Import Geant4 11.0.0 source tree
This commit is contained in:
Gabriele Cosmo
committed by
Ben Morgan
Ben Morgan
parent
6399a014b6
commit
80e2389dd8
@@ -42,12 +42,13 @@
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#define doiPETActionInitialization_h 1
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#include "G4VUserActionInitialization.hh"
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#include "doiPETAnalysis.hh"
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//
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class doiPETAnalysis;
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class doiPETActionInitialization : public G4VUserActionInitialization
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{
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public:
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doiPETActionInitialization();
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doiPETActionInitialization(doiPETAnalysis* );
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virtual ~doiPETActionInitialization();
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virtual void BuildForMaster() const;
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@@ -56,6 +57,7 @@ public:
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//virtual G4VSteppingVerbose* InitializeSteppingVerbose() const;
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private:
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doiPETAnalysis* analysis;
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// doiPETDetectorConstruction* fDetector;
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};
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//
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@@ -54,23 +54,10 @@
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#include <iterator>
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#include <vector>
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#include <algorithm>
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#include "G4AnalysisManager.hh"
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#ifdef USEROOT
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#pragma GCC diagnostic push
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#pragma GCC diagnostic ignored "-Wshadow"
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#include "TRandom3.h"
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#include "TFile.h"
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#include "TNtuple.h"
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#include "g4root.hh"
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#include "TROOT.h"
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#include "TFile.h"
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#include "TH1.h"
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#include "TH2.h"
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#include "TTree.h"
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#include "TLeaf.h"
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#include "TSystem.h"
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#pragma GCC diagnostic pop
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#endif
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// Define the total number of columns in the ntuple
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const G4int MaxNtCol = 17;
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class doiPETAnalysisMessenger;
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@@ -96,17 +83,19 @@ public:
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void GetParentParticleName(G4String);
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void GetSizeOfDetector (G4double, G4double, G4double);
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void GetScatterIndexInPhantom(G4double);
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void SetScatterIndexInPhantom(G4int);
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void SetSourcePosition(G4ThreeVector);//
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void SetEventID(G4int);
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void BlurringParameters();
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void GetTimeOfAnnihilation(G4double);
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void PMTPosition();
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void AngerLogic(G4int, G4int, G4int, G4double, G4double, G4double, G4double);
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void AngerLogic(G4double, G4double, G4double, G4double, G4double, G4bool);
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void ReadReflectorPattern();
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void PrepareDOILookUpTable(G4String);
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void SetActivity(G4double);
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void SetIsotopeHalfLife(G4double);
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@@ -117,14 +106,28 @@ public:
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G4double QuantumEffifciency(G4double, G4int, G4int);
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void ReadOut(G4int, G4int, G4double, G4double, G4ThreeVector, G4double);
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//G4ROOT
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void book(); // booking the ROOT file
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void FillListModeEvent(); //Single or Coinsidence
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void finish();
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// Close the ROOT file with all the results stored in nutples
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private:
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static doiPETAnalysis* instance;
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doiPETAnalysisMessenger* fAnalysisMessenger;
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//std::multimap< G4int, InteractionInformation* > mapBlockInteraction;
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std::set<G4int> setBlockInteraction;
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G4double upperThreshold, lowerThreshold;
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G4double upperThreshold, lowerThreshold;
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G4double triggerEnergy;
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//G4ROOT
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G4bool factoryOn;
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G4int fNtColId[MaxNtCol];
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//
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//G4ThreeVector sourcePosition;
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@@ -166,7 +169,7 @@ private:
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G4double shiftCoeff;
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G4double PositionAngerZ, PositionAngerY;
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//reflector pattern
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std::vector<G4int> ireflectorLayer1_Tangential;
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std::vector<G4int> ireflectorLayer1_Axial;
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@@ -191,6 +194,11 @@ private:
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//interaction position with respect to the crystal axis
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G4ThreeVector interactionPos;
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//interaction position
