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This commit is contained in:
Gabriele Cosmo
2023-12-08 10:43:34 +01:00
parent dd1f179cda
commit 860a2b92bf
3962 changed files with 139318 additions and 164259 deletions
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examples/advanced/doiPET/CMakeLists.txt
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@@ -2,7 +2,7 @@
#----------------------------------------------------------------------------
# Setup the project
#
cmake_minimum_required(VERSION 3.16...3.21)
cmake_minimum_required(VERSION 3.16...3.27)
project(doiPET)
#----------------------------------------------------------------------------
examples/advanced/doiPET/History
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@@ -4,6 +4,18 @@ See `CONTRIBUTING.rst` for details of **required** info/format for each entry,
which **must** added in reverse chronological order (newest at the top). It must **not**
be used as a substitute for writing good git commit messages!
## 2023-11-15 I. Hrivnacova (doiPET-V11-01-01)
- Updated vis.mac:
- Changed "/vis/open XYZ [600x600-0+0]" to "/vis/open" to allow run-time choices
and simplified comments.
## 2023-11-10 Alberto Ribon (doiPET-V11-01-00)
- In all macro files, introduced the UI command
'/process/had/rdm/thresholdForVeryLongDecayTime 1.0e+60 year'
to allow all radioactive decays (including the very long ones).
This is necessary since G4 11.2, being 1 year the default time
threshold above which the decays are ignored.
## 2022-09-08 Susanna Guatelli (doiPET-V11-00-01)
- Ranecu engine removed, default engine used now
examples/advanced/doiPET/doiPET.out
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@@ -11,7 +11,7 @@ Environment variable "G4FORCE_RUN_MANAGER_TYPE" enabled with value == Serial. Fo
**************************************************************
Geant4 version Name: geant4-11-01-ref-06 (30-June-2023)
Geant4 version Name: geant4-11-02-ref-00 (8-December-2023)
Copyright : Geant4 Collaboration
References : NIM A 506 (2003), 250-303
: IEEE-TNS 53 (2006), 270-278
@@ -528,9 +528,15 @@ Auger electron emission enabled 1
Check EM cuts disabled for atomic de-excitation 1
Use Bearden atomic level energies 0
Use ANSTO fluorescence model 0
Threshold for very long decay time at rest 3.171e+10 y
Threshold for very long decay time at rest 1e+60 y
======================================================================
====================================================================
HADRONIC PROCESSES SUMMARY (verbose level 1)
-------------------------------------------------------------------------
Hadronic Processes for GenericIon
Process: Radioactivation
msc: for GenericIon SubType= 10
===== EM models for the G4Region DefaultRegionForTheWorld ======
UrbanMsc : Emin= 0 eV Emax= 100 TeV
@@ -745,23 +751,6 @@ hPairProd: for pi- XStype:1 SubType=4
Sampling table 20x1001 from 1.11656 GeV to 100 TeV
===== EM models for the G4Region DefaultRegionForTheWorld ======
hPairProd : Emin= 0 eV Emax= 100 TeV ModifiedMephi
======================================================================
====== Radioactive Decay Physics Parameters =======
======================================================================
min MeanLife (from G4NuclideTable) 1 ns
Max life time (from G4DeexPrecoParameters) 1000 ps
Internal e- conversion flag 1
Stored internal conversion coefficients 1
Enabled atomic relaxation mode 1
Enable correlated gamma emission 0
Max 2J for sampling of angular correlations 10
Atomic de-excitation enabled 1
Auger electron emission enabled 1
Check EM cuts disabled for atomic de-excitation 1
Use Bearden atomic level energies 0
Use ANSTO fluorescence model 0
Threshold for very long decay time at rest 3.171e+10 y
======================================================================
Region <DefaultRegionForTheWorld> -- -- appears in <world_physicalV> world volume
This region is in the mass world.
@@ -817,14 +806,14 @@ G4GeometryManager::ReportVoxelStats -- Voxel Statistics
Voxelisation: top CPU users:
Percent Total CPU System CPU Memory Volume
------- ---------- ---------- -------- ----------
100.00 0.01 0.00 406k airBox_logicalV
0.00 0.00 0.00 69k world_logicalV
100.00 0.01 0.00 69k world_logicalV
0.00 0.00 0.00 406k airBox_logicalV
Voxelisation: top memory users:
Percent Memory Heads Nodes Pointers Total CPU Volume
------- -------- ------ ------ -------- ---------- ----------
85.51 406k 931 5788 8898 0.01 airBox_logicalV
14.49 68k 182 683 3080 0.00 world_logicalV
85.51 406k 931 5788 8898 0.00 airBox_logicalV
14.49 68k 182 683 3080 0.01 world_logicalV
### Run 0 starts.
### Begin of Run 0 start.
@@ -866,7 +855,7 @@ N=17 V[N]={87900885656017340, 2136126672992718976, 110623987125446578, 176001763
Run terminated.
