDoseFromEdep();
+    std::unique_ptr<ScanDamage> fScanDamage;
+    std::unique_ptr<TLKModel> fTLKModel;
+    std::unique_ptr<LEMIVModel> fLEMIVModel;
+    std::unique_ptr<BelovModel> fBelovModel;
+    std::vector<Damage> fAllDamage;
+    
+    std::pair<float,float> fNsDSBandError = {0,0};
+    std::pair<float,float> fNcDSBandError = {0,0};
+    std::pair<float,float> fNDSBandError = {0,0};
+    std::pair<float,float> fNDSBdirandError = {0,0}; // DSB has contribution from at least one direct  damage
+    std::pair<float,float> fNDSBIndandError = {0,0}; // DSB has contribution from at least one indirect  damage
+    std::pair<float,float> fNDSBdirIandError = {0,0}; // DSB has contribution from both direct and indirect damage
+    std::pair<float,float> fNSSBandError = {0,0};
+    std::pair<float,float> fNSBandError = {0,0};
+    std::pair<float,float> fNdirSBandError = {0,0};
+    std::pair<float,float> fNindirSBandError = {0,0};
+
+    bool fIsSBScanned = false;
+    // num of bp to consider a DSB for the MakeCluster function
+	// default value is 10
+	unsigned int fBpForDSB{10};
+    // store dose deposited in nucleus cell
+	double fDose{0};
+    //TLK: Compute a SF Curve
+    double pTLKDoseMax{0}, pTLKDeltaDose{0};
+    //LEMIV: compute fraction of unrejoined DSB up to pLEMIVTimeMax (h) and  pLEMIVDeltaTime steps
+    double pLEMIVtimeMax{0}, pLEMIVdeltaTime{0};
+
+    double fNBp{0};// number of base pairs
+    double fEdepInNucleus{0}; // eV
+    double fNucleusVolume{0};
+
+    std::map<int,unsigned long long int> fChromosomeBpMap; //Store number of Bp in each Chomosomes;
+};
+
+#endif