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G4double intPosX;
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G4double intPosY;
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G4double intPosZ;
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G4double interactionTime;
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@@ -216,10 +224,16 @@ private:
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G4int DOI_ID0, DOI_ID1;
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G4double timeStamp0, timeStamp1;
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G4double totalEdep0, totalEdep1;
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G4double sposX, sposY, sposZ;
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//choice for the user
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G4bool getSinglesData;
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G4bool getCoincidenceData;
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//
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G4bool ApplyAngerLogic;
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G4double PMTblurring_tan;
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G4double PMTblurring_axial;
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G4String outputData;
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G4int numberOfHit;
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@@ -248,6 +262,7 @@ private:
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//G4bool variableResolution;
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G4bool fixedResolution;
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G4bool isDOIlookUpTablePrepared;
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G4double energyResolution_fixed;
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std::vector<std::vector<G4double>> energyResolution_cryDependent;
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@@ -282,14 +297,16 @@ private:
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G4String asciiFileName;
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G4String rootFileName;
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#ifdef USEROOT
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TTree* tSingles;
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TTree* tCoincidence;
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//TH1F*hb;
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#endif
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// #ifdef USEROOT
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// TFile* file;
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// TTree* tSingles;
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// TTree* tCoincidence;
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// //TH1F*hb;
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// #endif
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//input file to read reflector pattern
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std::ifstream ifs;
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};
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#endif
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@@ -60,239 +60,241 @@ class doiPETDetectorConstructionMessenger;
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class doiPETDetectorConstruction : public G4VUserDetectorConstruction
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{
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public:
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doiPETDetectorConstruction();
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virtual ~doiPETDetectorConstruction();
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doiPETDetectorConstruction();
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virtual ~doiPETDetectorConstruction();
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public:
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virtual G4VPhysicalVolume* Construct();
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virtual G4VPhysicalVolume* Construct();
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void ConstructPhantom(G4LogicalVolume*);
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void ChangePhantom(G4String choice);
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void SetPhantomPosition(G4ThreeVector);
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void SetPhantomRadius(G4double);
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void SetPhantomLength(G4double);
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void ConstructPhantom(G4LogicalVolume*);
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void ChangePhantom(G4String choice);
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void SetPhantomPosition(G4ThreeVector);
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void SetPhantomRadius(G4double);
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void SetPhantomLength(G4double);
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void SetNumberOfSleeves(G4int);
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private:
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void DefineMaterials();
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doiPETDetectorConstructionMessenger* fDetectorMessenger;
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doiPETAnalysis* pAnalysis;
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void DefineMaterials();
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doiPETDetectorConstructionMessenger* fDetectorMessenger;
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doiPETAnalysis* pAnalysis;
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G4LogicalVolume* phantom_logicalV;
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G4VPhysicalVolume* phantom_physicalV;
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// G4LogicalVolume* gelatin_logicalV;
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// G4VPhysicalVolume* gelatin_physicalV;
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G4LogicalVolume* phantom_logicalV;
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G4VPhysicalVolume* phantom_physicalV;
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//G4LogicalVolume* gelatin_logicalV;
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//G4VPhysicalVolume* gelatin_physicalV;
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//wolrd
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G4LogicalVolume* world_logicalV;
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G4VPhysicalVolume* world_physicalV;
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//world
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G4LogicalVolume* world_logicalV;
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G4VPhysicalVolume* world_physicalV;
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//detector block
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G4LogicalVolume* blockDetector_logicalV;
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G4VPhysicalVolume* blockDetector_physicalV;
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//detector block
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G4LogicalVolume* blockDetector_logicalV;
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G4VPhysicalVolume* blockDetector_physicalV;
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//air volume to fill the detector block
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G4LogicalVolume* airBox_logicalV;
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G4VPhysicalVolume* airBox_physicalV;
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//air volume to fill the detector block
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G4LogicalVolume* airBox_logicalV;
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G4VPhysicalVolume* airBox_physicalV;
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//crystals
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G4LogicalVolume* crystal_logicalV;
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G4VPhysicalVolume* crystal_physicalV;
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//crystals
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G4LogicalVolume* crystal_logicalV;
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G4VPhysicalVolume* crystal_physicalV;
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//water
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G4LogicalVolume* water_logicalV;
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G4VPhysicalVolume* water_physicalV;
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//water
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G4LogicalVolume* water_logicalV;
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G4VPhysicalVolume* water_physicalV;
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//lung
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G4LogicalVolume* lung_logicalV;
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G4VPhysicalVolume* lung_physicalV;
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//lung
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G4LogicalVolume* lung_logicalV;
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G4VPhysicalVolume* lung_physicalV;
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//test line phantom
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G4LogicalVolume* test_logicalV;
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G4VPhysicalVolume* test_physicalV;
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//test line phantom
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G4LogicalVolume* test_logicalV;
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G4VPhysicalVolume* test_physicalV;
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G4LogicalVolume* lung_logicalV_PMMA;
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G4VPhysicalVolume* lung_physicalVPMMA;
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G4LogicalVolume* lung_logicalV_PMMA;
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G4VPhysicalVolume* lung_physicalVPMMA;
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//cold regions
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// G4LogicalVolume* coldRegion_logicalV;
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// G4VPhysicalVolume* coldRegion_physicalV;
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//cold regions
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//G4LogicalVolume* coldRegion_logicalV;
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//G4VPhysicalVolume* coldRegion_physicalV;
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//
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//Surrounding PMMA for hot sphere
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G4LogicalVolume* hotSpherePMMA_logicalV;
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G4VPhysicalVolume* hotSpherePMMA_physicalV;
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//
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//Surrounding PMMA for hot sphere
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G4LogicalVolume* hotSpherePMMA_logicalV;
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G4VPhysicalVolume* hotSpherePMMA_physicalV;
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//hot water phantom (activity is distributed)
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G4LogicalVolume* hotSphereWater_logicalV;
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G4VPhysicalVolume* hotSphereWater_physicalV;
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//hot water phantom (activity is distributed)
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G4LogicalVolume* hotSphereWater_logicalV;
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G4VPhysicalVolume* hotSphereWater_physicalV;
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//surrounding PMMA cold sphere
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G4LogicalVolume* coldSpherePMMA_logicalV;
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G4VPhysicalVolume* coldSpherePMMA_physicalV;
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//surrounding PMMA cold sphere
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G4LogicalVolume* coldSpherePMMA_logicalV;
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G4VPhysicalVolume* coldSpherePMMA_physicalV;
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//cold Water phantom in the cold PMMA sphere
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G4LogicalVolume* coldSphereWater_logicalV;
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G4VPhysicalVolume* coldSphereWater_physicalV;
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//cold Water phantom in the cold PMMA sphere
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G4LogicalVolume* coldSphereWater_logicalV;
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G4VPhysicalVolume* coldSphereWater_physicalV;
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//fillable polyethylene phantom for sensitivity
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G4LogicalVolume* phantomPE_logicalV;
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G4VPhysicalVolume* phantomPE_physicalV;
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//fillable polyethylene phantom for sensitivity
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G4LogicalVolume* phantomPE_logicalV;
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G4VPhysicalVolume* phantomPE_physicalV;
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//Image quality phantom for small animal NEMA NU-4
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G4LogicalVolume* waterPhantom_logicalV;
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G4VPhysicalVolume* WaterPhantom_physicalV;
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//Image quality phantom for small animal NEMA NU-4
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G4LogicalVolume* waterPhantom_logicalV;
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G4VPhysicalVolume* WaterPhantom_physicalV;
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G4LogicalVolume* rod_phantom_logicalV;
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G4VPhysicalVolume* rod_phantom_physicalV;
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G4LogicalVolume* rod_phantom_logicalV;
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G4VPhysicalVolume* rod_phantom_physicalV;
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G4LogicalVolume* chamberPMMA_logicalV;
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G4VPhysicalVolume* chamberPMMA_physicalV;
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G4LogicalVolume* chamberPMMA_logicalV;
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G4VPhysicalVolume* chamberPMMA_physicalV;
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//
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G4LogicalVolume* chamberWater_logicalV;
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G4VPhysicalVolume* chamberWater_physicalV;
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//
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G4LogicalVolume* chamberWater_logicalV;
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G4VPhysicalVolume* chamberWater_physicalV;
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//
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G4LogicalVolume* chamberAir_logicalV;
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G4VPhysicalVolume* chamberAir_physicalV;
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//
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G4LogicalVolume* chamberAir_logicalV;
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G4VPhysicalVolume* chamberAir_physicalV;
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//Dimension of the sphere
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G4double spherePositionX, spherePositionY; // spherePositionZ;
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G4double sphereDiameter;
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G4double distanceFromCenter;
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G4int numberOfSpheres;
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G4double sphereWallThickness;
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G4double zOffsetSpherePhantom;
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//Dimension of the sphere
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G4double spherePositionX, spherePositionY; //, spherePositionZ;
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G4double sphereDiameter;
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G4double distanceFromCenter;
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G4int numberOfSpheres;
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G4double sphereWallThickness;
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G4double zOffsetSpherePhantom;
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G4String PhantomType;
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G4String PhantomType;
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//materials
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G4Material* air;
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G4Material* pmma;
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G4Material* water;
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G4Material* polyethylene;
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G4Material* polyethylene_NEMA;
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// G4Material* inflatedLung;
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G4Material* polystyrene;
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G4Material* Aluminum;
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//materials
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G4Material* air;
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G4Material* pmma;
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G4Material* water;
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G4Material* polyethylene;
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G4Material* polyethylene_NEMA;
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//G4Material* inflatedLung;
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G4Material* polystyrene;
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G4Material* Aluminum;
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//elements for GSO
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G4Element* O;
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G4Element* Si;
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G4Element* Gd;
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G4Material* GSO;
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//elements for GSO
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G4Element* O;
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G4Element* Si;
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G4Element* Gd;
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G4Material* GSO;
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G4Material* crystalMaterial;
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//G4Material* phantomMaterial;
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G4Material* crystalMaterial;
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//G4Material* phantomMaterial;
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G4bool fCheckOverlaps;
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G4bool isotopes;
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G4bool fCheckOverlaps;
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G4bool isotopes;
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//size of world
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G4double worldSizeX;
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G4double worldSizeY;
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G4double worldSizeZ;
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//size of world
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G4double worldSizeX;
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G4double worldSizeY;
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G4double worldSizeZ;
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//The following is moved to doiPETGlobalParameters.hh
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//G4int numberOfCrystal_DOI;
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//G4int numberOfCrystal_tangential;
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//G4int numberOfCrystal_axial;
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//The following is moved to doiPETGlobalParameters.hh
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//G4int numberOfCrystal_DOI;
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//G4int numberOfCrystal_tangential;
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//G4int numberOfCrystal_axial;
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////
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//G4double sizeOfCrystal_DOI;
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//G4double sizeOfCrystal_tangential;
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//G4double sizeOfCrystal_axial;
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////
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//G4double sizeOfCrystal_DOI;
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//G4double sizeOfCrystal_tangential;
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//G4double sizeOfCrystal_axial;
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////
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//G4double crystalGap_DOI;
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//G4double crystalGap_tangential;
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//G4double crystalGap_axial;
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////
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//G4double crystalGap_DOI;
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//G4double crystalGap_tangential;
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//G4double crystalGap_axial;
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G4double sizeOfAirBox_DOI;
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G4double sizeOfAirBox_axial;
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G4double sizeOfAirBox_tangential;
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G4double sizeOfAirBox_DOI;
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G4double sizeOfAirBox_axial;
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G4double sizeOfAirBox_tangential;
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G4double sizeOfBlockDetector_DOI;