Run Summary
Number of events processed : 1000000
User=106.510000s Real=109.183284s Sys=1.390000s
User=116.130000s Real=148.878840s Sys=1.870000s
### End of Run (1000000 events)
G4 kernel has come to Quit state.
@@ -887,14 +876,14 @@ G4RNGHelper object is deleted.
================== Deleting memory pools ===================
Pool ID '20G4NavigationLevelRep', size : 0.0183 MB
Pool ID '24G4ReferenceCountedHandleIvE', size : 0.000961 MB
Pool ID '17G4DynamicParticle', size : 0.0115 MB
Pool ID '17G4DynamicParticle', size : 0.0125 MB
Pool ID '16G4SmartVoxelNode', size : 0.201 MB
Pool ID '17G4SmartVoxelProxy', size : 0.116 MB
Pool ID '7G4Event', size : 0.000961 MB
Pool ID '15G4PrimaryVertex', size : 0.000961 MB
Pool ID '17G4PrimaryParticle', size : 0.000961 MB
Pool ID '19G4ElectronOccupancy', size : 0.000961 MB
Pool ID '7G4Track', size : 0.0221 MB
Pool ID '7G4Track', size : 0.025 MB
Pool ID '18G4TouchableHistory', size : 0.00192 MB
Pool ID '15G4CountedObjectIvE', size : 0.000961 MB
Number of memory pools allocated: 12 of which, static: 0
examples/advanced/doiPET/run.mac
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@@ -25,6 +25,9 @@
/run/initialize
/run/verbose 2
# Set a very high time threshold to allow all decays to happen
/process/had/rdm/thresholdForVeryLongDecayTime 1.0e+60 year
/gps/particle ion
/gps/ion 9 18 0 0 # F-18
#/gps/particle e+
examples/advanced/doiPET/run_NECR.mac
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@@ -20,6 +20,9 @@
/run/initialize
/run/verbose 2
# Set a very high time threshold to allow all decays to happen
/process/had/rdm/thresholdForVeryLongDecayTime 1.0e+60 year
/gps/particle ion
/gps/ion 9 18 0 0 # F-18
#/gps/particle e+
examples/advanced/doiPET/run_imageQualityPhantom_smallAnimal.mac
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@@ -13,6 +13,8 @@
/run/initialize
/run/verbose 2
# Set a very high time threshold to allow all decays to happen
/process/had/rdm/thresholdForVeryLongDecayTime 1.0e+60 year
#### The activity strength of all hot regions is the same. Only volume consideration is used to calculate the intensity
examples/advanced/doiPET/run_imageQualityPhantom_wholeBody.mac
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@@ -13,6 +13,8 @@
/run/initialize
/run/verbose 2
# Set a very high time threshold to allow all decays to happen
/process/had/rdm/thresholdForVeryLongDecayTime 1.0e+60 year
#### the activity distribution of the hot source to the background (BG) is 4:1. The activity distribution ratio is done by considering the volume of the phantoms
examples/advanced/doiPET/run_normalization.mac
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@@ -19,6 +19,9 @@
/run/initialize
/run/verbose 2
# Set a very high time threshold to allow all decays to happen
/process/had/rdm/thresholdForVeryLongDecayTime 1.0e+60 year
/gps/particle ion
/gps/ion 9 18 0 0 # F-18
#/gps/particle e+
examples/advanced/doiPET/run_sensitivity.mac
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@@ -25,6 +25,9 @@
/run/initialize
/run/verbose 2
# Set a very high time threshold to allow all decays to happen
/process/had/rdm/thresholdForVeryLongDecayTime 1.0e+60 year
/gps/particle ion
/gps/ion 9 18 0 0 # F-18
#/gps/particle e+
examples/advanced/doiPET/run_spatialResolution.mac
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@@ -19,6 +19,9 @@
/run/initialize
/run/verbose 2
# Set a very high time threshold to allow all decays to happen
/process/had/rdm/thresholdForVeryLongDecayTime 1.0e+60 year
/gps/particle ion
/gps/ion 9 18 0 0 # F-18
/gps/energy 0
examples/advanced/doiPET/vis.mac
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@@ -2,25 +2,10 @@
# of the B3 example when running in interactive mode
#
# Use these open statements to open selected visualization
#
# Use this open statement to create an OpenGL view:
/vis/open OGL 600x600-0+0
#
# Use this open statement to create an OpenInventor view:
#/vis/open OIX
#
# Use this open statement to create a .prim file suitable for
# viewing in DAWN:
#/vis/open DAWNFILE
#
# Use this open statement to create a .heprep file suitable for
# viewing in HepRApp:
#/vis/open HepRepFile
#
# Use this open statement to create a .wrl file suitable for
# viewing in a VRML viewer:
#/vis/open VRML2FILE
# Open a viewer
/vis/open
# This opens the default viewer - see examples/basic/B1/vis.mac for a
# more comprehensive overview of options. Also the documentation.
#
# Disable auto refresh and quieten vis messages whilst scene and
# trajectories are established: