Import Geant4 5.0.0 source tree

examples/advanced/brachytherapy/README

@@ -1,6 +1,3 @@
--------------------------------------------------------------------
-$Id: README,v 1.5 2002/06/13 15:59:43 guatelli Exp $
--------------------------------------------------------------------
 
      =========================================================
  		      Geant4 - Brachytherapy example
@@ -11,52 +8,63 @@ $Id: README,v 1.5 2002/06/13 15:59:43 guatelli Exp $
 
 0. Introduction.
 
-Brachytherapy example simulates energy deposition on a voxel grid
-for a Ir   brachytherapy source.
+Brachytherapy example simulates energy deposition in a Phantom filled with
+soft tissue for: 
+1) Ir   brachytherapy source.
+2) I   brachytherapy source.
+3) Leipzig Applicator.
 
-1. Technical description
+1.Technical information.
 
-1.0. the  source is constructed in the 
-brachyDetectorConstruction class. The source is composed by
-an iridium  core encapsulated in a capsule (body + tip). 
-The source is put in the center of a 30*cm water box.
+The default source is an Ir source put in the center of the Phantom.   
+The Phantom is a box (dimension:30cm)
 
-1.1. The water box is made sensitive detector. A longitudinal slice
-of it is associated to a planar read out geometry. At every hit
-energy deposition is read and stored in a 2D histogram.
+2.How to run the example.
+ 
+    - run "Brachy" executable.  
+    - you can run the example in batch or interative mode.
 
-1.2. the  output is  the file  brachy2.hbk  
-(e.g. anysotropy and isodose calculations):
- 1)1Dhistogram with the spectrum of initial energy of gamma
+Default:  batch mode with 1000 events
+
+
+In interative mode, you can choose:
+
+1)Ir source:
+idle>/run/beamOn NumberOfEvents and then
+idle>  exit
+
+2)Leipzig Applicator:
+idle>/geom/switch Leipzig 
+idle>/run/beamOn NumberOfEvents and then
+idle> exit
+
+3) I source:
+idle>/geom/switch Iodium
+idle>/run/energy Iodium
+idle>/run/beamOn NumberOfEvents 
+idle>exit
+
+Before the run you can also change the absorber material of the Phantom:
+idle>/detecor/setMaterial name
+
+4)simulation output: brachytherapy.hbk
+ It contains:
+ 1)1Dhistogram with the primary particle energy 
  2)2Dhistogram with the distribution of energy in the plane (x,z,energy)
-2. Make
+ 3)Ntuple with the energy deposit in the Phantom
 
-1.3.the default visualization is with Dawn 
+
+5)the default visualization is with Dawn 
 
 A standard Geant4 example GNUmakefile is provided.
 
-2. Usage
-
- run "Brachy" executable. 
-The framework in in interactive mode,so
-you have to do:
-idle>/run/beamOn ( numberofevents)
-
-The output is ("brachy2.hbk")
-
-
-
-
-------How to run the new version of AIDA:----------------------
-
-
-1)Aida  platform for Linux:gcc compiler 2.95.2
 
 -------------------------enviroment with the compiler 2.95.2 on lxplus---------
 
 
 setenv G4LEDATA /afs/cern.ch/sw/geant4/dev/data/G4EMLOW1.1
 setenv G4INSTALL /...
+setenv CLHEP_BASE_DIR /afs/cern.ch/sw/geant4/dev/CLHEP/Linux-g++/1.7.5
 #
 # ---- Linux setup ----
 #
@@ -95,7 +103,7 @@ setenv G4VIS_USE_DAWN               1
 setenv G4VIS_USE_DAWNFILE           1
 setenv PATH ${PATH}:"/afs/cern.ch/sw/geant4/dev/DAWN/Linux-g++"
 
-
+setenv LD_LIBRARY_PATH $OGLHOME/lib
 
 -----------------------------------------------------------------------------------
 
@@ -103,21 +111,15 @@ setenv PATH ${PATH}:"/afs/cern.ch/sw/geant4/dev/DAWN/Linux-g++"
 # ---- Analysis----
 
 setenv G4ANALYSIS_BUILD  1
-setenv PATH "${PATH}:/afs/cern.ch/sw/lhcxx/specific/redhat61/gcc-2.95.2/4.0.0/bin"
-source /afs/cern.ch/sw/lhcxx/share/LHCXX/4.0.0/install/sharedstart.csh
-setenv G4ANALYSIS_AIDA_CONFIG_CFLAGS `aida-config --noLicense --include`
-setenv G4ANALYSIS_AIDA_CONFIG_LIBS   `aida-config --noLicense --libs`
+setenv PATH "${PATH}:/afs/cern.ch/sw/lhcxx/specific/redhat61/gcc-2.95.2/5.0.1/bin"
+setenv G4ANALYSIS_AIDA_CONFIG_LIBS "-L/afs/cern.ch/sw/lhcxx/specific/redhat61/gcc-2.95.2/5.0.1/lib -lAnaphe_AIDA_AnalysisFactory_native -lAnaphe_AIDA_Annotation_native -lAnaphe_AIDA_Histogram_native -lAnaphe_AIDA_Tree_native -lAnaphe_AIDA_HBookStore -lg2c-forMinuit -lHepUtilities -lCLHEP -lAnaphe_AIDA_Tuple_native"
+setenv G4ANALYSIS_AIDA_CONFIG_CFLAGS "-I/afs/cern.ch/sw/contrib/AIDA/3.0/src/cpp -I/afs/cern.ch/sw/lhcxx/specific/redhat61/gcc-2.95.2/5.0.1/include"
+setenv ANAPHE5_REL_DIR /afs/cern.ch/sw/contrib/AIDA/3.0/src/cpp 
+setenv LD_LIBRARY_PATH /afs/cern.ch/sw/lhcxx/specific/redhat61/gcc-2.95.2/5.0.1/lib:$LD_LIBRARY_PATH
+setenv LD_LIBRARY_PATH ${LD_LIBRARY_PATH}:"/afs/cern.ch/sw/lhcxx/specific/redhat61/gcc-2.95.2/5.0.1/lib"
+
 
-# ---- add to the LD_LIBRARY_PATH 
-setenv LD_LIBRARY_PATH $OGLHOME/lib
-#
-# ---- end of Linux set-up ----
 
-before running remenber to delete *.hbk
 
-in the file brachy.py there are the instructions  to visualize the histograms with the old version of Lizard;
 
-in order to do that open another lxplus with egcs-2.91.66 and make:
-source /afs/cern.ch/sw/lhcxx/share/LHCXX/3.6.3-sec/install/sharedstart.csh
-then digit lizard in the directory where brachy3.hbk is and then follow the instruction of the brachy.py