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G4double sizeOfBlockDetector_axial;
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G4double sizeOfBlockDetector_tangential;
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G4double sizeOfBlockDetector_DOI;
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G4double sizeOfBlockDetector_axial;
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G4double sizeOfBlockDetector_tangential;
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//G4double AluminumCoverThickness;
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//G4double AluminumCoverThickness;
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//G4int numberOfPETDetector;
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//G4int numberOfRings;
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//G4int numberOfPETDetector;
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//G4int numberOfRings;
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//G4double scannerRadius;
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G4double thetaDetector; //The azimuthal angle for arranging the detector in the PET ring
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//G4double ringGap;
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G4int blockIndex;
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// G4int AlCase_Index;
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G4int crystalIndex;
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//G4double scannerRadius;
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G4double thetaDetector; //The azimuthal angle for arranging the detector in the PET ring
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//G4double ringGap;
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G4int blockIndex;
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//G4int AlCase_Index;
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G4int crystalIndex;
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//detector position
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G4double detectorPositionX;
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G4double detectorPositionY;
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G4double detectorPositionZ;
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//detector position
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G4double detectorPositionX;
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G4double detectorPositionY;
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G4double detectorPositionZ;
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//crystal position
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G4double crystalPositionX;
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G4double crystalPositionY;
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G4double crystalPositionZ;
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//crystal position
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G4double crystalPositionX;
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G4double crystalPositionY;
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G4double crystalPositionZ;
|
||||
|
||||
|
||||
|
||||
G4ThreeVector phantomPosition;
|
||||
G4ThreeVector phantomPosition;
|
||||
|
||||
//
|
||||
G4double phantomRadius;
|
||||
G4double phantomLength;
|
||||
//
|
||||
G4double phantomRadius;
|
||||
G4double phantomLength;
|
||||
|
||||
//Phantom dimension for rectangular box (placed for therapy study)
|
||||
// G4double phantomSizeX, phantomSizeY, phantomSizeZ;
|
||||
//Phantom dimension for rectangular box (placed for therapy study)
|
||||
//G4double phantomSizeX, phantomSizeY, phantomSizeZ;
|
||||
|
||||
//the following is to make the body phantom
|
||||
G4double yOffsetBodyPhantom;
|
||||
G4double zOffsetBodyPhantom;
|
||||
G4double lengthOfBodyPhantom; //Interior length ( = 180m mm) + wallthickness (= 3mm)
|
||||
G4double radiusOfBodyPhantom;
|
||||
G4double wallThicknessOfBodyPhantom;
|
||||
G4double radiusOfLungPhantom;
|
||||
//the following is to make the body phantom
|
||||
G4double yOffsetBodyPhantom;
|
||||
G4double zOffsetBodyPhantom;
|
||||
G4double lengthOfBodyPhantom; //Interior length ( = 180m mm) + wallthickness (= 3mm)
|
||||
G4double radiusOfBodyPhantom;
|
||||
G4double wallThicknessOfBodyPhantom;
|
||||
G4double radiusOfLungPhantom;
|
||||
|
||||
//Test phantom defnition. The phantom has the same as that that of NECR phantom except
|
||||
G4double hieghtOfTestPhantom;
|
||||
G4double diameterOfTestPhantom;
|
||||
//Test phantom defnition. The phantom has the same as that that of NECR phantom except
|
||||
G4double hieghtOfTestPhantom;
|
||||
G4double diameterOfTestPhantom;
|
||||
|
||||
//To the cylindrical phantom to make the body phantom
|
||||
G4double radiusOfSmallcyl;
|
||||
G4double boxWidth;
|
||||
G4double boxHeight;
|
||||
//To the cylindrical phantom to make the body phantom
|
||||
G4double radiusOfSmallcyl;
|
||||
G4double boxWidth;
|
||||
G4double boxHeight;
|
||||
|
||||
|
||||
//Image quality phantom for small animals
|
||||
G4double waterPhantomRadius;
|
||||
G4double waterPhantomLength;
|
||||
//Image quality phantom for small animals
|
||||
G4double waterPhantomRadius;
|
||||
G4double waterPhantomLength;
|
||||
|
||||
G4double rodPhantomLength;
|
||||
G4double rodDiameter;
|
||||
G4int numberOfRods;
|
||||
G4double rodPhantomLength;
|
||||
G4double rodDiameter;
|
||||
G4int numberOfRods;
|
||||
|
||||
//Declare position for the rod phantoms
|
||||
G4double rodPositionX, rodPositionY, rodPositionZ;
|
||||
|
||||
//Declare position for cold region chanmbers
|
||||
G4double chamberPositionX, chamberPositionY, chamberPositionZ;
|
||||
G4double chamberPhantomLength;
|
||||
G4double chamberDiameter;
|
||||
G4double wallThicknessOfChamber;
|
||||
//Declare position for the rod phantoms
|
||||
G4double rodPositionX, rodPositionY, rodPositionZ;
|
||||
|
||||
//Declare position for cold region chanmbers
|
||||
G4double chamberPositionX, chamberPositionY, chamberPositionZ;
|
||||
G4double chamberPhantomLength;
|
||||
G4double chamberDiameter;
|
||||
G4double wallThicknessOfChamber;
|
||||
|
||||
//Declare the number of concentric (Al) sleeves
|
||||
G4int numOfSleeves;
|
||||
};
|
||||
|
||||
/////////////////////////////////////////////////////////////////////////////////////////
|
||||
|
||||
@@ -75,6 +75,7 @@ private:
|
||||
G4UIcmdWith3VectorAndUnit *changeThePhantomPositionCmd;
|
||||
G4UIcmdWithADoubleAndUnit* changePhantomRadiusCmd;
|
||||
G4UIcmdWithADoubleAndUnit* changePhantomLengthCmd;
|
||||
G4UIcmdWithAnInteger* changeNumOfSleevesCmd;
|
||||
};
|
||||
|
||||
#endif
|
||||
|
||||
@@ -51,15 +51,15 @@
|
||||
class doiPETEventAction : public G4UserEventAction
|
||||
{
|
||||
public:
|
||||
doiPETEventAction();
|
||||
virtual ~doiPETEventAction();
|
||||
doiPETEventAction();
|
||||
virtual ~doiPETEventAction();
|
||||
|
||||
virtual void BeginOfEventAction(const G4Event*);
|
||||
virtual void EndOfEventAction(const G4Event*);
|
||||
virtual void BeginOfEventAction(const G4Event*);
|
||||
virtual void EndOfEventAction(const G4Event*);
|
||||
|
||||
private:
|
||||
// G4int eventID;
|
||||
G4int printModulo;
|
||||
//G4int eventID;
|
||||
G4int printModulo;
|
||||
};
|
||||
|
||||
#endif
|
||||
|
||||
@@ -26,6 +26,7 @@
|
||||
/// \file electromagnetic/TestEm11/include/doiPETRun.hh
|
||||
/// \brief Definition of the doiPETRun class
|
||||
//
|
||||
// $Id: doiPETRun.hh 71375 2013-06-14 07:39:33Z maire $
|
||||
//
|
||||
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
|
||||
//....oooOO0OOooo........oooOO0OOooo........oooOO0OOooo........oooOO0OOooo......
|
||||
@@ -66,24 +67,28 @@ public:
|
||||
void SetAnnihilationTime(G4double);
|
||||
void SetEventID(G4int);
|
||||
virtual void Merge(const G4Run*);
|
||||
// void EndOfRun();
|
||||
G4ThreeVector CenterOfMassInteractionPos(const std::vector<G4int>&, const std::vector<G4double>&, G4double, const std::vector<G4ThreeVector>&);
|
||||
//void EndOfRun();
|
||||
|
||||
private:
|
||||
|
||||
std::multimap< G4int, InteractionInformation* > mapBlockInteraction;
|
||||
std::set<G4int> setBlockInteraction;
|
||||
std::ofstream ofs;
|
||||
|
||||
std::vector<G4int> crystalID_vec;
|
||||
std::vector<G4ThreeVector> posInter_vec;
|
||||
std::vector<G4double>edepInCry_vec;
|
||||
|
||||
//center of mass interaction of position
|
||||
G4ThreeVector posInterInCrystal;
|
||||
|
||||
G4int eventID;
|
||||
doiPETRunAction* fRunAction;
|
||||
doiPETAnalysis* fAnalysis;
|
||||
G4double totalEdep;
|
||||
G4int blockID, crystalID;
|
||||
|
||||
//
|
||||
G4double activityNow;
|
||||
G4double InitialActivity;
|
||||
G4double halfLife;
|
||||
|
||||
G4double totalTime;
|
||||
G4double prev_totalTime;
|
||||
G4double timeInterval;
|
||||
|
||||
@@ -43,6 +43,7 @@
|
||||
|
||||
#include "G4UserRunAction.hh"
|
||||
#include "globals.hh"
|
||||
#include "doiPETAnalysis.hh"
|
||||
|
||||
class doiPETDetectorConstruction;
|
||||
class doiPETRun;
|
||||
@@ -54,8 +55,13 @@ class doiPETPrimaryGeneratorAction;
|
||||
class doiPETRunAction : public G4UserRunAction
|
||||
{
|
||||
public:
|
||||
#ifdef ANALYSIS_USE
|
||||
doiPETRunAction(doiPETAnalysis* analysis);
|
||||
#else
|
||||
doiPETRunAction();
|
||||
#endif
|
||||
//doiPETRunAction();
|
||||
doiPETRunAction(/*doiPETDetectorConstruction*, doiPETPrimaryGeneratorAction**/);
|
||||
//doiPETRunAction(/*doiPETDetectorConstruction*, doiPETPrimaryGeneratorAction**/);
|
||||
virtual ~doiPETRunAction();
|
||||
virtual G4Run* GenerateRun();
|
||||
|
||||
@@ -63,8 +69,10 @@ public:
|
||||
virtual void EndOfRunAction(const G4Run*);
|
||||
|
||||
private:
|
||||
doiPETRun* fRun;
|
||||
//HistoManager* fHistoManager;
|
||||
doiPETRun* fRun;
|
||||
#ifdef ANALYSIS_USE
|
||||
doiPETAnalysis* analysisMan;
|
||||
#endif
|
||||
|
||||
};
|
||||
#endif
|
||||
|
||||
Reference in New Issue
Block a user